PMC:7095246 / 18814-21433
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T63 | 187-191 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T64 | 1404-1409 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T65 | 2053-2057 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
| T66 | 2084-2094 | Body_part | denotes | leukocytes | http://purl.org/sig/ont/fma/fma62852 |
| T67 | 2111-2122 | Body_part | denotes | lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
| T68 | 2287-2292 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T62 | 187-191 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T63 | 233-237 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T64 | 1240-1256 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T65 | 1331-1347 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T66 | 1404-1409 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T67 | 1862-1879 | Body_part | denotes | pleural effusions | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T68 | 2287-2292 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T85 | 125-137 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T86 | 192-204 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T87 | 377-389 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T88 | 1165-1173 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
| T89 | 1208-1217 | Disease | denotes | emphysema | http://purl.obolibrary.org/obo/MONDO_0004849 |
| T90 | 1299-1308 | Disease | denotes | emphysema | http://purl.obolibrary.org/obo/MONDO_0004849 |
| T91 | 1399-1418 | Disease | denotes | high blood pressure | http://purl.obolibrary.org/obo/MONDO_0005044 |
| T92 | 2420-2423 | Disease | denotes | TSS | http://purl.obolibrary.org/obo/MONDO_0001881 |
| T93 | 2578-2592 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T145 | 37-38 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T146 | 91-92 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T147 | 187-191 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T148 | 187-191 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T149 | 562-563 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T150 | 651-652 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T151 | 711-712 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T152 | 901-903 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
| T153 | 1011-1012 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T154 | 1044-1045 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T155 | 1144-1145 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T156 | 1146-1152 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | female |
| T157 | 1222-1223 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T158 | 1240-1256 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T159 | 1272-1273 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T160 | 1286-1292 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | female |
| T161 | 1313-1314 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T162 | 1331-1347 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T163 | 1387-1393 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | female |
| T164 | 1404-1409 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T165 | 1404-1409 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T166 | 1439-1440 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T167 | 1453-1457 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T168 | 1453-1457 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T169 | 1651-1652 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T170 | 1665-1671 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | female |
| T171 | 1862-1879 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusions |
| T172 | 1926-1936 | http://purl.obolibrary.org/obo/PR_000001898 | denotes | call for a |
| T173 | 1970-1971 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T174 | 1984-1988 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T175 | 1984-1988 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T176 | 2051-2052 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T177 | 2287-2292 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T178 | 2304-2305 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T14 | 1453-1457 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T15 | 1984-1988 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 125-137 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
| T5 | 192-204 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
| T6 | 377-389 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T54 | 1208-1217 | Phenotype | denotes | emphysema | http://purl.obolibrary.org/obo/HP_0002097 |
| T55 | 1240-1256 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
| T56 | 1299-1308 | Phenotype | denotes | emphysema | http://purl.obolibrary.org/obo/HP_0002097 |
| T57 | 1331-1347 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
| T58 | 1399-1418 | Phenotype | denotes | high blood pressure | http://purl.obolibrary.org/obo/HP_0000822 |
| T59 | 1862-1879 | Phenotype | denotes | pleural effusions | http://purl.obolibrary.org/obo/HP_0002202 |
