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PMC:7080117 / 9290-10281 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
227 700-718 Gene denotes C-reactive protein Gene:1401
228 720-724 Gene denotes mg/L Gene:11343
229 0-8 Species denotes Patients Tax:9606
230 18-25 Species denotes Patient Tax:9606
231 80-83 Species denotes Men Tax:9606
232 95-100 Species denotes Women Tax:9606
233 159-166 Species denotes patient Tax:9606
234 933-943 Species denotes SARS-CoV-2 Tax:2697049
235 150-158 Disease denotes infected MESH:D007239
236 239-251 Disease denotes Hypertension MESH:D006973
237 263-271 Disease denotes Diabetes MESH:D003920
238 281-303 Disease denotes Cardiovascular disease MESH:D002318
239 313-350 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
240 360-372 Disease denotes Tuberculosis MESH:D014376
241 428-444 Disease denotes symptoms   Fever MESH:D051271
242 456-461 Disease denotes Cough MESH:D003371
243 502-521 Disease denotes Fatigue weakness 19 MESH:C000657245
244 530-537 Disease denotes Myalgia MESH:D063806
245 588-596 Disease denotes Headache MESH:D006261
246 606-614 Disease denotes Diarrhea MESH:D003967
247 624-630 Disease denotes Nausea MESH:D009325

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T34 473-479 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T35 554-560 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T36 711-718 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T37 811-821 Body_part denotes Leucocytes http://purl.org/sig/ont/fma/fma62852

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T35 473-479 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T36 554-560 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T37 640-645 Body_part denotes Vomit http://purl.obolibrary.org/obo/UBERON_0000172

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T49 239-251 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T50 263-271 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T51 281-303 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T52 313-350 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T53 333-350 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T54 360-372 Disease denotes Tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T55 549-560 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T56 606-614 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T57 933-941 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T82 71-73 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T83 228-230 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T84 491-493 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T85 693-697 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T86 800-802 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T87 811-821 http://purl.obolibrary.org/obo/CL_0000738 denotes Leucocytes
T88 958-962 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T6 711-718 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 945-957 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T8 953-957 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T74 0-17 Sentence denotes Patients (n = 90)
T75 18-38 Sentence denotes Patient demographics
T76 39-77 Sentence denotes   Median age, years (range) 50 (18–86)
T77 78-92 Sentence denotes   Men 39 (43%)
T78 93-109 Sentence denotes   Women 51 (57%)
T79 110-126 Sentence denotes Exposure history
T80 127-175 Sentence denotes   Exposure to Wuhan or infected patient 86 (96%)
T81 176-201 Sentence denotes   Unknown exposure 4 (4%)
T82 202-221 Sentence denotes Comorbid conditions
T83 222-236 Sentence denotes   Any 45 (50%)
T84 237-260 Sentence denotes   Hypertension 17 (19%)
T85 261-278 Sentence denotes   Diabetes 5 (6%)
T86 279-310 Sentence denotes   Cardiovascular disease 3 (3%)
T87 311-357 Sentence denotes   Chronic obstructive pulmonary disease 1 (1%)
T88 358-379 Sentence denotes   Tuberculosis 2 (2%)
T89 380-399 Sentence denotes   Malignancy 2 (2%)
T90 400-417 Sentence denotes   Others 15 (17%)
T91 418-436 Sentence denotes Signs and symptoms
T92 437-453 Sentence denotes   Fever 70 (78%)
T93 454-470 Sentence denotes   Cough 57 (63%)
T94 471-499 Sentence denotes   Sputum production 11 (12%)
T95 500-527 Sentence denotes   Fatigue weakness 19 (21%)
T96 528-546 Sentence denotes   Myalgia 25 (28%)
T97 547-569 Sentence denotes   Sore throat 23 (26%)
T98 570-585 Sentence denotes   Chills 6 (7%)
T99 586-603 Sentence denotes   Headache 4 (4%)
T100 604-621 Sentence denotes   Diarrhea 5 (6%)
T101 622-637 Sentence denotes   Nausea 5 (6%)
T102 638-652 Sentence denotes   Vomit 2 (2%)
T103 653-681 Sentence denotes   No obvious symptoms 6 (7%)
T104 682-697 Sentence denotes Laboratory test
T105 698-744 Sentence denotes   C-reactive protein (mg/L; normal range 0–10)
T106 745-767 Sentence denotes     Increased 38 (42%)
T107 768-781 Sentence denotes     Decreased
T108 782-799 Sentence denotes     Normal 0 (0%)
T109 800-808 Sentence denotes 52 (58%)
T110 809-852 Sentence denotes   Leucocytes (×109/L, normal range 3.5–9.5)
T111 853-873 Sentence denotes     Increased 3 (3%)
T112 874-896 Sentence denotes     Decreased 19 (21%)
T113 897-916 Sentence denotes     Normal 68 (76%)
T114 917-965 Sentence denotes   Positive for (SARS-CoV-2) nucleic acid test by
T115 966-991 Sentence denotes   Real-time PCR 90 (100%)

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T30 239-251 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T31 281-303 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T32 313-350 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T33 439-444 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T34 456-461 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T35 502-509 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T36 530-537 Phenotype denotes Myalgia http://purl.obolibrary.org/obo/HP_0003326
T37 549-560 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T38 572-578 Phenotype denotes Chills http://purl.obolibrary.org/obo/HP_0025143
T39 588-596 Phenotype denotes Headache http://purl.obolibrary.org/obo/HP_0002315
T40 606-614 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T41 624-630 Phenotype denotes Nausea http://purl.obolibrary.org/obo/HP_0002018