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PMC:7094172 / 8571-10117 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T669 36-44 SP_9 denotes MERS-CoV
T668 81-89 SP_9 denotes MERS-CoV
T667 220-232 GO:0046983 denotes dimerization
T666 300-308 SP_9 denotes MERS-CoV
T665 317-329 GO:0051260 denotes Dimerization
T664 352-358 SO:0000440 denotes vector
T663 885-891 SO:0000440 denotes vector
T662 1166-1172 SO:0000440 denotes vector
T661 1440-1458 SO:0000366 denotes substitution sites
T660 1500-1512 GO:0046983 denotes dimerization

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T42 978-985 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T43 1327-1335 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 47-50 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T39 92-95 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T60 53-54 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T61 145-146 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 273-279 http://purl.obolibrary.org/obo/CLO_0001869 denotes B). (B
T63 560-567 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T64 774-775 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T65 1205-1212 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T74 978-985 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T75 1327-1335 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T59 0-198 Sentence denotes Figure 1 Structure and sequence of MERS-CoV N-NTD. (A) Overall structure of the MERS-CoV N-NTD dimer containing monomers 1 and 2 is depicted as a cartoon and colored yellow and green, respectively.
T60 199-316 Sentence denotes Residues involved in dimerization are shown as sticks and highlighted in (B). (B) Interactions among MERS-CoV N-NTDs.
T61 317-514 Sentence denotes Dimerization is mediated mainly by vector-fusion residues interacting with the conserved hydrophobic regions on the core structure (first area) along with the residues surrounding it (second area).
T62 515-600 Sentence denotes Interacting residues on monomers 1 and 2 are labeled in black and blue, respectively.
T63 601-688 Sentence denotes Vector-fusion and conserved hydrophobic regions are colored cyan and red, respectively.
T64 689-777 Sentence denotes The color of all other interacting residues is the same as that for each monomer in (A).
T65 778-908 Sentence denotes Polar contacts are indicated with red dashed lines. (C) Upper panel: close-up of the interacting region of vector-fusion residues.
T66 909-994 Sentence denotes The surface was colored according to the hydrophobicity level at the protein surface.
T67 995-1082 Sentence denotes Vector-fusion residues (black) are shown as sticks to emphasize the hydrophobic pocket.
T68 1083-1095 Sentence denotes Lower panel:
T69 1096-1189 Sentence denotes 2D diagrams of the interaction between the hydrophobic pocket and the vector-fusion residues.
T70 1190-1222 Sentence denotes The latter are labeled in black.
T71 1223-1361 Sentence denotes The hydrophobic contacts are indicated with black dashed lines. (D) Sequence alignment of various CoV N proteins in the N-terminal region.
T72 1362-1411 Sentence denotes Red letters indicate strictly conserved residues.
T73 1412-1459 Sentence denotes Cyan indicates conservative substitution sites.
T74 1460-1546 Sentence denotes Hydrophobic regions involved in unusual dimerization are indicated by black triangles.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
131 113-129 Gene denotes monomers 1 and 2
132 539-555 Gene denotes monomers 1 and 2
133 36-44 Species denotes MERS-CoV Tax:1335626
134 81-89 Species denotes MERS-CoV Tax:1335626
135 1321-1324 Species denotes CoV Tax:11118
136 90-95 Chemical denotes N-NTD
137 305-315 Disease denotes CoV N-NTDs MESH:C000657245