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PMC:7081066 / 5986-7093 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
170 25-30 Gene denotes spike Gene:43740568
171 43-52 Species denotes SARS-CoVs Tax:694009
193 103-108 Gene denotes spike Gene:43740568
194 718-723 Gene denotes spike Gene:43740568
195 517-522 Gene denotes spike Gene:43740568
196 130-140 Species denotes SARS-CoV-2 Tax:2697049
197 149-153 Species denotes CoVs Tax:11118
198 155-163 Species denotes SARS-CoV Tax:694009
199 277-287 Species denotes SARS-CoV-2 Tax:2697049
200 299-302 Species denotes CoV Tax:11118
201 366-374 Species denotes SARS-CoV Tax:694009
202 390-393 Species denotes CoV Tax:11118
203 397-416 Species denotes Rhinolophus affinis Tax:59477
204 535-538 Species denotes CoV Tax:11118
205 546-556 Species denotes SARS-CoV-2 Tax:2697049
206 734-742 Species denotes SARS-CoV Tax:694009
207 751-754 Species denotes CoV Tax:11118
208 760-779 Species denotes Rhinolophus sinicus Tax:89399
209 838-848 Species denotes SARS-CoV-2 Tax:2697049
210 928-938 Species denotes SARS-CoV-2 Tax:2697049
211 955-958 Species denotes CoV Tax:11118
212 964-983 Species denotes Rhinolophus affinis Tax:59477
213 1033-1038 Species denotes CoV-2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T35 31-39 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T36 109-116 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T37 724-732 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T38 866-876 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T39 1063-1073 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 43-47 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 130-138 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 155-163 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 277-285 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 366-374 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 546-554 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 734-742 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 838-846 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 928-936 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T34 293-294 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 451-456 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T36 476-478 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T37 526-534 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes this Bat
T38 639-641 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T39 792-800 http://purl.obolibrary.org/obo/SO_0000418 denotes signaled
T40 829-834 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T41 1029-1032 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAS

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T41 31-39 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T42 109-116 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T43 724-732 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T44 866-876 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T45 866-871 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T46 872-876 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T47 1063-1073 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T48 1063-1068 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T49 1069-1073 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T53 0-73 Sentence denotes Homology analysis of the spike proteins of SARS-CoVs and related Bat-CoVs
T54 74-193 Sentence denotes Phylogenetic analysis of the spike protein sequences of SARS-CoV-2 and Bat-CoVs, SARS-CoV is shown in Figure 1(Fig. 1).
T55 194-481 Sentence denotes The results are in agreement with recent reports of an independent introduction of SARS-CoV-2 from a Bat-CoV, different from the spillover which led to the introduction of SARS-CoV, being the Bat-CoV of Rhinolophus affinis the probable ancestor of this new virus (Wong et al., 2020[18]).
T56 482-598 Sentence denotes Indeed, the sequences of the whole spike of this Bat-CoV and of SARS-CoV-2 share 97.7 % identity (Figure 1(Fig. 1)).
T57 599-733 Sentence denotes More divergence is found however in the S1 subunit, particularly in the Receptor Binding Domain (RBD) of the different spike proteins.
T58 734-939 Sentence denotes SARS-CoV and Bat-CoV from Rhinolophus sinicus (originally signaled as the most closely related virus to SARS-CoV-2) exhibit several amino acid substitutions and deletions in the RBD compared to SARS-CoV-2.
T59 940-1107 Sentence denotes The RBD of Bat-CoV from Rhinolophus affinis, although more closely related to the one of SAS-CoV-2, also displayed several amino acid substitutions (Figure 2(Fig. 2)).