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PMC:7080117 / 91-2488 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
12 39-61 Species denotes 2019 novel coronavirus Tax:2697049
13 63-73 Species denotes SARS-CoV-2 Tax:2697049
14 87-96 Species denotes 2019-nCoV Tax:2697049
15 328-336 Species denotes patients Tax:9606
16 351-361 Species denotes SARS-CoV-2 Tax:2697049
17 15-24 Disease denotes pneumonia MESH:D011014
18 151-159 Disease denotes COVID-19 MESH:C000657245
19 337-345 Disease denotes infected MESH:D007239
29 396-404 Species denotes patients Tax:9606
30 604-610 Species denotes People Tax:9606
31 650-658 Species denotes patients Tax:9606
32 663-666 Species denotes men Tax:9606
33 674-679 Species denotes women Tax:9606
34 745-755 Species denotes SARS-CoV-2 Tax:2697049
35 765-773 Species denotes patients Tax:9606
36 886-894 Species denotes patients Tax:9606
37 432-452 Disease denotes SARS-CoV-2 infection MESH:C000657245
53 1166-1174 Species denotes patients Tax:9606
54 1225-1233 Species denotes patients Tax:9606
55 1299-1307 Species denotes patients Tax:9606
56 1397-1405 Species denotes patients Tax:9606
57 1456-1464 Species denotes patients Tax:9606
58 1869-1877 Species denotes patients Tax:9606
59 1891-1899 Species denotes patients Tax:9606
60 1157-1165 Disease denotes infected MESH:D007239
61 1216-1224 Disease denotes infected MESH:D007239
62 1260-1265 Disease denotes fever MESH:D005334
63 1270-1275 Disease denotes cough MESH:D003371
64 1466-1484 Disease denotes COVID-19 pneumonia MESH:C000657245
65 1717-1733 Disease denotes Pleural effusion MESH:D010996
66 1735-1755 Disease denotes pericardial effusion MESH:D010490
67 1761-1776 Disease denotes lymphadenopathy MESH:D008206
72 2039-2046 Species denotes patient Tax:9606
73 1988-2008 Disease denotes SARS-CoV-2 infection MESH:C000657245
74 2207-2234 Disease denotes novel coronavirus pneumonia MESH:C000657245
75 2378-2396 Disease denotes COVID-19 pneumonia MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 806-811 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T2 997-1001 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T3 1066-1071 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T4 1340-1344 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T5 1643-1649 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T6 1823-1828 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T7 2130-2135 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T8 2345-2350 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 806-811 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 997-1001 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T3 1066-1071 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 1340-1344 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T5 1643-1649 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T6 1717-1733 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T7 1823-1828 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 2130-2135 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 2345-2350 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 15-24 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 63-71 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 151-159 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 351-359 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 432-440 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 443-452 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 745-753 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 1466-1474 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1475-1484 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 1735-1755 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T12 1761-1776 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T13 1988-1996 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 1999-2008 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 2225-2234 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T16 2378-2386 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 2387-2396 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 564-565 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 714-716 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T3 806-811 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T4 997-1001 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T5 997-1001 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T6 1066-1071 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T7 1179-1180 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1340-1344 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T9 1340-1344 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T10 1587-1589 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T11 1643-1649 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T12 1717-1733 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T13 1823-1828 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T14 1966-1969 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T15 2123-2128 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T16 2130-2135 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T17 2345-2350 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-10 Sentence denotes Background
T4 11-160 Sentence denotes The pneumonia caused by the 2019 novel coronavirus (SARS-CoV-2, also called 2019-nCoV) recently break out in Wuhan, China, and was named as COVID-19.
T5 161-258 Sentence denotes With the spread of the disease, similar cases have also been confirmed in other regions of China.
T6 259-382 Sentence denotes We aimed to report the imaging and clinical characteristics of these patients infected with SARS-CoV-2 in Guangzhou, China.
T7 384-391 Sentence denotes Methods
T8 392-623 Sentence denotes All patients with laboratory-identified SARS-CoV-2 infection by real-time polymerase chain reaction (PCR) were collected between January 23, 2020, and February 4, 2020, in a designated hospital (Guangzhou Eighth People’s Hospital).
T9 624-727 Sentence denotes This analysis included 90 patients (39 men and 51 women; median age, 50 years (age range, 18–86 years).
T10 728-837 Sentence denotes All the included SARS-CoV-2-infected patients underwent non-contrast enhanced chest computed tomography (CT).
T11 838-1010 Sentence denotes We analyzed the clinical characteristics of the patients, as well as the distribution characteristics, pattern, morphology, and accompanying manifestations of lung lesions.
T12 1011-1130 Sentence denotes In addition, after 1–6 days (mean 3.5 days), follow-up chest CT images were evaluated to assess radiological evolution.
T13 1132-1140 Sentence denotes Findings
T14 1141-1276 Sentence denotes The majority of infected patients had a history of exposure in Wuhan or to infected patients and mostly presented with fever and cough.
T15 1277-1439 Sentence denotes More than half of the patients presented bilateral, multifocal lung lesions, with peripheral distribution, and 53 (59%) patients had more than two lobes involved.
T16 1440-1716 Sentence denotes Of all included patients, COVID-19 pneumonia presented with ground glass opacities in 65 (72%), consolidation in 12 (13%), crazy paving pattern in 11 (12%), interlobular thickening in 33 (37%), adjacent pleura thickening in 50 (56%), and linear opacities combined in 55 (61%).
T17 1717-1800 Sentence denotes Pleural effusion, pericardial effusion, and lymphadenopathy were uncommon findings.
T18 1801-1975 Sentence denotes In addition, baseline chest CT did not show any abnormalities in 21 patients (23%), but 3 patients presented bilateral ground glass opacities on the second CT after 3–4 days.
T19 1977-1987 Sentence denotes Conclusion
T20 1988-2129 Sentence denotes SARS-CoV-2 infection can be confirmed based on the patient’s history, clinical manifestations, imaging characteristics, and laboratory tests.
T21 2130-2235 Sentence denotes Chest CT examination plays an important role in the initial diagnosis of the novel coronavirus pneumonia.
T22 2236-2397 Sentence denotes Multiple patchy ground glass opacities in bilateral multiple lobular with periphery distribution are typical chest CT imaging features of the COVID-19 pneumonia.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 15-24 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 1260-1265 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 1270-1275 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 1475-1484 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 1717-1733 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T6 1735-1755 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T7 1761-1776 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T8 2225-2234 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T9 2387-2396 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090