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PMC:7095437 / 1955-29129 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
40 88-135 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
41 137-147 Species denotes SARS-CoV-2 Tax:2697049
42 58-67 Disease denotes pneumonia MESH:D011014
43 214-238 Disease denotes coronavirus disease 2019 MESH:C000657245
44 240-248 Disease denotes COVID-19 MESH:C000657245
45 407-413 Disease denotes deaths MESH:D003643
55 620-630 Species denotes SARS-CoV-2 Tax:2697049
56 726-734 Species denotes patients Tax:9606
57 1130-1138 Species denotes patients Tax:9606
58 1192-1200 Species denotes patients Tax:9606
59 747-755 Disease denotes COVID-19 MESH:C000657245
60 801-809 Disease denotes COVID-19 MESH:C000657245
61 1019-1054 Disease denotes pulmonary parenchymal abnormalities MESH:D008171
62 1206-1213 Disease denotes dyspnea MESH:D004417
63 1218-1238 Disease denotes respiratory distress MESH:D012128
78 1294-1304 Species denotes SARS-CoV-2 Tax:2697049
79 1735-1748 Species denotes coronaviruses Tax:11118
80 1758-1803 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
81 1805-1813 Species denotes SARS-CoV Tax:694009
82 1819-1874 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
83 2164-2172 Species denotes patients Tax:9606
84 1253-1262 Disease denotes infection MESH:D007239
85 1561-1570 Disease denotes pneumonia MESH:D011014
86 1651-1659 Disease denotes COVID-19 MESH:C000657245
87 1672-1681 Disease denotes pneumonia MESH:D011014
88 1709-1718 Disease denotes pneumonia MESH:D011014
89 1875-1885 Disease denotes infections MESH:D007239
90 2124-2132 Disease denotes COVID-19 MESH:C000657245
91 2202-2211 Disease denotes infection MESH:D007239
101 2400-2408 Species denotes patients Tax:9606
102 2713-2721 Species denotes patients Tax:9606
103 2738-2748 Species denotes SARS-CoV-2 Tax:2697049
104 2793-2801 Species denotes patients Tax:9606
105 2391-2399 Disease denotes COVID-19 MESH:C000657245
106 2703-2712 Disease denotes pneumonia MESH:D011014
107 2722-2730 Disease denotes infected MESH:D007239
108 2784-2792 Disease denotes COVID-19 MESH:C000657245
109 2929-2937 Disease denotes COVID-19 MESH:C000657245
111 5446-5470 Disease denotes coronavirus disease 2019 MESH:C000657245
148 5265-5283 Gene denotes C-reactive protein Gene:1401
149 5285-5288 Gene denotes CRP Gene:1401
150 3373-3381 Species denotes patients Tax:9606
151 3428-3436 Species denotes patients Tax:9606
152 3488-3496 Species denotes patients Tax:9606
153 3570-3578 Species denotes patients Tax:9606
154 3798-3806 Species denotes patients Tax:9606
155 4003-4011 Species denotes patients Tax:9606
156 4113-4121 Species denotes patients Tax:9606
157 4166-4174 Species denotes patients Tax:9606
158 4248-4256 Species denotes patients Tax:9606
159 4318-4326 Species denotes patients Tax:9606
160 4410-4418 Species denotes patients Tax:9606
161 4423-4426 Species denotes men Tax:9606
162 4431-4436 Species denotes women Tax:9606
163 4562-4570 Species denotes patients Tax:9606
164 4629-4639 Species denotes SARS-CoV-2 Tax:2697049
165 4746-4754 Species denotes patients Tax:9606
166 4948-4956 Species denotes patients Tax:9606
167 5026-5029 Species denotes men Tax:9606
168 5034-5039 Species denotes women Tax:9606
169 5072-5080 Species denotes patients Tax:9606
170 5158-5161 Species denotes men Tax:9606
171 5166-5171 Species denotes women Tax:9606
172 5205-5213 Species denotes patients Tax:9606
173 3395-3403 Disease denotes COVID-19 MESH:C000657245
174 3584-3592 Disease denotes COVID-19 MESH:C000657245
175 4056-4075 Disease denotes pulmonary infection MESH:D012141
176 4265-4285 Disease denotes pulmonary infections MESH:D012141
177 4401-4409 Disease denotes COVID-19 MESH:C000657245
178 4553-4561 Disease denotes COVID-19 MESH:C000657245
179 4704-4724 Disease denotes SARS-CoV-2 infection MESH:C000657245
180 4759-4764 Disease denotes fever MESH:D005334
181 4798-4803 Disease denotes cough MESH:D003371
182 4820-4829 Disease denotes dizziness MESH:D004244
183 4853-4860 Disease denotes myalgia MESH:D063806
188 5599-5607 Species denotes patients Tax:9606
189 5732-5740 Species denotes patients Tax:9606
190 6082-6090 Species denotes patients Tax:9606
191 6434-6442 Species denotes patients Tax:9606
197 8799-8806 Species denotes patient Tax:9606
198 7730-7748 Disease denotes pulmonary fibrosis MESH:D011658
199 7888-7903 Disease denotes lymphadenopathy MESH:D008206
200 7988-8004 Disease denotes pleural effusion MESH:D010996
201 8382-8390 Disease denotes COVID-19 MESH:C000657245
204 9797-9800 Gene denotes CRP Gene:1401
205 9790-9795 Disease denotes fever MESH:D005334
208 10131-10139 Species denotes patients Tax:9606
209 10145-10153 Disease denotes COVID-19 MESH:C000657245
213 11302-11305 Gene denotes CRP Gene:1401
214 11257-11261 Gene denotes 1–41 Gene:3543
215 11099-11104 Disease denotes Fever MESH:D005334
218 10768-10776 Species denotes patients Tax:9606
219 10782-10790 Disease denotes COVID-19 MESH:C000657245
222 11755-11758 Gene denotes CRP Gene:1401
223 11729-11753 Disease denotes coronavirus disease 2019 MESH:C000657245
233 10503-10506 Gene denotes CRP Gene:1401
234 10206-10214 Species denotes patients Tax:9606
235 10269-10277 Species denotes patients Tax:9606
236 10290-10298 Species denotes patients Tax:9606
237 10326-10336 Species denotes SARS-CoV-2 Tax:2697049
238 10358-10366 Species denotes patients Tax:9606
239 10220-10228 Disease denotes COVID-19 MESH:C000657245
240 10371-10376 Disease denotes fever MESH:D005334
241 10399-10404 Disease denotes fever MESH:D005334
244 11795-11803 Species denotes patients Tax:9606
245 11809-11817 Disease denotes COVID-19 MESH:C000657245
249 13618-13633 Disease denotes lymphadenopathy MESH:D008206
250 13657-13673 Disease denotes Pleural effusion MESH:D010996
251 13728-13736 Disease denotes fibrosis MESH:D005355
254 12969-12977 Species denotes patients Tax:9606
255 12983-12991 Disease denotes COVID-19 MESH:C000657245
257 14248-14272 Disease denotes coronavirus disease 2019 MESH:C000657245
259 14304-14328 Disease denotes coronavirus disease 2019 MESH:C000657245
261 14683-14707 Disease denotes coronavirus disease 2019 MESH:C000657245
263 15185-15209 Disease denotes coronavirus disease 2019 MESH:C000657245
266 15676-15700 Disease denotes coronavirus disease 2019 MESH:C000657245
267 15956-15972 Disease denotes pleural effusion MESH:D010996
284 11837-11845 Species denotes patients Tax:9606
285 12035-12043 Species denotes patients Tax:9606
286 12108-12116 Species denotes patients Tax:9606
287 12164-12172 Species denotes patients Tax:9606
288 12224-12232 Species denotes patients Tax:9606
289 12280-12288 Species denotes patients Tax:9606
290 12328-12336 Species denotes patients Tax:9606
291 12393-12401 Species denotes patients Tax:9606
292 12445-12453 Species denotes patients Tax:9606
293 12558-12565 Species denotes patient Tax:9606
294 12575-12582 Species denotes patient Tax:9606
295 12892-12900 Species denotes patients Tax:9606
296 11851-11859 Disease denotes COVID-19 MESH:C000657245
297 12403-12419 Disease denotes pleural effusion MESH:D010996
298 12483-12507 Disease denotes thoracic lymphadenopathy MESH:D013896
299 12513-12531 Disease denotes pulmonary fibrosis MESH:D011658
312 16208-16216 Species denotes patients Tax:9606
313 16287-16295 Species denotes patients Tax:9606
314 16366-16374 Species denotes patients Tax:9606
315 16450-16457 Species denotes patient Tax:9606
316 16550-16558 Species denotes patients Tax:9606
317 16829-16837 Species denotes patients Tax:9606
318 16908-16916 Species denotes patients Tax:9606
319 17053-17061 Species denotes patients Tax:9606
320 16564-16572 Disease denotes COVID-19 MESH:C000657245
321 16616-16651 Disease denotes pulmonary parenchymal abnormalities MESH:D008171
322 16991-17026 Disease denotes pulmonary parenchymal abnormalities MESH:D008171
323 17067-17075 Disease denotes COVID-19 MESH:C000657245
326 17102-17110 Species denotes patients Tax:9606
327 17116-17124 Disease denotes COVID-19 MESH:C000657245
337 17146-17154 Species denotes patients Tax:9606
338 17418-17426 Species denotes patients Tax:9606
339 17472-17480 Species denotes patients Tax:9606
340 17515-17522 Species denotes patient Tax:9606
341 17596-17604 Species denotes patients Tax:9606
342 17651-17659 Species denotes patients Tax:9606
343 17693-17701 Species denotes patients Tax:9606
344 17740-17748 Species denotes patients Tax:9606
345 17160-17168 Disease denotes COVID-19 MESH:C000657245
348 18245-18253 Species denotes patients Tax:9606
349 18259-18267 Disease denotes COVID-19 MESH:C000657245
351 18403-18427 Disease denotes coronavirus disease 2019 MESH:C000657245
356 17886-17894 Species denotes patients Tax:9606
357 18135-18143 Species denotes patients Tax:9606
358 17877-17885 Disease denotes COVID-19 MESH:C000657245
359 17913-17948 Disease denotes pulmonary parenchymal abnormalities MESH:D008171
371 18453-18461 Species denotes patients Tax:9606
372 18709-18716 Species denotes patient Tax:9606
373 19012-19020 Species denotes patients Tax:9606
374 19183-19191 Species denotes patients Tax:9606
375 19406-19414 Species denotes patients Tax:9606
376 18467-18475 Disease denotes COVID-19 MESH:C000657245
377 18835-18843 Disease denotes COVID-19 MESH:C000657245
378 19145-19153 Disease denotes COVID-19 MESH:C000657245
379 19197-19205 Disease denotes COVID-19 MESH:C000657245
380 19267-19302 Disease denotes pulmonary parenchymal abnormalities MESH:D008171
381 19506-19521 Disease denotes viral infection MESH:D001102
400 20094-20102 Species denotes patients Tax:9606
401 20179-20187 Species denotes patients Tax:9606
402 20249-20259 Species denotes SARS-CoV-2 Tax:2697049
403 20364-20377 Species denotes coronaviruses Tax:11118
404 20416-20424 Species denotes SARS-CoV Tax:694009
405 20461-20469 Species denotes MERS-CoV Tax:1335626
406 20580-20593 Species denotes coronaviruses Tax:11118
407 20662-20670 Species denotes patients Tax:9606
408 20718-20726 Species denotes patients Tax:9606
409 19740-19748 Disease denotes COVID-19 MESH:C000657245
410 19912-19930 Disease denotes pulmonary fibrosis MESH:D011658
411 19942-19959 Disease denotes pleural effusions MESH:D010996
412 20108-20116 Disease denotes COVID-19 MESH:C000657245
413 20170-20178 Disease denotes COVID-19 MESH:C000657245
414 20325-20351 Disease denotes acute respiratory syndrome MESH:D012120
415 20508-20524 Disease denotes viral infections MESH:D001102
416 20653-20661 Disease denotes COVID-19 MESH:C000657245
417 20903-20910 Disease denotes thrombi MESH:D013927
435 21355-21363 Species denotes patients Tax:9606
436 21719-21727 Species denotes MERS-CoV Tax:1335626
437 21956-21964 Species denotes patients Tax:9606
438 21996-22009 Species denotes coronaviruses Tax:11118
439 22239-22249 Species denotes SARS-CoV-2 Tax:2697049
440 22275-22283 Species denotes SARS-CoV Tax:694009
441 22462-22470 Species denotes patients Tax:9606
442 21200-21208 Disease denotes COVID-19 MESH:C000657245
443 21561-21572 Disease denotes hyperplasia MESH:D006965
444 21680-21688 Disease denotes COVID-19 MESH:C000657245
445 21699-21708 Disease denotes pneumonia MESH:D011014
446 21866-21882 Disease denotes pleural effusion MESH:D010996
447 21946-21955 Disease denotes pneumonia MESH:D011014
448 21965-21973 Disease denotes infected MESH:D007239
449 22055-22063 Disease denotes COVID-19 MESH:C000657245
450 22368-22376 Disease denotes COVID-19 MESH:C000657245
451 22499-22508 Disease denotes infection MESH:D007239
459 22926-22934 Species denotes patients Tax:9606
460 22994-23001 Species denotes patient Tax:9606
461 22589-22597 Disease denotes COVID-19 MESH:C000657245
462 22917-22925 Disease denotes COVID-19 MESH:C000657245
463 23017-23025 Disease denotes COVID-19 MESH:C000657245
464 23237-23245 Disease denotes COVID-19 MESH:C000657245
465 23293-23301 Disease denotes COVID-19 MESH:C000657245
474 24183-24191 Species denotes SARS-CoV Tax:694009
475 23415-23423 Disease denotes COVID-19 MESH:C000657245
476 23515-23523 Disease denotes COVID-19 MESH:C000657245
477 23625-23633 Disease denotes COVID-19 MESH:C000657245
478 24163-24172 Disease denotes pneumonia MESH:D011014
479 24264-24282 Disease denotes SARS-CoV infection MESH:C000657245
480 24431-24439 Disease denotes COVID-19 MESH:C000657245
481 24517-24525 Disease denotes COVID-19 MESH:C000657245
489 25499-25507 Species denotes patients Tax:9606
490 25678-25686 Species denotes patients Tax:9606
491 25745-25753 Species denotes patients Tax:9606
492 24894-24906 Disease denotes inflammation MESH:D007249
493 25018-25026 Disease denotes COVID-19 MESH:C000657245
494 25387-25395 Disease denotes COVID-19 MESH:C000657245
495 25614-25625 Disease denotes lung injury MESH:D055370
500 26578-26586 Species denotes patients Tax:9606
501 25805-25813 Disease denotes COVID-19 MESH:C000657245
502 25819-25832 Disease denotes novel disease MESH:C000657245
503 26432-26441 Disease denotes infection MESH:D007239
514 27038-27046 Species denotes patients Tax:9606
515 27151-27159 Species denotes patients Tax:9606
516 26678-26713 Disease denotes pulmonary parenchymal abnormalities MESH:D008171
517 26739-26747 Disease denotes COVID-19 MESH:C000657245
518 26843-26851 Disease denotes COVID-19 MESH:C000657245
519 26917-26925 Disease denotes COVID-19 MESH:C000657245
520 27000-27008 Disease denotes COVID-19 MESH:C000657245
521 27052-27059 Disease denotes dyspnea MESH:D004417
522 27064-27084 Disease denotes respiratory distress MESH:D012128
523 27165-27173 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T7 689-695 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T8 1479-1484 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T9 1539-1544 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T10 1618-1623 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T11 2035-2040 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T12 2362-2367 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T13 2991-2995 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 3886-3891 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T15 5276-5283 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T16 5291-5307 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T17 5303-5307 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T18 5315-5325 Body_part denotes neutrophil http://purl.org/sig/ont/fma/fma62860
T19 5333-5343 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T20 5351-5359 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T21 5367-5377 Body_part denotes hemoglobin http://purl.org/sig/ont/fma/fma62293
T22 5712-5717 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T23 6053-6058 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T24 6539-6543 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T25 7066-7070 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T26 7668-7682 Body_part denotes bronchial wall http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480
T28 7905-7915 Body_part denotes lymph node http://purl.org/sig/ont/fma/fma5034
