PMC:7095437 / 8851-11047
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 197 | 1903-1910 | Species | denotes | patient | Tax:9606 |
| 198 | 834-852 | Disease | denotes | pulmonary fibrosis | MESH:D011658 |
| 199 | 992-1007 | Disease | denotes | lymphadenopathy | MESH:D008206 |
| 200 | 1092-1108 | Disease | denotes | pleural effusion | MESH:D010996 |
| 201 | 1486-1494 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T25 | 170-174 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T26 | 772-786 | Body_part | denotes | bronchial wall | http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480 |
| T28 | 1009-1019 | Body_part | denotes | lymph node | http://purl.org/sig/ont/fma/fma5034 |
| T29 | 1072-1076 | Body_part | denotes | axis | http://purl.org/sig/ont/fma/fma12520 |
| T30 | 1257-1261 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T31 | 1316-1320 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T32 | 1360-1364 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T33 | 2015-2020 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T18 | 170-174 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T19 | 349-356 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T20 | 1009-1019 | Body_part | denotes | lymph node | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T21 | 1009-1014 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T22 | 1092-1108 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T23 | 1257-1261 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T24 | 1316-1320 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T25 | 1360-1364 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T26 | 1575-1579 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T27 | 1652-1656 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T28 | 1685-1689 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T29 | 1719-1723 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T30 | 1753-1757 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T31 | 1797-1801 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T32 | 2015-2020 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T52 | 834-852 | Disease | denotes | pulmonary fibrosis | http://purl.obolibrary.org/obo/MONDO_0002771 |
| T53 | 992-1007 | Disease | denotes | lymphadenopathy | http://purl.obolibrary.org/obo/MONDO_0005833 |
| T54 | 1486-1494 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T52 | 170-174 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T53 | 170-174 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T54 | 260-261 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T55 | 349-356 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessels |
| T56 | 361-367 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airway |
| T57 | 376-377 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T58 | 479-480 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T59 | 505-506 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T60 | 545-546 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T61 | 654-655 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T62 | 715-716 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T63 | 759-760 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T64 | 799-800 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T65 | 1009-1019 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph node |
| T66 | 1092-1108 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T67 | 1257-1261 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T68 | 1257-1261 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T69 | 1316-1320 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T70 | 1316-1320 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T71 | 1360-1364 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T72 | 1360-1364 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T73 | 1410-1411 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T74 | 1598-1599 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T75 | 2015-2020 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T76 | 2060-2062 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T15 | 834-852 | Phenotype | denotes | pulmonary fibrosis | http://purl.obolibrary.org/obo/HP_0002206 |
| T16 | 992-1007 | Phenotype | denotes | lymphadenopathy | http://purl.obolibrary.org/obo/HP_0002716 |
| T17 | 1092-1108 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
0_colil
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32211963-26218473-62964 | 564-566 | 26218473 | denotes | 13 |
| 32211963-18195376-62965 | 568-570 | 18195376 | denotes | 14 |
| 32211963-14990845-62966 | 1376-1378 | 14990845 | denotes | 15 |
| 32211963-14990845-62967 | 1526-1528 | 14990845 | denotes | 15 |
| 32211963-16055695-62968 | 1530-1532 | 16055695 | denotes | 16 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T59 | 0-16 | Sentence | denotes | CT data analysis |
| T60 | 17-572 | Sentence | denotes | All CT findings were described according to the Fleischner Society recommendations and defined as follows: GGO (appears as hazy increased opacity in the lung, with the preservation of bronchial and vascular margins), consolidation (appears as a homogeneous increase in pulmonary parenchymal attenuation that obscures the margins of vessels and airway walls), a crazy-paving pattern (appears as thickened interlobular septa and intralobular lines superimposed on a background of GGO), and a halo sign (appears as GGO surrounding a nodule or mass) [13, 14]. |
| T61 | 573-953 | Sentence | denotes | Attention was paid to CT images with GGO, consolidation, GGO with consolidation, a reticular pattern, nodules, rounded opacities, cavitation, a crazy-paving pattern, an air bronchogram, a halo sign, bronchial wall thickening, a subpleural curvilinear line, and pulmonary fibrosis, and the presence, distribution, and size of these CT characteristics were assessed in all subjects. |
| T62 | 954-1142 | Sentence | denotes | In addition, the presence of thoracic lymphadenopathy (lymph node size of greater than or equal to 10 mm in the short-axis dimension) and pleural effusion or thickening were also recorded. |
| T63 | 1143-1380 | Sentence | denotes | The distribution of each finding was classified as follows: central (predominantly in the inner two-thirds of the lung), peripheral (predominantly in the outer third of the lung), and diffuse (indications in multiple lung segments) [15]. |
| T64 | 1381-1534 | Sentence | denotes | Calculation of the CT score, a semiquantitative evaluation method, was applied to quantify the extent of COVID-19 according to previous studies [15, 16]. |
| T65 | 1535-1816 | Sentence | denotes | First, the scope of the lesions in each lobe was estimated and a score of 0 (none), 1 (affecting less than 5% of the lobe), 2 (affecting 5–25% of the lobe), 3 (affecting 26–49% of the lobe), 4 (affecting 50–75% of the lobe), or 5 (affecting more than 75% of the lobe) was assigned. |
| T66 | 1817-1893 | Sentence | denotes | Second, the CT score was obtained by adding up the scores of the five lobes. |
| T67 | 1894-1953 | Sentence | denotes | For each patient, the CT score was in the range of 0 to 25. |
| T68 | 1954-2120 | Sentence | denotes | All CT scans were independently reviewed and assessed by two chest radiologists (Z.F. and L.L.C., who had 18 years of experience in thoracic radiology, respectively). |
| T69 | 2121-2196 | Sentence | denotes | Disagreements in reader interpretation were settled by consensus agreement. |
TEST0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32211963-230-236-62964 | 564-566 | ["26218473"] | denotes | 13 |
| 32211963-234-240-62965 | 568-570 | ["18195376"] | denotes | 14 |
| 32211963-233-239-62966 | 1376-1378 | ["14990845"] | denotes | 15 |
| 32211963-145-151-62967 | 1526-1528 | ["14990845"] | denotes | 15 |
| 32211963-149-155-62968 | 1530-1532 | ["16055695"] | denotes | 16 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32211963-26218473-29369855 | 564-566 | 26218473 | denotes | 13 |
| 32211963-18195376-29369856 | 568-570 | 18195376 | denotes | 14 |
| 32211963-14990845-29369857 | 1376-1378 | 14990845 | denotes | 15 |
| 32211963-14990845-29369858 | 1526-1528 | 14990845 | denotes | 15 |
| 32211963-16055695-29369859 | 1530-1532 | 16055695 | denotes | 16 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32211963-26218473-29369855 | 564-566 | 26218473 | denotes | 13 |
| 32211963-18195376-29369856 | 568-570 | 18195376 | denotes | 14 |
| 32211963-14990845-29369857 | 1376-1378 | 14990845 | denotes | 15 |
| 32211963-14990845-29369858 | 1526-1528 | 14990845 | denotes | 15 |
| 32211963-16055695-29369859 | 1530-1532 | 16055695 | denotes | 16 |