PMC:7088323 / 10682-11960
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T26 | 150-154 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T27 | 339-344 | Body_part | denotes | mucus | http://purl.org/sig/ont/fma/fma66938 |
| T28 | 375-379 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T29 | 380-388 | Body_part | denotes | bronchus | http://purl.org/sig/ont/fma/fma7409 |
| T30 | 482-487 | Body_part | denotes | mucus | http://purl.org/sig/ont/fma/fma66938 |
| T31 | 758-763 | Body_part | denotes | mucus | http://purl.org/sig/ont/fma/fma66938 |
| T32 | 790-801 | Body_part | denotes | bronchioles | http://purl.org/sig/ont/fma/fma76497 |
| T33 | 829-835 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T34 | 1214-1228 | Body_part | denotes | bronchial wall | http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480 |
| T36 | 1261-1278 | Body_part | denotes | right middle lobe | http://purl.org/sig/ont/fma/fma7383 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T17 | 89-96 | Body_part | denotes | bronchi | http://purl.obolibrary.org/obo/UBERON_0002185 |
| T18 | 150-154 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T19 | 339-344 | Body_part | denotes | mucus | http://purl.obolibrary.org/obo/UBERON_0000912 |
| T20 | 375-379 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T21 | 380-388 | Body_part | denotes | bronchus | http://purl.obolibrary.org/obo/UBERON_0002185 |
| T22 | 430-437 | Body_part | denotes | bronchi | http://purl.obolibrary.org/obo/UBERON_0002185 |
| T23 | 482-487 | Body_part | denotes | mucus | http://purl.obolibrary.org/obo/UBERON_0000912 |
| T24 | 758-763 | Body_part | denotes | mucus | http://purl.obolibrary.org/obo/UBERON_0000912 |
| T25 | 790-801 | Body_part | denotes | bronchioles | http://purl.obolibrary.org/obo/UBERON_0002186 |
| T26 | 829-835 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T27 | 961-965 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T28 | 1199-1203 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T29 | 1274-1278 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T59 | 211-219 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T60 | 305-313 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T61 | 683-691 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T62 | 874-882 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T63 | 1063-1071 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T118 | 47-48 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T119 | 100-101 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T120 | 150-154 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T121 | 150-154 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T122 | 262-263 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T123 | 375-379 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T124 | 375-379 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T125 | 380-388 | http://purl.obolibrary.org/obo/UBERON_0002185 | denotes | bronchus |
| T126 | 790-801 | http://purl.obolibrary.org/obo/UBERON_0002186 | denotes | bronchioles |
| T127 | 853-856 | http://purl.obolibrary.org/obo/CLO_0001627 | denotes | a A |
| T128 | 857-859 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T129 | 869-873 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T130 | 869-873 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T131 | 1042-1043 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T132 | 1044-1045 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T133 | 1058-1062 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T134 | 1058-1062 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T9 | 869-873 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T10 | 1058-1062 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T20 | 641-657 | Phenotype | denotes | bronchiolectasis | http://purl.obolibrary.org/obo/HP_0410397 |
| T21 | 670-679 | Phenotype | denotes | dry cough | http://purl.obolibrary.org/obo/HP_0031246 |
| T22 | 902-907 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T23 | 1091-1096 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T24 | 1102-1107 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T74 | 0-15 | Sentence | denotes | Air bronchogram |
| T75 | 16-239 | Sentence | denotes | Air bronchogram was defined as a pattern of air-filled (low-attenuation) bronchi on a background of opaque (high-attenuation) airless lung [26] and was reported to be another CT manifestation of COVID-19 [17, 19] (Fig. 3a). |
| T76 | 240-503 | Sentence | denotes | However, according to a recent general observation report of the COVID-19 autopsy [31], gelatinous mucus attachment was present in the lung bronchus; therefore, we infer the low-attenuation bronchi in CT imaging may be filled with gelatinous mucus instead of air. |
| T77 | 504-658 | Sentence | denotes | Moreover, this sign was often accompanied by slightly bronchiolar dilatation, and thus we think it may be more appropriate to term it as bronchiolectasis. |
| T78 | 659-845 | Sentence | denotes | As for the dry cough in COVID-19 patients, we surmise it may be explained by the high viscosity of mucus and the damage of dilated bronchioles, resulting in insufficient sputum motility. |
| T79 | 846-919 | Sentence | denotes | Fig. 3 a A 48-year-old male COVID-19 patient presenting fever for 5 days. |
| T80 | 920-1119 | Sentence | denotes | CT scan shows bilateral GGO in the lower lobe (red frames) and air bronchogram (white arrow) in the left subpleural area. b A 66-year-old male COVID-19 patient presenting fever with cough for 7 days. |
| T81 | 1120-1278 | Sentence | denotes | CT scan shows reticular pattern in the subpleural areas of the bilateral lower lobe, GGO, and bronchial wall thickening (white arrow) in the right middle lobe |
0_colil
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32193638-18195376-54930 | 156-158 | 18195376 | denotes | 26 |
| 32193638-32027573-54931 | 225-227 | 32027573 | denotes | 19 |
TEST0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32193638-140-146-54930 | 156-158 | ["18195376"] | denotes | 26 |
| 32193638-209-215-54931 | 225-227 | ["32027573"] | denotes | 19 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32193638-18195376-29362783 | 156-158 | 18195376 | denotes | 26 |
| 32193638-32027573-29362784 | 225-227 | 32027573 | denotes | 19 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32193638-18195376-29362783 | 156-158 | 18195376 | denotes | 26 |
| 32193638-32027573-29362784 | 225-227 | 32027573 | denotes | 19 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 179 | 883-890 | Species | denotes | patient | Tax:9606 |
| 180 | 1072-1079 | Species | denotes | patient | Tax:9606 |
| 181 | 874-882 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 182 | 902-907 | Disease | denotes | fever | MESH:D005334 |
| 183 | 1063-1071 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 184 | 1091-1096 | Disease | denotes | fever | MESH:D005334 |
| 185 | 1102-1107 | Disease | denotes | cough | MESH:D003371 |
| 191 | 692-700 | Species | denotes | patients | Tax:9606 |
| 192 | 211-219 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 193 | 305-313 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 194 | 670-679 | Disease | denotes | dry cough | MESH:D003371 |
| 195 | 683-691 | Disease | denotes | COVID-19 | MESH:C000657245 |