T29 7968-7972 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T30 8153-8157 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T31 8212-8216 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T32 8256-8260 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T33 8911-8916 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T34 9802-9818 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T35 9814-9818 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T36 9826-9836 Body_part denotes neutrophil http://purl.org/sig/ont/fma/fma62860
T37 9844-9854 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T38 9862-9870 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T39 9878-9888 Body_part denotes hemoglobin http://purl.org/sig/ont/fma/fma62293
T40 10508-10524 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T41 10520-10524 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T42 10532-10542 Body_part denotes neutrophil http://purl.org/sig/ont/fma/fma62860
T43 10550-10560 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T44 10568-10576 Body_part denotes platelet http://purl.org/sig/ont/fma/fma62851
T45 10584-10594 Body_part denotes hemoglobin http://purl.org/sig/ont/fma/fma62293
T46 11359-11375 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T47 11371-11375 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T48 11424-11434 Body_part denotes Neutrophil http://purl.org/sig/ont/fma/fma62860
T49 11483-11493 Body_part denotes Lymphocyte http://purl.org/sig/ont/fma/fma62863
T50 11542-11550 Body_part denotes Platelet http://purl.org/sig/ont/fma/fma62851
T51 11605-11615 Body_part denotes Hemoglobin http://purl.org/sig/ont/fma/fma62293
T52 11771-11778 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T53 12629-12643 Body_part denotes bronchial wall http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480
T55 13516-13530 Body_part denotes Bronchial wall http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480
T57 14553-14568 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T58 14584-14600 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T59 14607-14622 Body_part denotes left upper lobe http://purl.org/sig/ont/fma/fma7370
T60 14629-14644 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T61 14799-14814 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T62 14858-14874 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T63 14905-14921 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T64 15022-15032 Body_part denotes right lung http://purl.org/sig/ont/fma/fma7309
T65 15085-15101 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T66 15108-15124 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T67 15131-15146 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T68 15342-15379 Body_part denotes posterior segment of right upper lobe http://purl.org/sig/ont/fma/fma7339
T69 15531-15547 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T70 15554-15571 Body_part denotes right middle lobe http://purl.org/sig/ont/fma/fma7383
T71 15578-15594 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T72 15601-15616 Body_part denotes left upper lobe http://purl.org/sig/ont/fma/fma7370
T73 15623-15638 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T74 15847-15852 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T75 15934-15939 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T76 15988-16004 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T77 16011-16028 Body_part denotes right middle lobe http://purl.org/sig/ont/fma/fma7383
T78 16035-16051 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T79 16058-16073 Body_part denotes left upper lobe http://purl.org/sig/ont/fma/fma7370
T80 16080-16095 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T81 16725-16729 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T82 16797-16801 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T83 16878-16882 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T84 18576-18581 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T85 19216-19221 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T86 19382-19387 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T87 19530-19543 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T88 19980-19985 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T89 20085-20090 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T90 20155-20159 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T91 20160-20166 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T92 20777-20793 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T93 20788-20793 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T94 20881-20887 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T95 20888-20893 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T96 20935-20949 Body_part denotes fibrous tissue http://purl.org/sig/ont/fma/fma63898
T97 21295-21299 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T98 21473-21477 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T99 21755-21760 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T100 21828-21832 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T101 22721-22725 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T102 22898-22903 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T103 22962-22967 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T104 23092-23097 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T105 23206-23210 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T106 23919-23938 Body_part denotes alveolar epithelium http://purl.org/sig/ont/fma/fma63915
T107 23928-23938 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T108 24045-24049 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T109 24050-24056 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T110 25614-25618 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T111 25971-25976 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T112 26625-26630 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T113 26801-26805 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 1479-1484 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 1539-1544 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 1618-1623 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 2035-2040 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T7 2362-2367 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 2991-2995 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 3886-3891 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T10 5297-5302 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T11 5712-5717 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T12 5922-5926 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T13 5955-5959 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T14 6053-6058 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T15 6283-6287 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T16 6316-6320 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T17 6539-6543 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T18 7066-7070 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T19 7245-7252 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T20 7905-7915 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T21 7905-7910 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T22 7988-8004 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T23 8153-8157 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T24 8212-8216 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 8256-8260 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T26 8471-8475 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T27 8548-8552 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T28 8581-8585 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T29 8615-8619 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T30 8649-8653 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T31 8693-8697 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T32 8911-8916 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T33 9808-9813 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T34 10514-10519 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T35 11365-11370 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T36 12403-12419 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T37 13657-13673 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T38 14564-14568 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T39 14596-14600 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T40 14618-14622 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T41 14640-14644 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T42 14810-14814 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T43 14870-14874 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T44 14917-14921 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T45 15022-15032 Body_part denotes right lung http://purl.obolibrary.org/obo/UBERON_0002167
T46 15028-15032 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T47 15097-15101 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T48 15120-15124 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T49 15142-15146 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T50 15375-15379 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T51 15543-15547 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T52 15567-15571 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T53 15590-15594 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T54 15612-15616 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T55 15634-15638 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T56 15956-15972 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T57 16000-16004 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T58 16024-16028 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T59 16047-16051 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T60 16069-16073 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T61 16091-16095 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T62 16725-16729 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T63 16797-16801 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T64 16878-16882 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T65 17216-17220 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T66 17806-17810 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T67 18576-18581 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T68 19216-19221 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T69 19382-19387 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T70 19530-19543 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T71 19942-19959 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T72 19980-19985 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T73 20155-20159 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T74 20160-20166 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T75 20881-20887 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T76 20943-20949 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T77 21295-21299 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T78 21473-21477 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T79 21755-21760 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T80 21828-21832 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T81 21866-21882 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T82 22721-22725 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T83 22898-22903 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T84 22962-22967 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T85 23206-23210 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T86 23928-23938 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483
T87 24045-24049 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T88 24050-24056 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T89 25614-25618 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T90 25971-25976 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T91 26625-26630 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T92 26801-26805 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T10 58-67 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 88-135 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T12 88-121 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T13 137-145 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 137-141 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 214-238 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T16 240-248 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 620-628 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 620-624 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 747-755 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 801-809 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 1253-1262 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 1294-1302 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 1294-1298 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 1561-1570 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T25 1651-1659 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 1672-1681 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 1709-1718 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 1758-1791 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T29 1805-1813 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 1805-1809 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 1875-1885 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T32 2124-2132 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 2202-2211 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 2391-2399 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 2703-2712 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T36 2738-2746 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 2738-2742 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 2784-2792 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 2929-2937 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 3395-3403 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 3584-3592 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 4066-4075 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T43 4275-4285 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T44 4401-4409 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 4553-4561 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 4629-4637 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T47 4629-4633 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 4704-4712 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 4704-4708 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 4715-4724 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T51 5446-5470 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T52 