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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 0-22 Species denotes 2019 Novel Coronavirus Tax:2697049
4 24-32 Disease denotes COVID-19 MESH:C000657245
5 34-43 Disease denotes Pneumonia MESH:D011014
18 180-202 Species denotes 2019 novel Coronavirus Tax:2697049
19 204-213 Species denotes 2019-nCoV Tax:2697049
20 312-319 Species denotes patient Tax:9606
21 105-130 Disease denotes 2019, Coronavirus disease MESH:C000657245
22 131-156 Disease denotes 2019 (COVID-19) pneumonia MESH:C000657245
23 325-343 Disease denotes COVID-19 pneumonia MESH:C000657245
24 379-384 Disease denotes fever MESH:D005334
25 386-401 Disease denotes chest tightness MESH:D002637
26 407-414 Disease denotes fatigue MESH:D005221
27 439-447 Disease denotes COVID-19 MESH:C000657245
28 448-457 Disease denotes infection MESH:D007239
29 702-717 Disease denotes fibrous lesions MESH:D002636
39 893-910 Species denotes novel coronavirus Tax:2697049
40 1149-1157 Species denotes patients Tax:9606
41 1299-1305 Species denotes People Tax:9606
42 763-772 Disease denotes pneumonia MESH:D011014
43 912-936 Disease denotes Coronavirus disease 2019 MESH:C000657245
44 938-946 Disease denotes COVID-19 MESH:C000657245
45 1037-1041 Disease denotes died MESH:D003643
46 1130-1148 Disease denotes COVID-19 pneumonia MESH:C000657245
47 1193-1211 Disease denotes COVID-19 pneumonia MESH:C000657245
55 1511-1518 Species denotes patient Tax:9606
56 1642-1650 Species denotes patients Tax:9606
57 1396-1401 Disease denotes fever MESH:D005334
58 1425-1440 Disease denotes chest tightness MESH:D002637
59 1446-1453 Disease denotes fatigue MESH:D005221
60 1656-1664 Disease denotes COVID-19 MESH:C000657245
61 1665-1674 Disease denotes infection MESH:D007239
64 1887-1894 Chemical denotes glucose MESH:D005947
65 1965-1970 Disease denotes fever MESH:D005334
73 2821-2839 Gene denotes C-reactive protein Gene:1401
74 2243-2250 Species denotes patient Tax:9606
75 2857-2876 Chemical denotes influenza A antigen
76 2314-2319 Disease denotes fever MESH:D005334
77 2337-2345 Disease denotes coughing MESH:D003371
78 2933-2941 Disease denotes COVID-19 MESH:C000657245
79 2942-2951 Disease denotes infection MESH:D007239
89 3080-3087 Species denotes patient Tax:9606
90 3301-3308 Species denotes patient Tax:9606
91 3406-3413 Species denotes patient Tax:9606
92 3134-3143 Chemical denotes lopinavir MESH:D061466
93 3213-3220 Chemical denotes tabaxin
94 3222-3234 Chemical denotes piperacillin MESH:D010878
95 3237-3247 Chemical denotes tazobactam MESH:D000078142
96 3566-3581 Disease denotes fibrous lesions MESH:D002636
97 3621-3630 Disease denotes pneumonia MESH:D011014
114 3873-3881 Species denotes patients Tax:9606
115 3892-3903 Species denotes coronavirus Tax:11118
116 4415-4423 Species denotes patients Tax:9606
117 4644-4651 Species denotes patient Tax:9606
118 3724-3733 Disease denotes pneumonia MESH:D011014
119 3775-3783 Disease denotes COVID-19 MESH:C000657245
120 3944-3952 Disease denotes COVID-19 MESH:C000657245
121 4156-4165 Disease denotes infection MESH:D007239
122 4218-4227 Disease denotes infection MESH:D007239
123 4276-4285 Disease denotes infection MESH:D007239
124 4497-4502 Disease denotes fever MESH:D005334
125 4504-4511 Disease denotes fatigue MESH:D005221
126 4517-4526 Disease denotes dry cough MESH:D003371
127 4541-4548 Disease denotes dyspnea MESH:D004417
128 4567-4602 Disease denotes acute respiratory distress syndrome MESH:D012128
129 4796-4805 Disease denotes pneumonia MESH:D011014
136 5127-5135 Species denotes patients Tax:9606
137 5210-5217 Species denotes patient Tax:9606
138 4919-4934 Disease denotes pulmonary edema MESH:D011654
139 5149-5157 Disease denotes COVID-19 MESH:C000657245
140 5400-5415 Disease denotes alveolar injury MESH:D000080902
141 5565-5573 Disease denotes fibrosis MESH:D005355
147 5635-5642 Species denotes patient Tax:9606
148 5648-5656 Disease denotes COVID-19 MESH:C000657245
149 5868-5876 Disease denotes fibrosis MESH:D005355
150 5982-5990 Disease denotes COVID-19 MESH:C000657245
151 6010-6025 Disease denotes viral pneumonia
174 6226-6233 Species denotes patient Tax:9606
175 6239-6273 Disease denotes Coronavirus disease 2019 pneumonia MESH:C000657245
182 7225-7232 Species denotes patient Tax:9606
183 6398-6403 Disease denotes fever MESH:D005334
184 6436-6458 Disease denotes thoracic abnormalities MESH:D013896
185 6608-6613 Disease denotes fever MESH:D005334
186 7077-7092 Disease denotes fibrous lesions MESH:D002636
187 7132-7141 Disease denotes pneumonia MESH:D011014

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1887-1894 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T2 2867-2876 https://glytoucan.org/Structures/Glycans/G71832QJ denotes A antigen

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 386-391 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T2 621-626 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T3 1087-1092 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T4 1425-1430 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T5 1694-1698 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T6 1772-1781 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T7 1793-1804 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T8 1818-1829 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T9 1887-1894 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T10 1928-1933 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T11 1997-2002 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T12 2042-2047 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T13 2118-2134 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T14 2154-2163 Body_part denotes left lung http://purl.org/sig/ont/fma/fma7310
T15 2359-2364 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T16 2413-2429 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T17 2711-2720 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T18 2735-2746 Body_part denotes eosinophils http://purl.org/sig/ont/fma/fma62861
T19 2762-2773 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T20 2786-2797 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T21 2832-2839 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T22 3050-3053 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T23 3061-3067 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T24 3152-3159 Body_part denotes capsule http://purl.org/sig/ont/fma/fma85272
T25 3163-3171 Body_part denotes capsules http://purl.org/sig/ont/fma/fma85272
