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PMC:7080117 / 8652-12571 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
227 1338-1356 Gene denotes C-reactive protein Gene:1401
228 1358-1362 Gene denotes mg/L Gene:11343
229 638-646 Species denotes Patients Tax:9606
230 656-663 Species denotes Patient Tax:9606
231 718-721 Species denotes Men Tax:9606
232 733-738 Species denotes Women Tax:9606
233 797-804 Species denotes patient Tax:9606
234 1571-1581 Species denotes SARS-CoV-2 Tax:2697049
235 788-796 Disease denotes infected MESH:D007239
236 877-889 Disease denotes Hypertension MESH:D006973
237 901-909 Disease denotes Diabetes MESH:D003920
238 919-941 Disease denotes Cardiovascular disease MESH:D002318
239 951-988 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
240 998-1010 Disease denotes Tuberculosis MESH:D014376
241 1066-1082 Disease denotes symptoms   Fever MESH:D051271
242 1094-1099 Disease denotes Cough MESH:D003371
243 1140-1159 Disease denotes Fatigue weakness 19 MESH:C000657245
244 1168-1175 Disease denotes Myalgia MESH:D063806
245 1226-1234 Disease denotes Headache MESH:D006261
246 1244-1252 Disease denotes Diarrhea MESH:D003967
247 1262-1268 Disease denotes Nausea MESH:D009325
249 591-598 Species denotes Patient Tax:9606
263 466-484 Gene denotes C-reactive protein Gene:1401
264 31-39 Species denotes patients Tax:9606
265 44-47 Species denotes men Tax:9606
266 55-60 Species denotes women Tax:9606
267 128-136 Species denotes patients Tax:9606
268 169-177 Species denotes patients Tax:9606
269 228-236 Species denotes patients Tax:9606
270 277-285 Species denotes patients Tax:9606
271 303-311 Species denotes patients Tax:9606
272 353-361 Species denotes patients Tax:9606
273 393-401 Species denotes patients Tax:9606
274 441-449 Species denotes patients Tax:9606
275 486-494 Species denotes Patients Tax:9606
281 2476-2484 Species denotes Patients Tax:9606
282 2807-2822 Disease denotes Left upper lobe MESH:D012141
283 3338-3354 Disease denotes Pleural effusion MESH:D010996
284 3394-3409 Disease denotes Lymphadenopathy MESH:D008206
285 3419-3438 Disease denotes Pulmonary emphysema MESH:D011656
288 2435-2443 Species denotes patients Tax:9606
289 2449-2459 Species denotes SARS-CoV-2 Tax:2697049
301 1675-1683 Species denotes patients Tax:9606
302 1698-1706 Species denotes patients Tax:9606
303 1763-1771 Species denotes patients Tax:9606
304 1914-1922 Species denotes patients Tax:9606
305 2015-2023 Species denotes patients Tax:9606
306 2080-2088 Species denotes patients Tax:9606
307 2387-2395 Species denotes patients Tax:9606
308 2245-2261 Disease denotes Pleural effusion MESH:D010996
309 2263-2283 Disease denotes pericardial effusion MESH:D010490
310 2297-2321 Disease denotes thoracic lymphadenopathy MESH:D013896
311 2327-2346 Disease denotes pulmonary emphysema MESH:D011656
313 3828-3836 Species denotes Patients Tax:9606
319 3456-3464 Species denotes patients Tax:9606
320 3528-3536 Species denotes patients Tax:9606
321 3561-3569 Species denotes patients Tax:9606
322 3606-3614 Species denotes patients Tax:9606
323 3661-3669 Species denotes patients Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T29 477-484 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T30 510-527 Body_part denotes white blood cells http://purl.org/sig/ont/fma/fma62852
T31 522-527 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T32 564-581 Body_part denotes white blood cells http://purl.org/sig/ont/fma/fma62852
T33 576-581 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 1111-1117 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T35 1192-1198 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T36 1349-1356 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T37 1449-1459 Body_part denotes Leucocytes http://purl.org/sig/ont/fma/fma62852
T38 1639-1644 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T39 1804-1808 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T40 2226-2232 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T41 2807-2822 Body_part denotes Left upper lobe http://purl.org/sig/ont/fma/fma7370
T42 2834-2849 Body_part denotes Left lower lobe http://purl.org/sig/ont/fma/fma7371
T43 2861-2877 Body_part denotes Right upper lobe http://purl.org/sig/ont/fma/fma7333
T44 2889-2906 Body_part denotes Right middle lobe http://purl.org/sig/ont/fma/fma7383
T45 2918-2934 Body_part denotes Right lower lobe http://purl.org/sig/ont/fma/fma7337
T46 3309-3315 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T47 3476-3481 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T48 3804-3809 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T33 516-521 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T34 570-575 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T35 1111-1117 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T36 1192-1198 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T37 1278-1283 Body_part denotes Vomit http://purl.obolibrary.org/obo/UBERON_0000172