7730-7748 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T53 7888-7903 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T54 8382-8390 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 10145-10153 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T56 10220-10228 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T57 10326-10334 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 10326-10330 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T59 10782-10790 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 11719-11727 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 11729-11753 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T62 11809-11817 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T63 11851-11859 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T64 12492-12507 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T65 12513-12531 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T66 12983-12991 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 13618-13633 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T68 13718-13736 Disease denotes Pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T69 14238-14246 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 14248-14272 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T71 14304-14328 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T72 14683-14707 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T73 15185-15209 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T74 15676-15700 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T75 16564-16572 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T76 17067-17075 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 17116-17124 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T78 17160-17168 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 17877-17885 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T80 18259-18267 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T81 18393-18401 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T82 18403-18427 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T83 18467-18475 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T84 18835-18843 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T85 19145-19153 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 19197-19205 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T87 19506-19521 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T88 19512-19521 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T89 19740-19748 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T90 19912-19930 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T91 20108-20116 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T92 20170-20178 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T93 20249-20257 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 20249-20253 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T95 20318-20351 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T96 20353-20357 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T97 20416-20424 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T98 20416-20420 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T99 20508-20527 Disease denotes viral infections in http://purl.obolibrary.org/obo/MONDO_0005108
T100 20653-20661 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 20713-20717 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T102 20757-20763 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T103 21200-21208 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T104 21350-21354 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T105 21561-21572 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T106 21680-21688 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T107 21699-21708 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T108 21946-21955 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T109 22055-22063 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T110 22194-22198 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T111 22239-22247 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T112 22239-22243 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T113 22275-22283 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 22275-22279 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T115 22368-22376 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T116 22499-22508 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T117 22589-22597 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 22917-22925 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T119 23017-23025 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T120 23237-23245 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T121 23293-23301 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T122 23415-23423 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T123 23515-23523 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T124 23625-23633 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T125 24163-24172 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T126 24183-24191 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T127 24183-24187 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T128 24264-24282 Disease denotes SARS-CoV infection http://purl.obolibrary.org/obo/MONDO_0005091
T129 24264-24268 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T130 24273-24282 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T131 24431-24439 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T132 24517-24525 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T133 24894-24906 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T134 25018-25026 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T135 25387-25395 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T136 25544-25548 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T137 25619-25625 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T138 25648-25652 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T139 25805-25813 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T140 26432-26441 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T141 26739-26747 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T142 26843-26851 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T143 26917-26925 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T144 27000-27008 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T145 27165-27173 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 389-392 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 452-457 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 689-695 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T13 1144-1145 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1479-1484 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T15 1539-1544 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T16 1618-1623 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T17 2035-2040 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T18 2362-2367 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T19 2753-2756 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 2766-2767 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2818-2821 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T22 2991-2995 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T23 2991-2995 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T24 3638-3650 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T25 3711-3712 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3886-3891 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T27 4199-4201 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T28 4420-4422 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T29 4616-4617 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 4918-4920 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T31 5023-5025 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T32 5183-5185 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T33 5297-5302 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T34 5303-5307 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T35 5712-5717 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 5809-5810 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 5920-5921 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 5922-5926 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T39 5955-5959 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T40 5980-5981 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 6013-6014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 6053-6058 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T43 6182-6183 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 6252-6253 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 6281-6282 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 6283-6287 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T47 6316-6320 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T48 6341-6342 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 6369-6370 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 6400-6401 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 6539-6543 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T52 7066-7070 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T53 7066-7070 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T54 7156-7157 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 7245-7252 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T56 7257-7263 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T57 7272-7273 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 7375-7376 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 7401-7402 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 7441-7442 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 7550-7551 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 7611-7612 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 7655-7656 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 7695-7696 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7905-7915 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
T66 7988-8004 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T67 8153-8157 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T68 8153-8157 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T69 8212-8216 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T70 8212-8216 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T71 8256-8260 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T72 8256-8260 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T73 8306-8307 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 8494-8495 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 8911-8916 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T76 8956-8958 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T77 9422-9427 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T78 9493-9498 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T79 9557-9562 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T80 9615-9620 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T81 9639-9644 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T82 9808-9813 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T83 9814-9818 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T84 9993-9997 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T85 10007-10010 http://purl.obolibrary.org/obo/CLO_0001547 denotes a p
T86 10303-10304 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 10489-10493 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T88 10514-10519 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T89 10520-10524 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T90 10824-10826 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T91 10932-10936 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T92 10932-10936 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T93 10937-10939 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T94 11007-11009 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T95 11164-11166 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T96 11230-11233 http://purl.obolibrary.org/obo/CLO_0037284 denotes C 4
T97 11259-11261 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T98 11263-11266 http://purl.obolibrary.org/obo/CLO_0002105 denotes C 2
T99 11263-11266 http://purl.obolibrary.org/obo/CLO_0051742 denotes C 2
T100 11294-11299 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T101 11365-11370 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T102 11371-11375 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T103 11936-11940 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3, 4
T104 12097-12099 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T105 12174-12175 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 12290-12291 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 12338-12339 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 12403-12419 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T109 12605-12606 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 13025-13027 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T111 13105-13107 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T112 13221-13223 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T113 13232-13234 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T114 13657-13673 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T115 14076-14078 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T116 14132-14134 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T117 14194-14196 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T118 14278-14281 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2 A
T119 14294-14298 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T120 14294-14298 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T121 14355-14356 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 14459-14460 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T123 14657-14658 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T124 14659-14661 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T125 14671-14677 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T126 14734-14735 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 14923-14924 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T128 15022-15032 http://purl.obolibrary.org/obo/UBERON_0002167 denotes right lung
