PMC:7095246 / 5683-7198
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T7 | 1110-1120 | Body_part | denotes | lymph node | http://purl.org/sig/ont/fma/fma5034 |
| T8 | 1146-1150 | Body_part | denotes | axis | http://purl.org/sig/ont/fma/fma12520 |
| T9 | 1194-1198 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T10 | 1256-1260 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T11 | 1338-1342 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T7 | 1039-1055 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T8 | 1110-1120 | Body_part | denotes | lymph node | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T9 | 1110-1115 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T10 | 1194-1198 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T11 | 1256-1260 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T12 | 1338-1342 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T13 | 1485-1492 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T31 | 1082-1097 | Disease | denotes | lymphadenopathy | http://purl.obolibrary.org/obo/MONDO_0005833 |
| T32 | 1194-1206 | Disease | denotes | lung disease | http://purl.obolibrary.org/obo/MONDO_0005275 |
| T33 | 1215-1227 | Disease | denotes | tuberculosis | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T34 | 1229-1238 | Disease | denotes | emphysema | http://purl.obolibrary.org/obo/MONDO_0004849 |
| T35 | 1243-1268 | Disease | denotes | interstitial lung disease | http://purl.obolibrary.org/obo/MONDO_0015925 |
| T36 | 1256-1268 | Disease | denotes | lung disease | http://purl.obolibrary.org/obo/MONDO_0005275 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T33 | 74-81 | http://www.ebi.ac.uk/efo/EFO_0000881 | denotes | digital |
| T34 | 378-379 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T35 | 466-467 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T36 | 1037-1038 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T37 | 1039-1055 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T38 | 1110-1120 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph node |
| T39 | 1194-1198 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T40 | 1194-1198 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T41 | 1256-1260 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T42 | 1256-1260 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T43 | 1338-1342 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T44 | 1338-1342 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T45 | 1485-1492 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessels |
| T46 | 1497-1503 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airway |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T7 | 1039-1055 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
| T8 | 1082-1097 | Phenotype | denotes | lymphadenopathy | http://purl.obolibrary.org/obo/HP_0002716 |
| T9 | 1194-1206 | Phenotype | denotes | lung disease | http://purl.obolibrary.org/obo/HP_0002088 |
| T10 | 1229-1238 | Phenotype | denotes | emphysema | http://purl.obolibrary.org/obo/HP_0002097 |
| T11 | 1243-1268 | Phenotype | denotes | interstitial lung disease | http://purl.obolibrary.org/obo/HP_0006530 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T59 | 0-20 | Sentence | denotes | Image interpretation |
| T60 | 21-121 | Sentence | denotes | Image analysis was performed using the institutional digital database system (Neusoft V5.5.4.50720). |
| T61 | 122-230 | Sentence | denotes | All CT images were reviewed by two radiologists with 5 and 3 years of experience in imaging (Y.F. and W.L.). |
| T62 | 231-307 | Sentence | denotes | Imaging was reviewed independently and final decisions reached by consensus. |
| T63 | 308-483 | Sentence | denotes | For disagreement between the two primary radiologist interpretations, a third experienced thoracic radiologist with 17 years of experience (K.L.) adjudicated a final decision. |
| T64 | 484-524 | Sentence | denotes | No negative control cases were examined. |
| T65 | 525-1280 | Sentence | denotes | For each of the 78 patients, the CT scan was evaluated for the following characteristics: (1) distribution: presence of peripheral or peribronchovascular; (2) density: presence of ground-glass opacities, mixed ground-glass opacities, or consolidation; (3) internal structures: presence of air bronchogram, interlobular septal thickening, cavitation; (4) number of lobes affected by ground-glass or consolidative opacities; (5) presence of fibrotic lesions; (6) presence of centrilobular nodules; (7) presence of a pleural effusion; (8) presence of thoracic lymphadenopathy (defined as lymph node size of ≥ 10 mm in short-axis dimension); and (9) presence of underlying lung disease such as tuberculosis, emphysema, or interstitial lung disease were noted. |
| T66 | 1281-1515 | Sentence | denotes | Ground-glass opacification was defined as hazy increased lung attenuation with preservation of bronchial and vascular margins and consolidation was defined as opacification with obscuration of margins of vessels and airway walls [14]. |
0_colil
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32215691-18195376-53397 | 1511-1513 | 18195376 | denotes | 14 |
TEST0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32215691-230-236-53397 | 1511-1513 | ["18195376"] | denotes | 14 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32215691-18195376-29361452 | 1511-1513 | 18195376 | denotes | 14 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32215691-18195376-29361452 | 1511-1513 | 18195376 | denotes | 14 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 86 | 544-552 | Species | denotes | patients | Tax:9606 |
| 87 | 964-980 | Disease | denotes | fibrotic lesions | MESH:D001768 |
| 88 | 1039-1055 | Disease | denotes | pleural effusion | MESH:D010996 |
| 89 | 1082-1097 | Disease | denotes | lymphadenopathy | MESH:D008206 |
| 90 | 1194-1206 | Disease | denotes | lung disease | MESH:D008171 |
| 91 | 1215-1227 | Disease | denotes | tuberculosis | MESH:D014376 |
| 92 | 1229-1238 | Disease | denotes | emphysema | MESH:D004646 |
| 93 | 1243-1268 | Disease | denotes | interstitial lung disease | MESH:D017563 |