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PMC:7088323 / 3380-6196 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 81-85 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T7 288-293 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T8 800-814 Body_part denotes Bronchial wall http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 288-293 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 862-878 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T28 0-8 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 244-252 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 361-369 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 506-514 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 622-630 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 921-936 Disease denotes Lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T34 937-957 Disease denotes Pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T35 2012-2026 Disease denotes Bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T36 2608-2616 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 2618-2642 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T28 81-85 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T29 100-106 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T30 288-293 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T31 384-385 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 430-432 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T33 862-878 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T34 1038-1040 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T35 1083-1087 http://purl.obolibrary.org/obo/CLO_0001007 denotes 3/80
T36 1101-1104 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes Pan
T37 1203-1205 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T38 1231-1233 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T39 1236-1238 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T40 1331-1333 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T41 1366-1368 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T42 1382-1386 http://purl.obolibrary.org/obo/CLO_0001320 denotes 3/81
T43 1382-1386 http://purl.obolibrary.org/obo/CLO_0001321 denotes 3/81
T44 1413-1415 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T45 1523-1528 http://purl.obolibrary.org/obo/CLO_0001009 denotes 12/21
T46 1667-1669 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T47 1672-1674 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T48 1686-1688 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T49 1719-1723 http://purl.obolibrary.org/obo/CLO_0001310 denotes 3/51
T50 1729-1733 http://purl.obolibrary.org/obo/CLO_0001310 denotes 3/51
T51 1737-1740 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes Pan
T52 1774-1776 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T53 1846-1848 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T54 1905-1908 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T55 1911-1913 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T56 1916-1918 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T57 1919-1922 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T58 1930-1933 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T59 1935-1937 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T60 1943-1946 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T61 1958-1961 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T62 1973-1976 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T63 1988-1991 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T64 2003-2006 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T65 2033-2036 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T66 2155-2157 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T67 2169-2174 http://purl.obolibrary.org/obo/CLO_0001005 denotes 18/21
T68 2227-2229 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T69 2227-2229 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T70 2277-2279 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T71 2294-2296 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 35-46 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T4 2145-2147 Chemical denotes NG http://purl.obolibrary.org/obo/CHEBI_28787|http://purl.obolibrary.org/obo/CHEBI_73422
T6 2227-2229 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 826-842 Phenotype denotes Bronchiolectasis http://purl.obolibrary.org/obo/HP_0410397
T3 843-861 Phenotype denotes Pleural thickening http://purl.obolibrary.org/obo/HP_0031944
T4 862-878 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T5 902-920 Phenotype denotes Reversed halo sign http://purl.obolibrary.org/obo/HP_0032983
T6 921-936 Phenotype denotes Lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T7 937-957 Phenotype denotes Pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T8 2012-2026 Phenotype denotes Bronchiectasis http://purl.obolibrary.org/obo/HP_0002110

