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PMC:7095437 / 21653-23055 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
400 396-404 Species denotes patients Tax:9606
401 481-489 Species denotes patients Tax:9606
402 551-561 Species denotes SARS-CoV-2 Tax:2697049
403 666-679 Species denotes coronaviruses Tax:11118
404 718-726 Species denotes SARS-CoV Tax:694009
405 763-771 Species denotes MERS-CoV Tax:1335626
406 882-895 Species denotes coronaviruses Tax:11118
407 964-972 Species denotes patients Tax:9606
408 1020-1028 Species denotes patients Tax:9606
409 42-50 Disease denotes COVID-19 MESH:C000657245
410 214-232 Disease denotes pulmonary fibrosis MESH:D011658
411 244-261 Disease denotes pleural effusions MESH:D010996
412 410-418 Disease denotes COVID-19 MESH:C000657245
413 472-480 Disease denotes COVID-19 MESH:C000657245
414 627-653 Disease denotes acute respiratory syndrome MESH:D012120
415 810-826 Disease denotes viral infections MESH:D001102
416 955-963 Disease denotes COVID-19 MESH:C000657245
417 1205-1212 Disease denotes thrombi MESH:D013927

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T88 282-287 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T89 387-392 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T90 457-461 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T91 462-468 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T92 1079-1095 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T93 1090-1095 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T94 1183-1189 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T95 1190-1195 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T96 1237-1251 Body_part denotes fibrous tissue http://purl.org/sig/ont/fma/fma63898

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T71 244-261 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T72 282-287 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T73 457-461 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T74 462-468 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T75 1183-1189 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T76 1245-1251 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T89 42-50 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T90 214-232 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T91 410-418 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T92 472-480 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T93 551-559 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 551-555 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T95 620-653 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T96 655-659 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T97 718-726 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T98 718-722 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T99 810-829 Disease denotes viral infections in http://purl.obolibrary.org/obo/MONDO_0005108
T100 955-963 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 1015-1019 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T102 1059-1065 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T168 137-138 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T169 244-261 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T170 282-287 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T171 387-392 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T172 457-461 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T173 457-461 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T174 608-611 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T175 777-779 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T176 1079-1089 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T177 1090-1095 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T178 1105-1113 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T179 1165-1166 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 1190-1195 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T181 1273-1279 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T182 1288-1294 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavity

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T29 214-232 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T30 244-261 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 794-806 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T7 810-826 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T8 1114-1123 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

0_colil

Id Subject Object Predicate Lexical cue
32211963-32007145-62970 777-779 32007145 denotes 18
32211963-29757717-62971 1296-1298 29757717 denotes 19

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T183 0-200 Sentence denotes In our study, the major characteristic of COVID-19 was GGO (61.3%), followed by GGO with consolidation (35.5%), rounded opacity (25.8%), a crazy-paving pattern (25.8%), and an air bronchogram (22.6%).
T184 201-298 Sentence denotes In contrast, pulmonary fibrosis (1.6%) and pleural effusions (3.2%) were rare on chest CT images.
T185 299-419 Sentence denotes These various CT findings are likely related to the complex pathological changes in the lungs of patients with COVID-19.
T186 420-781 Sentence denotes Although pathological changes in the lung tissue of COVID-19 patients have not yet been studied, recent studies have reported that SARS-CoV-2 is closely related (with 88% identity) to two bat-derived severe acute respiratory syndrome (SARS)–like coronaviruses, with approximately 79% homology with SARS-CoV and approximately 50% homology with MERS-CoV [17, 18].
T187 782-1011 Sentence denotes Because the pathogenesis of viral infections in the same family may be similar, previous studies on coronaviruses may be helpful in understanding the various CT findings in COVID-19 patients based on similar pathological changes.
T188 1012-1300 Sentence denotes In SARS patients, pathological changes include injury to pulmonary epithelial cells, hyaline membrane formation on in the inner wall of the alveoli, and a large number of tissue cells and mass thrombi formed by proliferative fibrous tissue that block the small airway and air cavity [19].
T189 1301-1402 Sentence denotes These pathological changes may be the main pathological basis of the CT findings, especially the GGO.

TEST0

Id Subject Object Predicate Lexical cue
32211963-231-237-62970 777-779 ["32007145"] denotes 18
32211963-237-243-62971 1296-1298 ["29757717"] denotes 19

2_test

Id Subject Object Predicate Lexical cue
32211963-32007145-29369861 777-779 32007145 denotes 18
32211963-29757717-29369862 1296-1298 29757717 denotes 19

MyTest

Id Subject Object Predicate Lexical cue
32211963-32007145-29369861 777-779 32007145 denotes 18
32211963-29757717-29369862 1296-1298 29757717 denotes 19