T26 3525-3530 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T27 3797-3803 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T28 4721-4731 Body_part denotes leukocytes http://purl.org/sig/ont/fma/fma62852
T29 4736-4747 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T30 4864-4880 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T31 5313-5318 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T32 5349-5353 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T33 5400-5408 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T34 5658-5663 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T35 5741-5746 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T36 6305-6310 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T37 6326-6331 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T38 6406-6411 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T39 6511-6527 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T40 6529-6538 Body_part denotes Left lung http://purl.org/sig/ont/fma/fma7310
T41 6565-6570 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T42 6648-6664 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T43 7036-7041 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 386-391 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1087-1092 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T3 1425-1430 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 1928-1933 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T5 2042-2047 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 2130-2134 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T7 2154-2163 Body_part denotes left lung http://purl.obolibrary.org/obo/UBERON_0002168
T8 2159-2163 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 2359-2364 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T10 2425-2429 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T11 3061-3067 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T12 3152-3159 Body_part denotes capsule http://purl.obolibrary.org/obo/UBERON_0003893
T13 4876-4880 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T14 5349-5353 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 5658-5663 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T16 6305-6310 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T17 6326-6331 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T18 6406-6411 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T19 6523-6527 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T20 6529-6538 Body_part denotes Left lung http://purl.obolibrary.org/obo/UBERON_0002168
T21 6534-6538 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T22 6565-6570 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 6660-6664 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 24-32 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 34-43 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 111-135 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 137-145 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 147-156 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 325-333 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 334-343 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 439-447 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 448-457 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 763-772 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 912-936 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T12 938-946 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 1130-1138 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 1139-1148 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 1193-1201 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 1202-1211 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T17 1656-1664 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 1665-1674 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T19 2857-2866 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T20 2933-2941 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 2942-2951 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 3610-3630 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T24 3621-3630 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T25 3724-3733 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T26 3775-3783 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 3944-3952 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 4156-4165 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T29 4218-4227 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 4276-4285 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 4567-4602 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T32 4573-4602 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T33 4796-4805 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T34 4919-4934 Disease denotes pulmonary edema http://purl.obolibrary.org/obo/MONDO_0006932
T35 5149-5157 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 5409-5415 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T37 5648-5656 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 5982-5990 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 6010-6025 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T40 6016-6025 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T41 6239-6263 Disease denotes Coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T42 6264-6273 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T43 6608-6618 Disease denotes fever show http://purl.obolibrary.org/obo/MONDO_0025412
T44 7121-7141 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T46 7132-7141 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 291-292 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 305-311 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T3 386-391 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T4 621-626 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T5 883-884 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 951-956 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 986-987 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1087-1092 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T9 1173-1174 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1215-1216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1229-1235 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T12 1358-1359 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T13 1372-1378 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T14 1394-1395 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 1425-1430 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T16 1928-1933 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T17 1997-2002 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T18 2042-2047 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T19 2154-2163 http://purl.obolibrary.org/obo/UBERON_0002168 denotes left lung