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-204 Sentence denotes SARS-CoV-2 was reported to utilize angiotensin-converting enzyme-2 (ACE2) as the cell receptor into humans [14], and firstly causing pulmonary interstitial damages and subsequent with parenchymal changes.
T22 205-275 Sentence denotes Table 1 shows the CT manifestations of COVID-19 in published articles.
T23 276-438 Sentence denotes Reportedly, chest CT images could manifest different imaging features or patterns in COVID-19 patients with a different time course and disease severity [18, 20].
T24 439-559 Sentence denotes Hereinafter, we will respectively describe each imaging feature of COVID-19 with RT-PCR confirmed cases at our hospital.
T25 560-652 Sentence denotes Table 1 The occurrence rate of different CT manifestations of COVID-19 in published articles
T26 653-964 Sentence denotes Author No. of patients CT scan GGO Consolidation GGO + consolidation Interlobular septal thickening Reticular pattern Crazy paving Air bronchogram Bronchial wall thickening Bronchiolectasis Pleural thickening Pleural effusion Subpleural line Nodule Reversed halo sign Lymphadenopathy Pericardial effusion Others
T27 965-1100 Sentence denotes Wu et al [15] 80 S 91% (73/80) 63% (50/80) - 59% (47/80) - 29% (23/80) - 11% (9/80) - - 6% (5/80) 20% (16/80) - - 4% (3/80) 5% (4/80) -
T28 1101-1209 Sentence denotes Pan et al [16] 63 S 86% (54/63) 19% (12/63) - - - - - - - - - - 13% (8/63) - - - Fibrous stripes 17% (11/63)
T29 1210-1319 Sentence denotes Yoon et al [17] 9* M 45% (35/77) 5% (2/40) 50% (20/40) - - 10% (4/40) 21% (16/77) - - - - - - 3% (1/37) - - -
T30 1320-1496 Sentence denotes Shi et al [18] 81 S 65% (53/81) 17% (14/81) - 35% (28/81) 4% (3/81) 10% (8/81) 47% (38/81) - 11% (9/81) 32% (26/81) 5% (4/81) - 6% (5/81) - 6% (5/81) - Cystic change 10% (8/81)
T31 1497-1597 Sentence denotes Chung et al [9] 21 S 57% (12/21) 29% (6/21) 29% (6/21) - 14% (3/21) 19% (4/21) - - - - - - - - - - -
T32 1598-1736 Sentence denotes Song et al [19] 51 S 76% (39/51) 55% (28/51) 59% (30/51) 75% (38/51) 22% (11/51) - 80% (41/51) - - - 8% (4/51) - - - 6% (3/51) 6% (3/51) -
T33 1737-1820 Sentence denotes Pan et al [20] 21 M 73% (60/82) 63% (52/82) - - - 23% (19/82) - - - - - - - - - - -
T34 1821-1884 Sentence denotes Fang et al [6] 51 S 72% (36/50) - - - - - - - - - - - - - - - -
T35 1885-2037 Sentence denotes Bernheim et al [12] 121 S 34% (41/121) 2% (2/121) 41% (50/121) - - 5% (6/121) - 12% (14/121) - - 1% (1/121) - - 2% (2/121) - - Bronchiectasis 1% (1/121)
T36 2038-2144 Sentence denotes Ai et al [21] 1014 S 46% (409/888) 50% (447/888) - 1% (8/888) 1% (8/888) - - - - - - - 3% (24/888) - - - -
T37 2145-2226 Sentence denotes NG et al [22] 21 S 86% (18/21) 62% (13/21) 19% (4/21) - - - - - - - - - - - - - -
T38 2227-2377 Sentence denotes Li et al [23] 83 S 98% (81/83) 64% (53/83) - 63% (52/83) 5% (4/83) 36% (30/83) 23% (19/83) - - 8% (7/83) 20% (17/83) 7% (6/83) - 8% (7/83) 5% (4/83) -
T39 2378-2442 Sentence denotes Chen et al [24] 99 S 14% (14/99) - - - - - - - - - - - - - - - -
T40 2443-2511 Sentence denotes Guan et al [25] 1099 S 56% (550/975) - - - - - - - - - - - - - - - -
T41 2512-2607 Sentence denotes *77 lesions in 9 patients were assessed (40 patchy to confluent lesions and 37 nodular lesions)
T42 2608-2816 Sentence denotes COVID-19, coronavirus disease 2019; No. of patients, number of patients; M, multiple, indicating multiple CT scans were assessed; S, single, indicating single CT scan was assessed; GGO, ground glass opacities

0_colil

Id Subject Object Predicate Lexical cue
32193638-32017661-54916 1510-1511 32017661 denotes 9
32193638-32027573-54917 1610-1612 32027573 denotes 19

TEST0

Id Subject Object Predicate Lexical cue
32193638-238-243-54916 1510-1511 ["32017661"] denotes 9
32193638-229-235-54917 1610-1612 ["32027573"] denotes 19

MyTest

Id Subject Object Predicate Lexical cue
32193638-32017661-29362769 1510-1511 32017661 denotes 9
32193638-32027573-29362770 1610-1612 32027573 denotes 19

2_test

Id Subject Object Predicate Lexical cue
32193638-32017661-29362769 1510-1511 32017661 denotes 9
32193638-32027573-29362770 1610-1612 32027573 denotes 19

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
63 667-675 Species denotes patients Tax:9606
64 862-878 Disease denotes Pleural effusion MESH:D010996
65 921-957 Disease denotes Lymphadenopathy Pericardial effusion MESH:D010490
67 622-630 Disease denotes COVID-19 MESH:C000657245
70 2529-2537 Species denotes patients Tax:9606
71 2591-2606 Disease denotes nodular lesions MESH:D020518
75 2651-2659 Species denotes patients Tax:9606
76 2671-2679 Species denotes patients Tax:9606
77 2618-2642 Disease denotes coronavirus disease 2019 MESH:C000657245
86 35-66 Gene denotes angiotensin-converting enzyme-2 Gene:59272
87 68-72 Gene denotes ACE2 Gene:59272
88 0-10 Species denotes SARS-CoV-2 Tax:2697049
89 100-106 Species denotes humans Tax:9606
90 370-378 Species denotes patients Tax:9606
91 244-252 Disease denotes COVID-19 MESH:C000657245
92 361-369 Disease denotes COVID-19 MESH:C000657245
93 506-514 Disease denotes COVID-19 MESH:C000657245