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PMC:7094172 / 8581-10117 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T669 26-34 SP_9 denotes MERS-CoV
T668 71-79 SP_9 denotes MERS-CoV
T667 210-222 GO:0046983 denotes dimerization
T666 290-298 SP_9 denotes MERS-CoV
T665 307-319 GO:0051260 denotes Dimerization
T664 342-348 SO:0000440 denotes vector
T663 875-881 SO:0000440 denotes vector
T662 1156-1162 SO:0000440 denotes vector
T661 1430-1448 SO:0000366 denotes substitution sites
T660 1490-1502 GO:0046983 denotes dimerization

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T42 968-975 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T43 1317-1325 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 37-40 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T39 82-85 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T60 43-44 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T61 135-136 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 263-269 http://purl.obolibrary.org/obo/CLO_0001869 denotes B). (B
T63 550-557 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T64 764-765 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T65 1195-1202 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T74 968-975 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T75 1317-1325 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T60 189-306 Sentence denotes Residues involved in dimerization are shown as sticks and highlighted in (B). (B) Interactions among MERS-CoV N-NTDs.
T61 307-504 Sentence denotes Dimerization is mediated mainly by vector-fusion residues interacting with the conserved hydrophobic regions on the core structure (first area) along with the residues surrounding it (second area).
T62 505-590 Sentence denotes Interacting residues on monomers 1 and 2 are labeled in black and blue, respectively.
T63 591-678 Sentence denotes Vector-fusion and conserved hydrophobic regions are colored cyan and red, respectively.
T64 679-767 Sentence denotes The color of all other interacting residues is the same as that for each monomer in (A).
T65 768-898 Sentence denotes Polar contacts are indicated with red dashed lines. (C) Upper panel: close-up of the interacting region of vector-fusion residues.
T66 899-984 Sentence denotes The surface was colored according to the hydrophobicity level at the protein surface.
T67 985-1072 Sentence denotes Vector-fusion residues (black) are shown as sticks to emphasize the hydrophobic pocket.
T68 1073-1085 Sentence denotes Lower panel:
T69 1086-1179 Sentence denotes 2D diagrams of the interaction between the hydrophobic pocket and the vector-fusion residues.
T70 1180-1212 Sentence denotes The latter are labeled in black.
T71 1213-1351 Sentence denotes The hydrophobic contacts are indicated with black dashed lines. (D) Sequence alignment of various CoV N proteins in the N-terminal region.
T72 1352-1401 Sentence denotes Red letters indicate strictly conserved residues.
T73 1402-1449 Sentence denotes Cyan indicates conservative substitution sites.
T74 1450-1536 Sentence denotes Hydrophobic regions involved in unusual dimerization are indicated by black triangles.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
131 103-119 Gene denotes monomers 1 and 2
132 529-545 Gene denotes monomers 1 and 2
133 26-34 Species denotes MERS-CoV Tax:1335626
134 71-79 Species denotes MERS-CoV Tax:1335626
135 1311-1314 Species denotes CoV Tax:11118
136 80-85 Chemical denotes N-NTD
137 295-305 Disease denotes CoV N-NTDs MESH:C000657245