T129 15159-15160 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T130 15173-15179 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T131 15242-15243 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 15342-15351 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T133 15381-15382 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T134 15642-15644 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T135 15652-15653 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T136 15666-15670 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T137 15666-15670 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T138 15733-15734 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 15847-15852 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T140 15854-15855 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T141 15934-15939 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T142 15956-15972 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T143 16099-16101 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T144 16140-16141 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T145 16231-16232 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 16276-16278 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T147 16310-16311 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T148 16355-16357 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T149 16393-16394 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 16725-16729 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T151 16725-16729 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T152 16797-16801 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T153 16797-16801 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T154 16878-16882 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T155 16878-16882 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T156 17407-17409 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T157 17527-17528 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T158 17541-17543 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T159 17719-17721 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T160 18554-18556 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T161 18576-18581 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T162 18700-18702 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T163 18758-18761 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3–5
T164 18922-18925 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3–5
T165 19216-19221 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T166 19382-19387 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T167 19530-19543 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T168 19835-19836 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T169 19942-19959 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T170 19980-19985 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T171 20085-20090 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T172 20155-20159 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T173 20155-20159 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T174 20306-20309 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T175 20475-20477 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T176 20777-20787 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T177 20788-20793 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T178 20803-20811 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T179 20863-20864 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 20888-20893 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T181 20971-20977 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T182 20986-20992 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavity
T183 21295-21299 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T184 21295-21299 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T185 21473-21477 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T186 21473-21477 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T187 21755-21760 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T188 21828-21832 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T189 21828-21832 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T190 21846-21848 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T191 21866-21882 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T192 22721-22725 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T193 22721-22725 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T194 22898-22903 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T195 22962-22967 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T196 22980-22981 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T197 23092-23097 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T198 23206-23210 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T199 23206-23210 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T200 23215-23216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T201 23928-23938 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T202 23953-23958 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T203 24045-24049 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T204 24045-24049 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T205 24071-24072 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T206 25444-25445 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T207 25524-25525 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T208 25589-25590 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T209 25614-25618 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T210 25614-25618 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T211 25723-25731 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T212 25817-25818 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T213 25843-25844 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T214 25923-25924 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T215 25971-25976 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T216 26391-26396 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T217 26454-26459 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T218 26625-26630 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T219 26801-26805 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T220 26801-26805 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T221 26874-26875 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T222 26933-26934 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T6 902-915 Chemical denotes nucleic acids http://purl.obolibrary.org/obo/CHEBI_33696
T7 910-915 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T8 2433-2442 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T9 3938-3947 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T10 4486-4495 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T11 5016-5021 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T12 5148-5153 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T13 5276-5283 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T14 5367-5377 Chemical denotes hemoglobin http://purl.obolibrary.org/obo/CHEBI_35143
T15 9878-9888 Chemical denotes hemoglobin http://purl.obolibrary.org/obo/CHEBI_35143
T16 10584-10594 Chemical denotes hemoglobin http://purl.obolibrary.org/obo/CHEBI_35143
T17 10647-10652 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T18 10675-10680 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T19 10813-10818 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T20 10846-10851 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T21 11605-11615 Chemical denotes Hemoglobin http://purl.obolibrary.org/obo/CHEBI_5656
T22 11771-11778 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T23 12680-12685 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T24 12705-12710 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T25 12870-12875 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T26 13014-13019 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T27 13047-13052 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T28 14294-14298 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T29 14348-14353 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T30 14727-14732 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T31 15235-15240 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T32 15666-15670 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T33 15726-15731 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T34 17299-17304 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T35 17362-17367 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T36 17400-17405 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T37 17578-17583 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T38 17830-17835 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T39 17858-17863 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T40 19440-19449 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T41 24603-24608 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T42 24666-24671 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T43 24997-25006 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T44 25168-25177 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 58-67 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 1206-1213 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T3 1218-1238 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T4 1561-1570 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 1672-1681 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 1709-1718 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 2703-2712 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 4056-4075 Phenotype denotes pulmonary infection http://purl.obolibrary.org/obo/HP_0006532
T9 4265-4285 Phenotype denotes pulmonary infections http://purl.obolibrary.org/obo/HP_0006532
T10 4759-4764 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 4798-4803 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T12 4820-4829 Phenotype denotes dizziness http://purl.obolibrary.org/obo/HP_0002321
T13 4831-4847 Phenotype denotes nasal congestion http://purl.obolibrary.org/obo/HP_0001742
T14 4853-4860 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T15 7730-7748 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T16 7888-7903 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T17 7988-8004 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T18 9790-9795 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T19 10371-10376 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T20 10389-10404 Phenotype denotes low-grade fever http://purl.obolibrary.org/obo/HP_0011134
T21 11099-11104 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T22 12403-12419 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T23 12492-12507 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T24 12513-12531 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T25 13618-13633 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T26 13657-13673 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T27 13718-13736 Phenotype denotes Pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T28 15956-15972 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T29 19912-19930 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T30 19942-19959 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T31 21699-21708 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T32 21866-21882 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T33 21899-21918 Phenotype denotes tree-in-bud pattern http://purl.obolibrary.org/obo/HP_0032174
T34 21946-21955 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T35 24163-24172 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T36 27052-27059 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T37 27064-27084 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 523-544 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 531-544 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3 675-685 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T4 3768-3778 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T5 19506-19521 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T6 20492-20504 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T7 20508-20524 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T8 20812-20821 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T9 23880-23889 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T10 24894-24906 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

0_colil

Id Subject Object Predicate Lexical cue
32211963-32004427-62960 267-268 32004427 denotes 1
32211963-29052924-62962 1887-1888 29052924 denotes 8
32211963-31986261-62963 4914-4916 31986261 denotes 10
32211963-26218473-62964 7460-7462 26218473 denotes 13
32211963-18195376-62965 7464-7466 18195376 denotes 14
32211963-14990845-62966 8272-8274 14990845 denotes 15
32211963-14990845-62967 8422-8424 14990845 denotes 15
32211963-16055695-62968 8426-8428 16055695 denotes 16
32211963-31986261-62969 18696-18698 31986261 denotes 10
32211963-32007145-62970 20475-20477 32007145 denotes 18
32211963-29757717-62971 20994-20996 29757717 denotes 19
32211963-12738877-62972 21690-21692 12738877 denotes 20
32211963-25615627-62973 21842-21844 25615627 denotes 21
32211963-24918624-62974 21846-21848 24918624 denotes 22
32211963-31978293-62975 22285-22287 31978293 denotes 23
32211963-31986264-62976 22936-22937 31986264 denotes 7
32211963-14990845-62977 24390-24392 14990845 denotes 15
32211963-12853655-62978 25654-25656 12853655 denotes 24
32211963-31986264-62961 1505-1506 31986264 denotes 5
32211963-32007143-62961 1505-1506 32007143 denotes 5

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-12 Sentence denotes Introduction
T22 13-272 Sentence denotes Since December 2019, an increasing number of pneumonia cases caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) emerged in Wuhan, Hubei, China, and subsequently, an outbreak of coronavirus disease 2019 (COVID-19) swept the globe [1–4].
T23 273-437 Sentence denotes As of February 3, 2020, more than 23,214 suspected cases and 20,438 confirmed cases have been identified, and there has been over 425 deaths related to the illness.
T24 438-497 Sentence denotes Moreover, the virus is still spreading at an alarming rate.
T25 498-615 Sentence denotes In this sudden epidemic, reverse transcription polymerase chain reaction (RT-PCR) revealed the cause of the outbreak.
T26 616-711 Sentence denotes The SARS-CoV-2 can be specifically detected in respiratory secretions or plasma samples RT-PCR.
T27 712-940 Sentence denotes However, some patients with likely COVID-19 may have negative initial RT-PCR results for COVID-19, which may be due to insufficient cellular material for detection or improper extraction of nucleic acids from clinical materials.
T28 941-1239 Sentence denotes Thus, imaging examination, which can effectively and conveniently observe the pulmonary parenchymal abnormalities, can solve some challenges associated with clinical diagnosis in suspected patients with a false-negative result, especially symptomatic patients with dyspnea and respiratory distress.
