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PMC:7088323 / 6219-7778 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T10 66-71 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T11 324-328 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T12 912-917 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T13 1236-1240 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 1389-1405 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 324-328 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 1236-1240 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 1401-1405 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T10 1527-1531 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T38 264-272 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 813-821 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 857-872 Disease denotes pulmonary edema http://purl.obolibrary.org/obo/MONDO_0006932
T41 1204-1224 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T43 1215-1224 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T44 1241-1247 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T45 1282-1290 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 1440-1448 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T72 66-71 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T73 311-312 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 324-328 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T75 324-328 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T76 391-393 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T77 811-812 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 844-846 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T79 885-893 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T80 912-917 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T81 1204-1214 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T82 1236-1240 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T83 1236-1240 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T84 1261-1264 http://purl.obolibrary.org/obo/CLO_0001627 denotes a A
T85 1265-1267 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T86 1277-1281 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T87 1277-1281 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T88 1354-1355 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 1419-1420 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T90 1421-1422 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T91 1435-1439 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T92 1435-1439 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 1277-1281 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T8 1435-1439 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 857-872 Phenotype denotes pulmonary edema http://purl.obolibrary.org/obo/HP_0100598
T10 1215-1224 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1310-1315 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 1320-1328 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T13 1468-1473 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 894-903 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T44 0-246 Sentence denotes GGO were defined as hazy areas with slightly increased density in lungs without obscuration of bronchial and vascular margins, which may be caused by partial displacement of air due to partial filling of airspaces or interstitial thickening [26].
T45 247-405 Sentence denotes In patients with COVID-19, unilaterally or bilaterally GGO with a peripheral lung and subpleural distribution are commonly encountered [16, 19, 22] (Fig. 1a).
T46 406-609 Sentence denotes In the very first radiologic investigation of 21 patients by Chung et al [9], GGO was found in 57% patients and was believed to be the earliest radiographically visible CT manifestation in some patients.
T47 610-768 Sentence denotes These results are consistent with those of other subsequent studies, presenting GGO as the most common imaging finding with occurrence rate of up to 98% [23].
T48 769-992 Sentence denotes Recently, the first post-mortem biopsy in a COVID-19 patient was reported [27], showing pulmonary edema and hyaline membrane formation in both lungs, which we speculate may be the underlying pathological driver of GGO sign.
T49 993-1141 Sentence denotes Moreover, GGO are often accompanied by other features or patterns, including reticular and/or interlobular septal thickening and consolidation [19].
T50 1142-1253 Sentence denotes GGO together with small areas of consolidation may suggest an organizing pneumonia pattern of lung injury [28].
T51 1254-1339 Sentence denotes Fig. 1 a A 35-year-old male COVID-19 patient presenting fever and headache for 1 day.
T52 1340-1485 Sentence denotes CT scan shows a pure ground glass opacity in the right lower lobe (red frame). b A 47-year-old male COVID-19 patient presenting fever for 7 days.
T53 1486-1559 Sentence denotes CT scan shows consolidation in the right lobe subpleural area (red frame)

0_colil

Id Subject Object Predicate Lexical cue
32193638-18195376-54918 242-244 18195376 denotes 26
32193638-32027573-54919 387-389 32027573 denotes 19
32193638-32017661-54920 480-481 32017661 denotes 9
32193638-32027573-54921 1137-1139 32027573 denotes 19
32193638-32017662-54922 1249-1251 32017662 denotes 28

TEST0

Id Subject Object Predicate Lexical cue
32193638-233-239-54918 242-244 ["18195376"] denotes 26
32193638-140-146-54919 387-389 ["32027573"] denotes 19
32193638-74-79-54920 480-481 ["32017661"] denotes 9
32193638-144-150-54921 1137-1139 ["32027573"] denotes 19
32193638-107-113-54922 1249-1251 ["32017662"] denotes 28

MyTest

Id Subject Object Predicate Lexical cue
32193638-18195376-29362771 242-244 18195376 denotes 26
32193638-32027573-29362772 387-389 32027573 denotes 19
32193638-32017661-29362773 480-481 32017661 denotes 9
32193638-32027573-29362774 1137-1139 32027573 denotes 19
32193638-32017662-29362775 1249-1251 32017662 denotes 28

2_test

Id Subject Object Predicate Lexical cue
32193638-18195376-29362771 242-244 18195376 denotes 26
32193638-32027573-29362772 387-389 32027573 denotes 19
32193638-32017661-29362773 480-481 32017661 denotes 9
32193638-32027573-29362774 1137-1139 32027573 denotes 19
32193638-32017662-29362775 1249-1251 32017662 denotes 28

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
101 1291-1298 Species denotes patient Tax:9606
102 1449-1456 Species denotes patient Tax:9606
103 1282-1290 Disease denotes COVID-19 MESH:C000657245
104 1310-1315 Disease denotes fever MESH:D005334
105 1320-1328 Disease denotes headache MESH:D006261
106 1440-1448 Disease denotes COVID-19 MESH:C000657245
107 1468-1473 Disease denotes fever MESH:D005334
118 250-258 Species denotes patients Tax:9606
119 455-463 Species denotes patients Tax:9606
120 505-513 Species denotes patients Tax:9606
121 600-608 Species denotes patients Tax:9606
122 822-829 Species denotes patient Tax:9606
123 264-272 Disease denotes COVID-19 MESH:C000657245
124 813-821 Disease denotes COVID-19 MESH:C000657245
125 857-872 Disease denotes pulmonary edema MESH:D011654
126 1215-1224 Disease denotes pneumonia MESH:D011014
127 1236-1247 Disease denotes lung injury MESH:D055370