T38 1639-1644 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T39 1804-1808 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T40 2226-2232 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T41 2245-2261 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T42 2777-2781 Body_part denotes Lobe http://purl.obolibrary.org/obo/UBERON_3010752
T43 2818-2822 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T44 2845-2849 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T45 2873-2877 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T46 2902-2906 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T47 2930-2934 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T48 3309-3315 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T49 3338-3354 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T50 3476-3481 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T51 3804-3809 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p24000s3 466-467 MPA denotes C

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T49 877-889 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T50 901-909 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T51 919-941 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T52 951-988 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T53 971-988 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T54 998-1010 Disease denotes Tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T55 1187-1198 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T56 1244-1252 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T57 1571-1579 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 2263-2283 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T59 2306-2321 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T60 2327-2346 Disease denotes pulmonary emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T61 2449-2457 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 3364-3384 Disease denotes Pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T63 3394-3409 Disease denotes Lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T64 3429-3438 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T78 95-97 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T79 182-183 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 516-527 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood cells
T81 570-581 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood cells
T82 709-711 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T83 866-868 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T84 1129-1131 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T85 1331-1335 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T86 1438-1440 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T87 1449-1459 http://purl.obolibrary.org/obo/CL_0000738 denotes Leucocytes
T88 1596-1600 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T89 1639-1644 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T90 1804-1808 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T91 1804-1808 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T92 2006-2008 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T93 2226-2232 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T94 2245-2261 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T95 2715-2718 http://purl.obolibrary.org/obo/CLO_0001382 denotes 4 8
T96 2732-2734 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T97 2823-2825 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T98 2878-2880 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T99 3005-3007 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T100 3119-3121 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T101 3309-3315 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T102 3338-3354 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T103 3474-3475 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 3476-3481 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T105 3723-3726 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T106 3804-3809 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T107 3816-3818 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T108 3842-3844 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 477-484 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 1349-1356 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 1583-1595 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T8 1591-1595 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T64 0-7 Sentence denotes Results
T65 8-108 Sentence denotes This study included 90 patients (39 men and 51 women; median age, 50 years (age range, 18–86 years).
T66 109-163 Sentence denotes Table 1 summarizes patients’ clinical characteristics.
T67 164-286 Sentence denotes Most patients had a history of exposure in Wuhan or to infected patients; exposure history was unknown in 4 (4%) patients.
T68 287-343 Sentence denotes The majority of patients presented with fever and cough.
T69 344-380 Sentence denotes Six (7%) patients were asymptomatic.
T70 381-421 Sentence denotes Half of the patients hold comorbidities.