T29 1240-1363 Sentence denotes Because this infection is caused by the unprecedented SARS-CoV-2, few related imaging studies have been currently reported.
T30 1364-1510 Sentence denotes Among the studies that have been conducted, multifocal consolidation or ground-glass opacity (GGO) was observed on chest radiographs and CT [5–7].
T31 1511-1890 Sentence denotes However, the sensitivity of chest radiographs for pneumonia are relatively low, and it is difficult to use chest radiographs to distinguish COVID-19 from common pneumonia during the cold season and pneumonia caused by other coronaviruses, such as severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV) infections [8].
T32 1891-1976 Sentence denotes In addition, the disease is developing rapidly and the symptoms of this disease vary.
T33 1977-2244 Sentence denotes Hence, it is very necessary to systematically analyze the chest CT findings associated with this disease systematically, for the timely isolation, COVID-19 RT-PCR and respiratory care of patients, and early implementation of infection prevention and control measures.
T34 2245-2518 Sentence denotes To fully understand and early discriminate the CT features of this disease in its early stages, we collected initial chest CT data from confirmed COVID-19 patients who did not receive any antiviral treatment mainly from Chongqing Three Gorges Central Hospital for analysis.
T35 2519-2802 Sentence denotes The Chongqing Three Gorges Central Hospital, located in the northeast of Chongqing and connected to Hubei Province, is one of the designated hospitals for the centralized treatment of pneumonia patients infected by the SARS-CoV-2 and has received a large number of COVID-19 patients.
T36 2803-3037 Sentence denotes Therefore, our aim was to systematically analyze the CT features of the early and progressive stages of the natural course of COVID-19 and explore the possible pathological changes in the lung during different periods of this disease.
T37 3039-3060 Sentence denotes Materials and methods
T38 3062-3080 Sentence denotes Study participants
T39 3081-3320 Sentence denotes This retrospective study was approved by the Institutional Ethics Committee of Chongqing Three Gorges Central Hospital and the Second Affiliated Hospital of Chongqing Medical University, and the requirement for informed consent was waived.
T40 3321-3565 Sentence denotes Between January 21 and February 4, 2020, totally 72 patients of confirmed COVID-19 were enrolled, i.e., 66 patients from Chongqing Three Gorges Central Hospital and 6 patients from the Second Affiliated Hospital of Chongqing Medical University.
T41 3566-3787 Sentence denotes All patients with COVID-19 were diagnosed according to the World Health Organization (WHO) interim guidance [9] and were eventually confirmed by a positive result for RT-PCR analysis of the respiratory secretions samples.
T42 3788-3958 Sentence denotes Confirmed patients were eligible if they experienced symptoms within 7 days, underwent an initial chest CT examination, and they had not received any antiviral treatment.
T43 3959-4208 Sentence denotes The exclusion criteria were as follows: (1) patients who recently experienced clinically defined pulmonary infection attributable to other pathogens, (2) patients with severe artifacts on CT images, and (3) patients whose age was less than 18 years.
T44 4209-4378 Sentence denotes According to the exclusion criteria, 7 patients who had pulmonary infections caused by other pathogens and 3 patients whose CT images had severe artifacts were excluded.
T45 4379-4536 Sentence denotes Finally, 62 confirmed COVID-19 patients (34 men, 28 women; age range 20–91 years old) who had not received antiviral treatment were retrospectively reviewed.
T46 4537-4600 Sentence denotes The workflow of COVID-19 patients selection is shown in Fig. 1.
T47 4601-4725 Sentence denotes Most cases had a history of SARS-CoV-2 exposure, in the absence of medical staff or family clusters of SARS-CoV-2 infection.
T48 4726-4861 Sentence denotes The main symptom of patients was fever, and secondary symptoms included cough, expectoration, dizziness, nasal congestion, and myalgia.
T49 4862-5200 Sentence denotes According to the changes in this disease over time [10, 11], in our study, we defined patients with an onset of symptoms within 4 days as the early-stage group (18 men, 16 women; age range 20–72 years old) and patients with an onset of symptoms within 5–7 days as the progressive-stage group (16 men, 12 women; age range 22–91 years old).
T50 5201-5422 Sentence denotes All patients underwent CT scans and laboratory examinations for C-reactive protein (CRP), white blood cell count, neutrophil count, lymphocyte count, platelet count, hemoglobin level, and procalcitonin level on admission.
T51 5423-5480 Sentence denotes Fig. 1 The workflow of coronavirus disease 2019 selection
T52 5482-5501 Sentence denotes CT data acquisition
T53 5502-5699 Sentence denotes Designated independent operating rooms were used to perform the CT examinations of all confirmed patients and after each examination; the operating room was sterilized with air disinfection method.
T54 5700-6040 Sentence denotes The initial chest CT data of 56 patients from Chongqing Three Gorges Central Hospital were obtained by using a 16-slice spiral CT scanner (Emotion 16 VC20B, Siemens Healthcare GmbH) with the following scanning protocol: a tube voltage of 120 kV, smart mA tube current modulation, a slice thickness of 1.5 mm, and a detector width of 1.5 mm.
T55 6041-6429 Sentence denotes The initial chest CT data of the other 6 patients from the Second Affiliated Hospital of Chongqing Medical University were obtained by using a 128-slice spiral CT scanner (Ingenuity CT, Philips Healthcare) with a similar scanning protocol: a tube voltage of 120 kV, smart mA tube current modulation, a matrix size of 512 × 512, a slice thickness of 1 mm, and a detector width of 0.625 mm.
T56 6430-6589 Sentence denotes All patients were scanned in the supine position and at the suspended end-inspiratory volume, and the entire lung was scanned from the apex to the bottom [12].
T57 6590-6762 Sentence denotes To reduce discrepancies in the image acquisition parameters attributable to the different CT scanners, we resampled all voxels at 1.0 × 1.0 × 1.0 mm3 before image analysis.
T58 6763-6894 Sentence denotes The multiplanar reconstruction (MPR) technique was performed to better observe images at the postprocessing station when necessary.
T59 6896-6912 Sentence denotes CT data analysis
T60 6913-7468 Sentence denotes All CT findings were described according to the Fleischner Society recommendations and defined as follows: GGO (appears as hazy increased opacity in the lung, with the preservation of bronchial and vascular margins), consolidation (appears as a homogeneous increase in pulmonary parenchymal attenuation that obscures the margins of vessels and airway walls), a crazy-paving pattern (appears as thickened interlobular septa and intralobular lines superimposed on a background of GGO), and a halo sign (appears as GGO surrounding a nodule or mass) [13, 14].
T61 7469-7849 Sentence denotes Attention was paid to CT images with GGO, consolidation, GGO with consolidation, a reticular pattern, nodules, rounded opacities, cavitation, a crazy-paving pattern, an air bronchogram, a halo sign, bronchial wall thickening, a subpleural curvilinear line, and pulmonary fibrosis, and the presence, distribution, and size of these CT characteristics were assessed in all subjects.
T62 7850-8038 Sentence denotes In addition, the presence of thoracic lymphadenopathy (lymph node size of greater than or equal to 10 mm in the short-axis dimension) and pleural effusion or thickening were also recorded.
T63 8039-8276 Sentence denotes The distribution of each finding was classified as follows: central (predominantly in the inner two-thirds of the lung), peripheral (predominantly in the outer third of the lung), and diffuse (indications in multiple lung segments) [15].
T64 8277-8430 Sentence denotes Calculation of the CT score, a semiquantitative evaluation method, was applied to quantify the extent of COVID-19 according to previous studies [15, 16].
T65 8431-8712 Sentence denotes First, the scope of the lesions in each lobe was estimated and a score of 0 (none), 1 (affecting less than 5% of the lobe), 2 (affecting 5–25% of the lobe), 3 (affecting 26–49% of the lobe), 4 (affecting 50–75% of the lobe), or 5 (affecting more than 75% of the lobe) was assigned.
T66 8713-8789 Sentence denotes Second, the CT score was obtained by adding up the scores of the five lobes.
T67 8790-8849 Sentence denotes For each patient, the CT score was in the range of 0 to 25.
T68 8850-9016 Sentence denotes All CT scans were independently reviewed and assessed by two chest radiologists (Z.F. and L.L.C., who had 18 years of experience in thoracic radiology, respectively).
T69 9017-9092 Sentence denotes Disagreements in reader interpretation were settled by consensus agreement.
T70 9094-9114 Sentence denotes Statistical analysis
T71 9115-9229 Sentence denotes All of the data were analyzed with statistical software (SPSS statistical package, version 19.0; IBM Corporation).
T72 9230-9402 Sentence denotes Continuous variables were expressed as means ± standard deviations or median (interquartile range (IQR)), and categorical variables were presented as numbers (percentages).
T73 9403-9477 Sentence denotes Kolmogorov-Smirnov tests were applied to check the normality of variables.
T74 9478-9543 Sentence denotes Mann-Whitney U tests were used for non-normally distributed data.
T75 9544-9603 Sentence denotes Two-sample t tests were used for normally distributed data.
T76 9604-9691 Sentence denotes Chi-square tests or Fisher’s exact tests were applied to compare categorical variables.