T20 2347-2348 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T21 2359-2364 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T22 2867-2868 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T23 3059-3060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 3189-3190 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 3368-3369 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3456-3457 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 3525-3530 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T28 3560-3561 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 3610-3620 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T30 3773-3774 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 3829-3836 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T32 3969-3981 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T33 4018-4019 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 4113-4114 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 4252-4256 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T36 4946-4954 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T37 5313-5318 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T38 5349-5353 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T39 5349-5353 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T40 5626-5627 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 5628-5634 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T42 5658-5663 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T43 5741-5746 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T44 5836-5837 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 6051-6056 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T46 6219-6225 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T47 6275-6276 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 6278-6279 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 6305-6310 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T50 6326-6331 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T51 6406-6411 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T52 6424-6425 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T53 6475-6476 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T54 6529-6538 http://purl.obolibrary.org/obo/UBERON_0002168 denotes Left lung
T55 6565-6570 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T56 7036-7041 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T57 7071-7072 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 7121-7131 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1887-1894 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T3 2190-2201 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T4 2832-2839 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T5 2867-2876 Chemical denotes A antigen http://purl.obolibrary.org/obo/CHEBI_139352
T6 2869-2876 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T7 3050-3053 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T8 3118-3132 Chemical denotes antiviral drug http://purl.obolibrary.org/obo/CHEBI_36044
T9 3118-3127 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T10 3128-3132 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T11 3134-3143 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T12 3200-3211 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T13 3222-3234 Chemical denotes piperacillin http://purl.obolibrary.org/obo/CHEBI_8232
T14 3237-3247 Chemical denotes tazobactam http://purl.obolibrary.org/obo/CHEBI_9421
T15 6038-6050 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T16 6046-6050 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 489-502 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 489-502 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T3 2973-2986 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T4 2973-2986 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T5 4955-4964 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T6 7168-7181 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T7 7168-7181 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-44 Sentence denotes 2019 Novel Coronavirus (COVID-19) Pneumonia:
T2 45-80 Sentence denotes Serial Computed Tomography Findings
T3 82-90 Sentence denotes Abstract
T4 91-242 Sentence denotes From December 2019, Coronavirus disease 2019 (COVID-19) pneumonia (formerly known as the 2019 novel Coronavirus [2019-nCoV]) broke out in Wuhan, China.
T5 243-415 Sentence denotes In this study, we present serial CT findings in a 40-year-old female patient with COVID-19 pneumonia who presented with the symptoms of fever, chest tightness, and fatigue.
T6 416-529 Sentence denotes She was diagnosed with COVID-19 infection confirmed by real-time reverse-transcriptase-polymerase chain reaction.
T7 530-627 Sentence denotes CT showed rapidly progressing peripheral consolidations and ground-glass opacities in both lungs.
T8 628-718 Sentence denotes After treatment, the lesions were shown to be almost absorbed leaving the fibrous lesions.
T9 720-732 Sentence denotes INTRODUCTION
T10 733-841 Sentence denotes Since December 2019, cases of pneumonia with unknown causes have emerged in succession in Wuhan, China (12).
T11 842-964 Sentence denotes On January 7, 2020, it was identified as a type of novel coronavirus (Coronavirus disease 2019, COVID-19) by virus typing.
T12 965-1046 Sentence denotes By January 30, 2020, a total of 7700 cases were confirmed and 170 cases died (3).
T13 1047-1162 Sentence denotes To date, there have been few reports of chest Computed tomography (CT) findings of COVID-19 pneumonia patients (4).
T14 1163-1236 Sentence denotes We report a confirmed case of COVID-19 pneumonia in a 40-year-old female.
T15 1237-1344 Sentence denotes Written informed consent was waived by the Jiangxi Provincial People's Hospital Institutional Review Board.
T16 1346-1357 Sentence denotes CASE REPORT
T17 1358-1506 Sentence denotes A 40-year-old female presented with a fever for 3-days, as well as chest tightness, and fatigue for 2-days was admitted to our emergency department.
