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PMC:7081066 / 5137-5975 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
159 81-85 Gene denotes ACE2 Gene:59272
160 357-361 Gene denotes ACE2 Gene:59272
161 496-501 Gene denotes spike Gene:43740568
162 525-529 Gene denotes ACE2 Gene:59272
163 347-352 Gene denotes spike Gene:43740568
164 186-191 Gene denotes spike Gene:43740568
165 55-60 Gene denotes spike Gene:43740568
166 46-54 Species denotes SARS-CoV Tax:694009
167 175-185 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T30 0-7 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T31 8-15 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T32 127-134 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T33 205-212 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 502-509 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T24 46-54 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 175-183 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T32 464-465 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 588-590 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T35 0-7 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T36 8-15 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T37 127-134 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T38 205-212 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T39 488-494 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T40 502-509 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T44 0-23 Sentence denotes Protein-protein docking
T45 24-145 Sentence denotes Crystal structure for SARS-CoV spike (PDB code 6ACK) and ACE2 (PDB code 1R42) were downloaded from the Protein Data Bank.
T46 146-204 Sentence denotes Also, the homology model for SARS-CoV-2 spike was assayed.
T47 205-260 Sentence denotes Protein preparation was carried out as described above.
T48 261-410 Sentence denotes Then, binding patterns and affinity estimations for the interaction between the viral spike and ACE2 receptor were performed using molecular docking.
T49 411-593 Sentence denotes This process was performed through two steps; first, a blind docking between ligand (spike protein) and receptor (ACE2) was performed using Z-dock software (Pierce et al., 2014[11]).
T50 594-717 Sentence denotes Then, the resulting docking data were processed and analyzed by using the tools of PRODIGY software (Xue et al., 2016[19]).
T51 718-838 Sentence denotes Finally, results were clustered and analyzed considering binding energies and main interacting residues in each complex.

MyTest

Id Subject Object Predicate Lexical cue
32210742-24532726-29811233 588-590 24532726 denotes 11
32210742-27503228-29811234 712-714 27503228 denotes 19

2_test

Id Subject Object Predicate Lexical cue
32210742-24532726-29811233 588-590 24532726 denotes 11
32210742-27503228-29811234 712-714 27503228 denotes 19