T77 9692-9984 Sentence denotes Spearman’s correlation was performed to analyze the relationship between clinical variables (age, fever, CRP, white blood cell count, neutrophil count, lymphocyte count, platelet count, hemoglobin level, and procalcitonin level) and CT variables (maximum diameter of the lesion and CT score).
T78 9985-10076 Sentence denotes For all test results, a p value of less than 0.05 was considered statistically significant.
T79 10078-10085 Sentence denotes Results
T80 10087-10153 Sentence denotes Demographic and clinical characteristics of patients with COVID-19
T81 10154-10255 Sentence denotes The demographic and clinical characteristics of all patients with COVID-19 are summarized in Table 1.
T82 10256-10413 Sentence denotes Among all 62 patients, 51 (82.3%) patients had a confirmed history of SARS-CoV-2 exposure, 43 (69.4%) patients had fever, and mainly low-grade fever (46.8%).
T83 10414-10696 Sentence denotes There were no significant differences in terms of age, sex, and laboratory test results (CRP, white blood cell count, neutrophil count, lymphocyte count, platelet count, hemoglobin level, procalcitonin level) between the early-stage group and progressive-stage group (all p > 0.05).
T84 10697-10790 Sentence denotes Table 1 Demographic and clinical characteristics between two groups in patients with COVID-19
T85 10791-10868 Sentence denotes Variables Early-stage group (n = 34) Progressive-stage group (n = 28) p value
T86 10869-10880 Sentence denotes Demographic
T87 10881-10929 Sentence denotes   Age, (years) 44.32 ± 13.53 50.82 ± 13.23 0.062
T88 10930-10968 Sentence denotes   Male 18 (52.9%) 16 (57.1%) 0.741 (χ)
T89 10969-10995 Sentence denotes Exposure history 0.494 (χ)
T90 10996-11028 Sentence denotes   Positive 27 (79.4%) 24 (85.7%)
T91 11029-11058 Sentence denotes   Negative 4 (11.8%) 1 (3.6%)
T92 11059-11087 Sentence denotes   Unknown 3 (8.8%) 3 (10.7%)
T93 11088-11096 Sentence denotes Symptoms
T94 11097-11141 Sentence denotes   Fever (°C) 37.70 ± 0.73 37.66 ± 0.94 0.854
T95 11142-11184 Sentence denotes   < 37.4 °C 8 (23.5%) 11 (39.3%) 0.064 (χ)
T96 11185-11218 Sentence denotes   37.4–38 °C 20 (58.8%) 9 (32.1%)
T97 11219-11251 Sentence denotes   38.1–39 °C 4 (11.8%) 6 (21.4%)
T98 11252-11282 Sentence denotes   39.1–41 °C 2 (5.9%) 2 (7.1%)
T99 11283-11299 Sentence denotes Laboratory tests
T100 11300-11356 Sentence denotes   CRP (mg/L) 15.98 (1.78–55.98) 35.62 (5.63–63.04) 0.329
T101 11357-11421 Sentence denotes   White blood cell count (× 109/L) 5.78 ± 1.93 6.24 ± 3.55 0.518
T102 11422-11480 Sentence denotes   Neutrophil count (× 109/L) 0.71 ± 0.13 0.74 ± 0.11 0.343
T103 11481-11539 Sentence denotes   Lymphocyte count (× 109/L) 1.04 ± 0.49 0.97 ± 0.46 0.541
T104 11540-11602 Sentence denotes   Platelet count (× 109/L) 180.79 ± 66.83 190.18 ± 73.91 0.602
T105 11603-11654 Sentence denotes   Hemoglobin (g/dL) 13.72 ± 1.79 13.69 ± 1.80 0.956
T106 11655-11718 Sentence denotes   Procalcitonin (ng/mL) 0.05 (0.04–0.07) 0.07 (0.04–0.11) 0.234
T107 11719-11778 Sentence denotes COVID-19, coronavirus disease 2019; CRP, C-reactive protein
T108 11780-11817 Sentence denotes CT findings in patients with COVID-19
T109 11818-11948 Sentence denotes The CT findings of patients with COVID-19 in early and progressive stages are listed in Table 2 and shown in Figs. 2, 3, 4, and 5.
T110 11949-12044 Sentence denotes In terms of CT characteristics, the major finding was the GGO in 38 (61.3%) of the 62 patients.
T111 12045-12571 Sentence denotes In addition, GGO with consolidation was observed in 22 (35.5%) patients; rounded opacities were observed in 16 (25.8%) patients; a crazy-paving pattern was observed in 16 (25.8%) patients; an air bronchogram was observed in 14 (22.6%) patients; a halo sign was observed in 7 (11.3%) patients; a subpleural curvilinear line was observed in 6 (9.7%) patients; pleural effusion was observed in 2 (3.2%) patients; and consolidation, nodules, thoracic lymphadenopathy, and pulmonary fibrosis were observed in 1 (1.6%) patient each.
T112 12572-12655 Sentence denotes No patient presented cavitation, a reticular pattern, or bronchial wall thickening.
T113 12656-12807 Sentence denotes Between the early-stage group and progress-stage group, there were no significant differences in the CT findings, except for the halo sign (p = 0.013).
T114 12808-12901 Sentence denotes Specifically, the halo sign was found in only the early-stage group in 20.6% of the patients.
T115 12902-12991 Sentence denotes Table 2 Comparison of CT findings and scores between two groups in patients with COVID-19
T116 12992-13069 Sentence denotes Variables Early-stage group (n = 34) Progressive-stage group (n = 28) p value
T117 13070-13081 Sentence denotes CT findings
T118 13082-13136 Sentence denotes   Ground-glass opacity 22 (64.7%) 16 (57.1%) 0.543 (χ)
T119 13137-13178 Sentence denotes   Consolidation 1 (2.9%) 0 (0%) 1.000 (χ)
T120 13179-13252 Sentence denotes   Ground-glass opacity with consolidation 11 (32.4%) 11 (39.3%) 0.570 (χ)
T121 13253-13278 Sentence denotes   Reticular pattern 0 0 –
T122 13279-13308 Sentence denotes   Nodule 1 (2.9%) 0 1.000 (χ)
T123 13309-13359 Sentence denotes   Rounded opacities 10 (29.4%) 6 (21.4%) 0.475 (χ)
T124 13360-13378 Sentence denotes   Cavitation 0 0 –
T125 13379-13431 Sentence denotes   Crazy-paving pattern 8 (23.5%) 8 (28.6%) 0.652 (χ)
T126 13432-13479 Sentence denotes   Air bronchogram 8 (23.5%) 6 (21.4%) 0.844 (χ)
T127 13480-13513 Sentence denotes   Halo sign 7 (20.6%) 0 0.013 (χ)
T128 13514-13547 Sentence denotes   Bronchial wall thickening 0 0 –
T129 13548-13606 Sentence denotes   Subpleural curvilinear line 4 (11.8%) 2 (7.1%) 0.681 (χ)
T130 13607-13654 Sentence denotes   Thoracic lymphadenopathy 0 1 (3.6%) 0.452 (χ)
T131 13655-13715 Sentence denotes   Pleural effusion or thickening 1 (2.9%) 1 (3.6%) 1.000 (χ)
T132 13716-13757 Sentence denotes   Pulmonary fibrosis 0 1 (3.6%) 0.452 (χ)
T133 13758-13817 Sentence denotes   Max diameter of lesion (cm) 4.27 ± 2.66 5.83 ± 3.76 0.059
T134 13818-13848 Sentence denotes     < 1 cm 0 1 (3.6) 0.201 (χ)
T135 13849-13882 Sentence denotes     1–2.9 cm 13 (38.2%) 5 (17.9%)
T136 13883-13917 Sentence denotes     3–4.9 cm 12 (35.3%) 10 (35.7%)
T137 13918-13949 Sentence denotes     > 5 cm 9 (26.5%) 12 (42.9%)
T138 13950-13962 Sentence denotes Distribution
T139 13963-14000 Sentence denotes   Central 1 (2.9%) 1 (3.6%) 0.961 (χ)
T140 14001-14034 Sentence denotes   Peripheral 12 (35.3%) 9 (32.1%)
T141 14035-14086 Sentence denotes   Both central and peripheral 21 (61.8%) 18 (64.3%)
T142 14087-14125 Sentence denotes CT score 4.79 ± 2.76 7.79 ± 4.62 0.004
T143 14126-14163 Sentence denotes   0–5 27 (79.4%) 10 (35.7%) 0.004 (χ)
T144 14164-14191 Sentence denotes   6–10 6 (17.6%) 12 (42.9%)
T145 14192-14211 Sentence denotes   11–15 0 3 (10.7%)
T146 14212-14237 Sentence denotes   > 15 1 (2.9%) 3 (10.7%)
T147 14238-14272 Sentence denotes COVID-19, coronavirus disease 2019
T148 14273-14569 Sentence denotes Fig. 2 A 56-year-old male with coronavirus disease 2019 in the early-stage group. a Axial non-contrast CT shows ground-glass opacities in the anterior segments of bilateral upper lobes. b Ground-glass opacity is also shown in the peripheral region of the lateral basal segment of left lower lobe.