T18 1507-1580 Sentence denotes The patient was physically healthy before and had no underlying diseases.
T19 1581-1675 Sentence denotes She did not travel to Wuhan city and denied any contact with patients with COVID-19 infection.
T20 1676-1733 Sentence denotes At admission, her body temperature was elevated to 38.9℃.
T21 1734-1838 Sentence denotes Laboratory examinations showed normal leukocyte (4170/µL), neutrophils (59.6%), and lymphocytes (30.9%).
T22 1839-1915 Sentence denotes There was an increase in hematocrit (0.456) and glucose (7.3 mmol/L) levels.
T23 1916-2013 Sentence denotes The initial chest radiograph, taken 3-days after fever onset, was normal in both lungs (Fig. 1A).
T24 2014-2175 Sentence denotes On the same day, unenhanced chest CT showed ground-glass opacities (GGOs) in the subpleural area of the right lower lobe (Fig. 1B), and the left lung was normal.
T25 2176-2228 Sentence denotes She was given antibiotics for symptomatic treatment.
T26 2229-2346 Sentence denotes At first, the patient did not show any respiratory symptoms, however, on day 6 after fever onset, she began coughing.
T27 2347-2501 Sentence denotes A follow-up chest CT revealed an increased density of GGOs in the right lower lobe, which then progressed into consolidations with perilobular thickening.
T28 2502-2670 Sentence denotes Moreover, multifocal peripheral patchy areas of nodular consolidations and GGO lesions were newly developed in the subpleural areas of the both lower lobes (Fig. 1C–E).
T29 2671-2852 Sentence denotes Laboratory examination showed decreased leukocyte (3390/µL) and eosinophils (0.0%); normal neutrophils (67.4%) and lymphocytes (23.7%); and increased C-reactive protein (8.00 mg/L).
T30 2853-2900 Sentence denotes The influenza A antigen screening was negative.
T31 2901-3075 Sentence denotes Finally, she was diagnosed with COVID-19 infection by real-time reverse-transcriptase-polymerase chain reaction (rRT-PCR) amplification of the viral DNA from a sputum sample.
T32 3076-3144 Sentence denotes The patient was isolated and treated with antiviral drug (lopinavir:
T33 3145-3250 Sentence denotes 200 mg/capsule, 2 capsules each time, twice a day) and antibiotics (tabaxin [piperacillin + tazobactam]).
T34 3251-3356 Sentence denotes After 6 days of treatment, the temperature of the patient dropped to normal and the symptoms disappeared.
T35 3357-3429 Sentence denotes On day 12, a repeat rRT-PCR was negative and the patient was discharged.
T36 3430-3641 Sentence denotes At the time of discharge, a repeat CT showed that the previous consolidations and GGOs in both lungs were almost absorbed leaving a few fibrous lesions that may represent residual organizing pneumonia (Fig. 1F).
T37 3643-3653 Sentence denotes DISCUSSION
T38 3654-3886 Sentence denotes Since December 2019, some hospitals in Wuhan have been suffering from pneumonia of unknown causes, later identified as a COVID-19 by the whole genome sequence analysis of the viruses in the respiratory samples from the patients (5).
T39 3887-3987 Sentence denotes This coronavirus belongs to the β genus, which was named COVID-19 by World Health Organization (67).
T40 3988-4141 Sentence denotes Most of the initial cases had a history of exposure to the South China Seafood Market in Wuhan city, and some cases rendered a family clustering feature.
T41 4142-4271 Sentence denotes The source of infection is still unknown, however it is speculated that the infection may have been caused by bats or vipers (8).
T42 4272-4337 Sentence denotes The infection is mainly transmitted through respiratory droplets.
T43 4338-4457 Sentence denotes The median time from onset to admission to the hospital was 9 days, and most patients were between 40 and 60 years-old.
T44 4458-4625 Sentence denotes The clinical manifestations are mainly fever, fatigue, and dry cough, with gradual dyspnea in some cases and acute respiratory distress syndrome in severe cases (239).
T45 4626-4815 Sentence denotes In this case, the patient had no clear history of contact with the epidemic area, and both the leukocytes and lymphocytes were normal, thus it was misdiagnosed as common pneumonia at first.
T46 4816-4969 Sentence denotes In this case, the initial CT showed GGOs in the right lower lobe, the pathology of which may represent pulmonary edema or hyaline membrane formation (4).
T47 4970-5069 Sentence denotes The density of the lesions is so subtle that it can hardly be depicted by conventional radiographs.
