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PMC:7081066 / 5161-5975 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
159 57-61 Gene denotes ACE2 Gene:59272
160 333-337 Gene denotes ACE2 Gene:59272
161 472-477 Gene denotes spike Gene:43740568
162 501-505 Gene denotes ACE2 Gene:59272
163 323-328 Gene denotes spike Gene:43740568
164 162-167 Gene denotes spike Gene:43740568
165 31-36 Gene denotes spike Gene:43740568
166 22-30 Species denotes SARS-CoV Tax:694009
167 151-161 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T32 103-110 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T33 181-188 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 478-485 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T24 22-30 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 151-159 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T32 440-441 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 564-566 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T37 103-110 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T38 181-188 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T39 464-470 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T40 478-485 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T45 0-121 Sentence denotes Crystal structure for SARS-CoV spike (PDB code 6ACK) and ACE2 (PDB code 1R42) were downloaded from the Protein Data Bank.
T46 122-180 Sentence denotes Also, the homology model for SARS-CoV-2 spike was assayed.
T47 181-236 Sentence denotes Protein preparation was carried out as described above.
T48 237-386 Sentence denotes Then, binding patterns and affinity estimations for the interaction between the viral spike and ACE2 receptor were performed using molecular docking.
T49 387-569 Sentence denotes This process was performed through two steps; first, a blind docking between ligand (spike protein) and receptor (ACE2) was performed using Z-dock software (Pierce et al., 2014[11]).
T50 570-693 Sentence denotes Then, the resulting docking data were processed and analyzed by using the tools of PRODIGY software (Xue et al., 2016[19]).
T51 694-814 Sentence denotes Finally, results were clustered and analyzed considering binding energies and main interacting residues in each complex.

MyTest

Id Subject Object Predicate Lexical cue
32210742-24532726-29811233 564-566 24532726 denotes 11
32210742-27503228-29811234 688-690 27503228 denotes 19

2_test

Id Subject Object Predicate Lexical cue
32210742-24532726-29811233 564-566 24532726 denotes 11
32210742-27503228-29811234 688-690 27503228 denotes 19