T149 14570-14649 Sentence denotes CT score = 1 (right upper lobe) + 1 (left upper lobe) + 1 (left lower lobe) = 3
T150 14650-15070 Sentence denotes Fig. 3 A 34-year-old female with coronavirus disease 2019 in the early-stage group. a Axial non-contrast CT shows halo sign in the dorsal segment of left lower lobe and multiple ground-glass opacities in the right upper lobe and the dorsal segment of the right lower lobe. b Sagittal non-contrast CT demonstrates multiple ground-glass opacities with consolidations in the right lung, mainly distributed in the periphery.
T151 15071-15151 Sentence denotes CT score = 2 (right upper lobe) + 2 (right lower lobe) + 1 (left lower lobe) = 5
T152 15152-15516 Sentence denotes Fig. 4 A 40-year-old female with coronavirus disease 2019 in the progressive-stage group. a Axial non-contrast CT shows crazy-paving pattern in the anterior segment and consolidation in the posterior segment of right upper lobe. b Consolidations are noted in the bilateral lower lobes mainly in the peripheral regions, accompanied with subpleural curvilinear line.
T153 15517-15644 Sentence denotes CT score = 3 (right upper lobe) + 1 (right middle lobe) + 3 (right lower lobe) + 1 (left upper lobe) + 3 (left lower lobe) = 11
T154 15645-15973 Sentence denotes Fig. 5 A 60-year-old male with coronavirus disease 2019 in the progressive-stage group. a Axial non-contrast CT in pulmonary window shows diffuse ground-glass opacities with consolidations in bilateral lungs. b Axial non-contrast CT in mediastinal window shows consolidations in bilateral lungs, with bilateral pleural effusion.
T155 15974-16101 Sentence denotes CT score = 5 (right upper lobe) + 4 (right middle lobe) + 4 (right lower lobe) + 3 (left upper lobe) + 2 (left lower lobe) = 18
T156 16102-16458 Sentence denotes In terms of lesion size, lesions with a maximum diameter greater than 5 cm were found in 21 (33.9%) of 62 patients; lesions with a maximum diameter of 3–4.9 cm were found in 22 (35.5%) patients; lesions with a maximum diameter of 1–2.9 cm were found in 18 (29.0%) patients; and lesions with a maximum diameter less than 1 cm were found in 1 (1.6%) patient.
T157 16459-16585 Sentence denotes There was no statistically significant difference in lesion size between the two groups of patients with COVID-19 (p = 0.059).
T158 16586-16917 Sentence denotes Regarding the distribution of pulmonary parenchymal abnormalities, lesions that were mainly distributed in both the central and peripheral lung regions accounted for 62.9%; lesions distributed in the peripheral lung were present in 21 (33.9%) patients; and lesions distributed in the central lung were present in 2 (3.2%) patients.
T159 16918-17088 Sentence denotes There was no statistically significant difference in the distribution of pulmonary parenchymal abnormalities between the two groups of patients with COVID-19 (p = 0.961).
T160 17090-17124 Sentence denotes CT score of patients with COVID-19
T161 17125-17259 Sentence denotes The CT scores of all patients with COVID-19 are shown in Table 2 and the CT scores of each lobe in the two groups are shown in Fig. 6.
T162 17260-17380 Sentence denotes The CT scores of the progressive-stage group were significantly greater than those of the early-stage group (p = 0.004).
T163 17381-17552 Sentence denotes In the early-stage group, 27 (79.4%) patients had CT scores in the range of 0–5, 6 (17.6%) patients had CT scores of 6–10, and only 1 patient had a CT score of 11 or more.
T164 17553-17777 Sentence denotes In the progressive-stage group, 10 (35.7%) patients had CT scores in the range of 0–5, 12 (42.9%) patients had CT scores of 6–10, 3 (10.7%) patients had CT scores of 11–15, and 3 (10.7%) patients had CT scores of 15 or more.
T165 17778-17863 Sentence denotes Fig. 6 The CT score of each lobe in the early-stage group and progressive-stage group
T166 17864-18185 Sentence denotes Among all 62 COVID-19 patients, the CT scores of pulmonary parenchymal abnormalities were significantly positively correlated with maximum diameter of the lesions (r = 0.531, p < 0.001), and the CT scores were also significantly positively correlated with the age of the patients (r = 0.255, p = 0.045), shown in Table 3.
T167 18186-18267 Sentence denotes Table 3 Correlation of clinical variables with CT score in patients with COVID-19
T168 18268-18286 Sentence denotes Variables CT score
T169 18287-18298 Sentence denotes Age (years)
T170 18299-18314 Sentence denotes   p value 0.045
T171 18315-18330 Sentence denotes   r value 0.255
T172 18331-18358 Sentence denotes Max diameter of lesion (cm)
T173 18359-18376 Sentence denotes   p value < 0.001
T174 18377-18392 Sentence denotes   r value 0.531
T175 18393-18427 Sentence denotes COVID-19, coronavirus disease 2019
T176 18429-18439 Sentence denotes Discussion
T177 18440-18558 Sentence denotes As reported, patients with COVID-19 usually develop clinical symptoms after an incubation period of 4.1–7.0 days [11].
T178 18559-18624 Sentence denotes After admission, chest imaging examination was performed on them.
T179 18625-18993 Sentence denotes According to the results of changes in this disease in recent studies [10, 11], the patient’s condition progressively worsens on the 3–5 days after symptom onset, and the guidelines for an imaging diagnosis of COVID-19 recommend that reviewing CT or plain radiograph is needed for suspected cases 3–5 days after diagnosis to observe changes in the disease status [12].
T180 18994-19154 Sentence denotes Thus, we assigned patients to two groups according to the time of onset of symptoms to analyze the CT findings in early-stage and progressive-stage of COVID-19.
T181 19155-19312 Sentence denotes In this study, 62 confirmed patients with COVID-19 underwent chest CT scans, and positive rate of detecting the pulmonary parenchymal abnormalities was 100%.
T182 19313-19697 Sentence denotes In addition, the CT data in our study were obtained from the initial chest CT examination of patients who had not received any antiviral therapy; these results may better reflect the degree of viral infection and the immune system status before clinical intervention and provide an important basis for clinical classification, treatment strategy development, and prognosis prediction.
T183 19698-19898 Sentence denotes In our study, the major characteristic of COVID-19 was GGO (61.3%), followed by GGO with consolidation (35.5%), rounded opacity (25.8%), a crazy-paving pattern (25.8%), and an air bronchogram (22.6%).
T184 19899-19996 Sentence denotes In contrast, pulmonary fibrosis (1.6%) and pleural effusions (3.2%) were rare on chest CT images.
T185 19997-20117 Sentence denotes These various CT findings are likely related to the complex pathological changes in the lungs of patients with COVID-19.
T186 20118-20479 Sentence denotes Although pathological changes in the lung tissue of COVID-19 patients have not yet been studied, recent studies have reported that SARS-CoV-2 is closely related (with 88% identity) to two bat-derived severe acute respiratory syndrome (SARS)–like coronaviruses, with approximately 79% homology with SARS-CoV and approximately 50% homology with MERS-CoV [17, 18].
T187 20480-20709 Sentence denotes Because the pathogenesis of viral infections in the same family may be similar, previous studies on coronaviruses may be helpful in understanding the various CT findings in COVID-19 patients based on similar pathological changes.
T188 20710-20998 Sentence denotes In SARS patients, pathological changes include injury to pulmonary epithelial cells, hyaline membrane formation on in the inner wall of the alveoli, and a large number of tissue cells and mass thrombi formed by proliferative fibrous tissue that block the small airway and air cavity [19].
T189 20999-21100 Sentence denotes These pathological changes may be the main pathological basis of the CT findings, especially the GGO.
T190 21101-21308 Sentence denotes Among all the CT findings, GGO was the most common one in both the early and progressive stages of COVID-19 and was characterized by multiple sized lesions, mainly distributed in the peripheral lung (96.8%).
T191 21309-21619 Sentence denotes An analysis of thin-section CT images of SARS patients showed that multiple GGOs were the main imaging finding (68.4%) and were distributed in the periphery of the lung (71.8%), with interlobular septal thickening (24.2%) and intralobular interstitial hyperplasia (32.2%), also called the crazy-paving pattern.
T192 21620-21694 Sentence denotes These findings are very similar to the CT manifestations of COVID-19 [20].
T193 21695-21850 Sentence denotes For pneumonia caused by MERS-CoV, GGO was also found on the chest CT images and was mainly distributed in the subpleural and basilar lung regions [21, 22].
T194 21851-22010 Sentence denotes Interestingly, pleural effusion was rare and no tree-in-bud pattern or cavitation was found in pneumonia patients infected by the three kinds of coronaviruses.
T195 22011-22110 Sentence denotes In addition, we found that only one case of COVID-19 (1.6%) presented as consolidation without GGO.
T196 22111-22289 Sentence denotes Compared with the large amount of consolidation that appears in the early stage of SARS, we speculate that the pathogenicity of SARS-CoV-2 may be less than that of SARS-CoV [23].
T197 22290-22529 Sentence denotes Thus, it is necessary to fully understand and discriminate the CT features of COVID-19 at an early stage, which is helpful for the timely isolation and respiratory care of patients and early implementation of infection prevention measures.