T48 5070-5189 Sentence denotes Therefore, routine CT examination is recommended for the patients suspected of COVID-19 to reduce missed diagnosis (1).
T49 5190-5448 Sentence denotes CT findings of this patient include the short-term progression of lesions, multiple patchy consolidations and GGOs in both lungs, especially in the peripheral lung zones of the lower lobes, which may represent alveolar injury, cellular and fibrous exudation.
T50 5449-5574 Sentence denotes After treatment, the consolidations and GGOs were almost absorbed, leaving fibrous cord-like shadows that represent fibrosis.
T51 5575-5657 Sentence denotes In conclusion, we report the serial CT findings in a female patient with COVID-19.
T52 5658-5802 Sentence denotes Chest CT showed rapidly developing multiple patchy consolidations and GGOs in both lungs, which were mainly distributed in the peripheral areas.
T53 5803-5877 Sentence denotes In the later stage, there may be a possibility of development of fibrosis.
T54 5878-5957 Sentence denotes And with high-resolution CT, it will be easier to find GGOs in the early stage.
T55 5958-6108 Sentence denotes The imaging findings of COVID-19 overlap with other viral pneumonia, therefore, nucleic acid tests are recommended for prompt diagnosis and treatment.
T56 6110-6132 Sentence denotes Conflicts of Interest:
T57 6133-6197 Sentence denotes The authors have no potential conflicts of interest to disclose.
T58 6199-6274 Sentence denotes Fig. 1 40-year-old female patient with Coronavirus disease 2019 pneumonia.
T59 6275-6280 Sentence denotes A, B.
T60 6281-6405 Sentence denotes Initial posteroanterior chest radiograph and chest CT scan were performed on day of admission (3 days after onset of fever).
T61 6406-6459 Sentence denotes Chest radiograph (A) shows no thoracic abnormalities.
T62 6460-6528 Sentence denotes Axial CT scan (B) shows GGOs in subpleural area of right lower lobe.
T63 6529-6549 Sentence denotes Left lung is normal.
T64 6550-6554 Sentence denotes C–E.
T65 6555-6736 Sentence denotes Follow-up chest CT scans taken 6 days after onset of fever show increased density of GGOs in right lower lobe, which then progressed into consolidations with perilobular thickening.
T66 6737-6882 Sentence denotes Multifocal peripheral patchy areas of nodular consolidations and nodular GGO lesions are newly developed in subpleural areas of both lower lobes.
T67 6883-6885 Sentence denotes F.
T68 6886-6996 Sentence denotes Progressive resolution of parenchymal lesions is seen in follow-up high-resolution CT scan obtained on day 12.
T69 6997-7142 Sentence denotes Patchy consolidations and GGOs in both lungs were almost absorbed leaving a few fibrous lesions that may represent residual organizing pneumonia.
T70 7143-7248 Sentence denotes Repeat real-time reverse-transcriptase-polymerase chain reaction was negative and patient was discharged.
T71 7249-7301 Sentence denotes CT = computer tomography, GGO = ground-glass opacity

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 34-43 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 147-156 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 334-343 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 379-384 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 386-401 Phenotype denotes chest tightness http://purl.obolibrary.org/obo/HP_0031352
T6 407-414 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T7 763-772 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 1139-1148 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T9 1202-1211 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 1396-1401 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 1425-1440 Phenotype denotes chest tightness http://purl.obolibrary.org/obo/HP_0031352
T12 1446-1453 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T13 1852-1874 Phenotype denotes increase in hematocrit http://purl.obolibrary.org/obo/HP_0001899
T14 1965-1970 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T15 2314-2319 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T16 2337-2345 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T17 3621-3630 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 3724-3733 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T19 4497-4502 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T20 4504-4511 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T21 4517-4526 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T22 4541-4548 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T23 4573-4593 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T24 4796-4805 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T25 4919-4934 Phenotype denotes pulmonary edema http://purl.obolibrary.org/obo/HP_0100598
T26 6016-6025 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T27 6264-6273 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T28 6398-6403 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T29 6608-6613 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T30 7132-7141 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32100486-31986259-66090451 837-839 31986259 denotes 12
32100486-32004066-66090452 1043-1044 32004066 denotes 3
32100486-31991541-66090453 4268-4269 31991541 denotes 8
32100486-31986259-66090454 4620-4621 31986259 denotes 2
32100486-32004066-66090455 4620-4622 32004066 denotes 23
32100486-32056397-66090456 4620-4623 32056397 denotes 239