| T60 | 2030-2035 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T61 | 2040-2045 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T62 | 2569-2592 | Phenotype | denotes | traction bronchiectasis | http://purl.obolibrary.org/obo/HP_0032969 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T217 | 0-33 | Sentence | denotes | CT visual quantitative evaluation |
| T218 | 34-330 | Sentence | denotes | In a recent study done by Michael et al, they introduced a method to score the severity of inflammation on CT images based on summing up degree of acute lung inflammation lesions involvement of each lobe (including ground-glass opacity or consolidation or other fuzzy interstitial opacities) [9]. |
| T219 | 331-436 | Sentence | denotes | We used the same method to quantify pulmonary inflammation and correlate to the clinical classifications. |
| T220 | 437-537 | Sentence | denotes | There was significant difference in scores between common type and severe-critical type (p < 0.001). |
| T221 | 538-725 | Sentence | denotes | However, there was also a score overlap between the two groups, which showed that 8 cases in the common type had a higher score, and 5 cases in the severe-critical type had a lower score. |
| T222 | 726-970 | Sentence | denotes | Among 8 cases of common type, 7 cases had fibrotic lesions which indicated that the lesions began to be repaired, and all of the 8 patients were less than 70 years old (range 36–65, average 52.5 years), none of them had pulmonary complications. |
| T223 | 971-1073 | Sentence | denotes | The specific situation of 5 patients in a severe-critical type which had a lower score was as follows: |
| T224 | 1074-1632 | Sentence | denotes | 3 of the 5 patients were over 70 years old; among them, 1 patient was a female smoker with diabetes, aged 80 years old, with moderate emphysema and a small amount of pleural effusion; 1 patient was a 70-year-old female, with emphysema and a small amount of pleural effusion as well; the other one was 75-year-old female with high blood pressure; the forth case was a 44-year-old male without any underlying disease; however, CT images showed only progressive lesions such as ground-glass opacification and consolidation without any fibrotic lesions (Fig. 5). |
| T225 | 1633-1775 | Sentence | denotes | The last case was a 58-year-old female without any underlying disease; further analysis was needed to find out the cause of clinical severity. |
| T226 | 1776-1962 | Sentence | denotes | Overall, we believe that many factors, such as advanced age, underlying diseases, and pleural effusions, would relate to the clinical severity, which call for a comprehensive evaluation. |
| T227 | 1963-2079 | Sentence | denotes | Fig. 5 A 44-year-old male was admitted to the hospital 1 day after fever and cough with a body temperature of 39 °C. |
| T228 | 2080-2138 | Sentence | denotes | The leukocytes were normal and lymphocytes were decreased. |
| T229 | 2139-2256 | Sentence | denotes | He was living in Zhuhai and traveled to Macao 12 days before the onset of the disease and stayed in Macao for 1 week. |
| T230 | 2257-2286 | Sentence | denotes | He was healthy and nonsmoker. |
| T231 | 2287-2419 | Sentence | denotes | Chest CT (images a–c) on the 4th day after admission demonstrated bilateral peripheral ground-glass opacities without consolidation. |
| T232 | 2420-2430 | Sentence | denotes | TSS was 9. |
| T233 | 2431-2474 | Sentence | denotes | The clinical type was severe-critical type. |
| T234 | 2475-2619 | Sentence | denotes | Follow-up CT (images d, e) on the 22nd day after onset showed bilateral fibrotic changes with traction bronchiectasis and ground-grass opacities |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 244 | 2030-2035 | Disease | denotes | fever | MESH:D005334 |
| 245 | 2040-2045 | Disease | denotes | cough | MESH:D003371 |
| 263 | 857-865 | Species | denotes | patients | Tax:9606 |
| 264 | 999-1007 | Species | denotes | patients | Tax:9606 |
| 265 | 1085-1093 | Species | denotes | patients | Tax:9606 |
| 266 | 1132-1139 | Species | denotes | patient | Tax:9606 |
| 267 | 1260-1267 | Species | denotes | patient | Tax:9606 |
| 268 | 125-137 | Disease | denotes | inflammation | MESH:D007249 |
| 269 | 181-204 | Disease | denotes | acute lung inflammation | MESH:D011014 |
| 270 | 367-389 | Disease | denotes | pulmonary inflammation | MESH:D011014 |
| 271 | 768-784 | Disease | denotes | fibrotic lesions | MESH:D001768 |
| 272 | 946-969 | Disease | denotes | pulmonary complications | MESH:D008171 |
| 273 | 1165-1173 | Disease | denotes | diabetes | MESH:D003920 |
| 274 | 1208-1217 | Disease | denotes | emphysema | MESH:D004646 |
| 275 | 1240-1256 | Disease | denotes | pleural effusion | MESH:D010996 |
| 276 | 1299-1308 | Disease | denotes | emphysema | MESH:D004646 |
| 277 | 1331-1347 | Disease | denotes | pleural effusion | MESH:D010996 |
| 278 | 1606-1622 | Disease | denotes | fibrotic lesions | MESH:D001768 |
| 279 | 1862-1879 | Disease | denotes | pleural effusions | MESH:D010996 |