T198 22530-22726 Sentence denotes In addition to GGO, another important CT characteristic of COVID-19 was multiple GGOs with consolidations, accompanied by interlobular septal thickening, mainly in the peripheral part of the lung.
T199 22727-22939 Sentence denotes These basic CT features were similar to the findings reported by Huang et al, whose study showed that multiple GGOs with partial consolidation appeared bilaterally on the chest CT images of COVID-19 patients [7].
T200 22940-23113 Sentence denotes Similarly, in another chest CT study of a 33-year-old patient diagnosed with COVID-19 in Wuhan, China, multiple GGOs distributed in both the peripheral lungs were found [5].
T201 23114-23302 Sentence denotes Therefore, we suggest that multiple GGOs with consolidations mainly in the periphery of the lung are a basic CT feature of COVID-19, which is helpful for the initial screening of COVID-19.
T202 23303-23450 Sentence denotes Unexpectedly, the halo sign (20.6%) was the only significantly different CT manifestation in the early stage of COVID-19 among all the CT findings.
T203 23451-23524 Sentence denotes In our study, the halo sign appeared in only the early stage of COVID-19.
T204 23525-23696 Sentence denotes We hypothesized that the halo sign rapidly changed into GGO within 1 week due to the aggravation of COVID-19, and no other new halo sign had been formed in the short term.
T205 23697-23823 Sentence denotes In addition, there were no significant differences in the other CT findings or distribution of lesions between the two stages.
T206 23824-24159 Sentence denotes For these findings, we speculated that the speed of GGO formation was due to the damage to the alveolar epithelium caused by the virus and may be similar to that of consolidation caused by an inflammatory reaction of the lung tissue, resulting in a change in different types of lesions during the synchronous increase in opacification.
T207 24160-24394 Sentence denotes In pneumonia caused by SARS-CoV, Ooi et al found that GGO and consolidation formed in the first week of SARS-CoV infection increased in the second week, and only residual strips and reticular shadows were seen in the fourth week [15].
T208 24395-24526 Sentence denotes Therefore, the CT manifestations of COVID-19 are different at different stages, which helps the differential diagnosis of COVID-19.
T209 24527-24672 Sentence denotes Furthermore, our results showed that the CT scores in the progressive-stage group were significantly greater than those in the early-stage group.
T210 24673-24953 Sentence denotes Further analysis showed that the CT scores were positively correlated with the maximum diameters of the lesions (r = 0.531), indicating that the range of lesions in the progressive stage was larger than and the degree of inflammation was more serious than that in the early stage.
T211 24954-25117 Sentence denotes These results also showed that without any antiviral treatment, COVID-19 continued to progress 5–7 days after the onset of symptoms, without any improvement trend.
T212 25118-25260 Sentence denotes Therefore, necessary clinical measures, including antiviral and supportive therapies, should be administered to prevent disease deterioration.
T213 25261-25416 Sentence denotes Because of the lack of additional data, the correlation between the CT score and clinical classification and the prognosis of COVID-19 needs further study.
T214 25417-25520 Sentence denotes Moreover, CT scores showed a significant positive correlation with ages in all 62 patients (r = 0.255).
T215 25521-25658 Sentence denotes In a previous study on SARS, Grinblat et al considered that age was a risk factor for severe lung injury and poor prognosis of SARS [24].
T216 25659-25754 Sentence denotes Therefore, elderly patients need to be treated earlier and more actively than younger patients.
T217 25755-25789 Sentence denotes Our study had several limitations.
T218 25790-25948 Sentence denotes First, because COVID-19 is a novel disease and lacks a series and long-term CT data, we can analyze only the existing information in a retrospective analysis.
T219 25949-26133 Sentence denotes Moreover, the time of chest CT examination after symptom onset was inconsistent, so it was difficult to summarize the CT appearances that could reflect the whole course of the disease.
T220 26134-26268 Sentence denotes Second, the sample size in our study was relatively small, and there may be deviation in the comparison of the results of CT findings.
T221 26269-26344 Sentence denotes Third, most of our cases were imported cases and some were secondary cases.
T222 26345-26514 Sentence denotes Further research is needed to observe whether virus variation exists in the process of infection and whether virus variation will produce different in CT manifestations.
T223 26515-26587 Sentence denotes Finally, there was no histopathological evidence from deceased patients.
T224 26588-26748 Sentence denotes In conclusion, our study showed that chest CT examination was very effective in detecting pulmonary parenchymal abnormalities in the natural course of COVID-19.
T225 26749-26852 Sentence denotes Multiple GGOs with consolidations in the peripheral lung was the primary CT characteristic of COVID-19.
T226 26853-27034 Sentence denotes The halo sign may be a special CT feature in the early stage of COVID-19, while a significantly increased CT score may indicate the aggravation of COVID-19 in the progressive stage.
T227 27035-27174 Sentence denotes In patients with dyspnea and respiratory distress, CT examination is very effective in the preclinical screening of patients with COVID-19.

TEST0

Id Subject Object Predicate Lexical cue
32211963-233-238-62960 267-268 ["32004427"] denotes 1
32211963-141-146-62961 1505-1506 ["32007143", "31986264"] denotes 5
32211963-236-241-62962 1887-1888 ["29052924"] denotes 8
32211963-188-194-62963 4914-4916 ["31986261"] denotes 10
32211963-230-236-62964 7460-7462 ["26218473"] denotes 13
32211963-234-240-62965 7464-7466 ["18195376"] denotes 14
32211963-233-239-62966 8272-8274 ["14990845"] denotes 15
32211963-145-151-62967 8422-8424 ["14990845"] denotes 15
32211963-149-155-62968 8426-8428 ["16055695"] denotes 16
32211963-137-143-62969 18696-18698 ["31986261"] denotes 10
32211963-231-237-62970 20475-20477 ["32007145"] denotes 18
32211963-237-243-62971 20994-20996 ["29757717"] denotes 19
32211963-70-76-62972 21690-21692 ["12738877"] denotes 20
32211963-147-153-62973 21842-21844 ["25615627"] denotes 21
32211963-151-157-62974 21846-21848 ["24918624"] denotes 22
32211963-174-180-62975 22285-22287 ["31978293"] denotes 23
32211963-209-214-62976 22936-22937 ["31986264"] denotes 7
32211963-230-236-62977 24390-24392 ["14990845"] denotes 15
32211963-133-139-62978 25654-25656 ["12853655"] denotes 24

2_test

Id Subject Object Predicate Lexical cue
32211963-32004427-29369851 267-268 32004427 denotes 1
32211963-32007143-29369852 1505-1506 32007143 denotes 5
32211963-31986264-29369852 1505-1506 31986264 denotes 5
32211963-29052924-29369853 1887-1888 29052924 denotes 8
32211963-31986261-29369854 4914-4916 31986261 denotes 10
32211963-26218473-29369855 7460-7462 26218473 denotes 13
32211963-18195376-29369856 7464-7466 18195376 denotes 14
32211963-14990845-29369857 8272-8274 14990845 denotes 15
32211963-14990845-29369858 8422-8424 14990845 denotes 15
32211963-16055695-29369859 8426-8428 16055695 denotes 16
32211963-31986261-29369860 18696-18698 31986261 denotes 10
32211963-32007145-29369861 20475-20477 32007145 denotes 18
32211963-29757717-29369862 20994-20996 29757717 denotes 19
32211963-12738877-29369863 21690-21692 12738877 denotes 20
32211963-25615627-29369864 21842-21844 25615627 denotes 21
32211963-24918624-29369865 21846-21848 24918624 denotes 22
32211963-31978293-29369866 22285-22287 31978293 denotes 23
32211963-31986264-29369867 22936-22937 31986264 denotes 7
32211963-14990845-29369868 24390-24392 14990845 denotes 15
32211963-12853655-29369869 25654-25656 12853655 denotes 24

MyTest

Id Subject Object Predicate Lexical cue
32211963-32004427-29369851 267-268 32004427 denotes 1
32211963-32007143-29369852 1505-1506 32007143 denotes 5
32211963-31986264-29369852 1505-1506 31986264 denotes 5
32211963-29052924-29369853 1887-1888 29052924 denotes 8
32211963-31986261-29369854 4914-4916 31986261 denotes 10
32211963-26218473-29369855 7460-7462 26218473 denotes 13
32211963-18195376-29369856 7464-7466 18195376 denotes 14
32211963-14990845-29369857 8272-8274 14990845 denotes 15
32211963-14990845-29369858 8422-8424 14990845 denotes 15
32211963-16055695-29369859 8426-8428 16055695 denotes 16
32211963-31986261-29369860 18696-18698 31986261 denotes 10
32211963-32007145-29369861 20475-20477 32007145 denotes 18
32211963-29757717-29369862 20994-20996 29757717 denotes 19
32211963-12738877-29369863 21690-21692 12738877 denotes 20
32211963-25615627-29369864 21842-21844 25615627 denotes 21
32211963-24918624-29369865 21846-21848 24918624 denotes 22
32211963-31978293-29369866 22285-22287 31978293 denotes 23
32211963-31986264-29369867 22936-22937 31986264 denotes 7
32211963-14990845-29369868 24390-24392 14990845 denotes 15
32211963-12853655-29369869 25654-25656 12853655 denotes 24