T71 422-485 Sentence denotes Thirty-eight (42%) patients showed elevated C-reactive protein.
T72 486-582 Sentence denotes Patients with decreased white blood cells were more than those with increased white blood cells.
T73 583-637 Sentence denotes Table 1 Patient characteristics and laboratory results
T74 638-655 Sentence denotes Patients (n = 90)
T75 656-676 Sentence denotes Patient demographics
T76 677-715 Sentence denotes   Median age, years (range) 50 (18–86)
T77 716-730 Sentence denotes   Men 39 (43%)
T78 731-747 Sentence denotes   Women 51 (57%)
T79 748-764 Sentence denotes Exposure history
T80 765-813 Sentence denotes   Exposure to Wuhan or infected patient 86 (96%)
T81 814-839 Sentence denotes   Unknown exposure 4 (4%)
T82 840-859 Sentence denotes Comorbid conditions
T83 860-874 Sentence denotes   Any 45 (50%)
T84 875-898 Sentence denotes   Hypertension 17 (19%)
T85 899-916 Sentence denotes   Diabetes 5 (6%)
T86 917-948 Sentence denotes   Cardiovascular disease 3 (3%)
T87 949-995 Sentence denotes   Chronic obstructive pulmonary disease 1 (1%)
T88 996-1017 Sentence denotes   Tuberculosis 2 (2%)
T89 1018-1037 Sentence denotes   Malignancy 2 (2%)
T90 1038-1055 Sentence denotes   Others 15 (17%)
T91 1056-1074 Sentence denotes Signs and symptoms
T92 1075-1091 Sentence denotes   Fever 70 (78%)
T93 1092-1108 Sentence denotes   Cough 57 (63%)
T94 1109-1137 Sentence denotes   Sputum production 11 (12%)
T95 1138-1165 Sentence denotes   Fatigue weakness 19 (21%)
T96 1166-1184 Sentence denotes   Myalgia 25 (28%)
T97 1185-1207 Sentence denotes   Sore throat 23 (26%)
T98 1208-1223 Sentence denotes   Chills 6 (7%)
T99 1224-1241 Sentence denotes   Headache 4 (4%)
T100 1242-1259 Sentence denotes   Diarrhea 5 (6%)
T101 1260-1275 Sentence denotes   Nausea 5 (6%)
T102 1276-1290 Sentence denotes   Vomit 2 (2%)
T103 1291-1319 Sentence denotes   No obvious symptoms 6 (7%)
T104 1320-1335 Sentence denotes Laboratory test
T105 1336-1382 Sentence denotes   C-reactive protein (mg/L; normal range 0–10)
T106 1383-1405 Sentence denotes     Increased 38 (42%)
T107 1406-1419 Sentence denotes     Decreased
T108 1420-1437 Sentence denotes     Normal 0 (0%)
T109 1438-1446 Sentence denotes 52 (58%)
T110 1447-1490 Sentence denotes   Leucocytes (×109/L, normal range 3.5–9.5)
T111 1491-1511 Sentence denotes     Increased 3 (3%)
T112 1512-1534 Sentence denotes     Decreased 19 (21%)
T113 1535-1554 Sentence denotes     Normal 68 (76%)
T114 1555-1603 Sentence denotes   Positive for (SARS-CoV-2) nucleic acid test by
T115 1604-1629 Sentence denotes   Real-time PCR 90 (100%)
T116 1630-1740 Sentence denotes Baseline chest CT showed abnormalities in 69 patients, and 53 (59%) patients had more than two lobes involved.
T117 1741-1847 Sentence denotes More than half of the patients presented bilateral, multifocal lung lesions, with peripheral distribution.
T118 1848-1903 Sentence denotes Lesions were inclined to distribute in the lower lobes.
T119 1904-2060 Sentence denotes Of the 90 patients included, 65 (72%) had ground glass opacification, 12 (13%) had consolidation, and 11 (12%) patients presented with crazy paving pattern.
T120 2061-2244 Sentence denotes Thirty-three (37%) patients had interlobular thickening, 55 (61%) had combined linear opacities, 7 (8%) showed air bronchogram sign, and 50 (56%) presented adjacent pleura thickening.
T121 2245-2406 Sentence denotes Pleural effusion, pericardial effusion, cavitation, thoracic lymphadenopathy, and pulmonary emphysema were uncommon imaging findings in these patients (Table 2).
T122 2407-2475 Sentence denotes Table 2 Imaging findings of patients with SARS-CoV-2 at presentation
T123 2476-2493 Sentence denotes Patients (n = 90)
T124 2494-2506 Sentence denotes Distribution
T125 2507-2540 Sentence denotes   Periphery distribution 46 (51%)
T126 2541-2573 Sentence denotes   Bilateral involvement 53 (59%)
T127 2574-2607 Sentence denotes   Multifocal involvement 62 (69%)
T128 2608-2637 Sentence denotes   Unifocal involvement 7 (8%)
T129 2638-2662 Sentence denotes Number of lobes involved
T130 2663-2675 Sentence denotes   0 21 (23%)
T131 2676-2688 Sentence denotes   1 12 (13%)
T132 2689-2699 Sentence denotes   2 4 (4%)
T133 2700-2712 Sentence denotes   3 13 (14%)
T134 2713-2723 Sentence denotes   4 8 (9%)
T135 2724-2736 Sentence denotes   5 32 (36%)
T136 2737-2776 Sentence denotes   More than two lobes involved 53 (59%)
T137 2777-2804 Sentence denotes Lobe of lesion distribution
T138 2805-2831 Sentence denotes   Left upper lobe 48 (53%)
T139 2832-2858 Sentence denotes   Left lower lobe 55 (61%)
T140 2859-2886 Sentence denotes   Right upper lobe 48 (53%)
T141 2887-2915 Sentence denotes   Right middle lobe 40 (44%)
T142 2916-2943 Sentence denotes   Right lower lobe 59 (66%)
T143 2944-2976 Sentence denotes   Bilateral upper lobes 40 (44%)
T144 2977-3009 Sentence denotes   Bilateral lower lobes 47 (52%)
T145 3010-3032 Sentence denotes Patterns of the lesion
T146 3033-3070 Sentence denotes   Ground glass opacification 65 (72%)
T147 3071-3095 Sentence denotes   Consolidation 12 (13%)
T148 3096-3127 Sentence denotes   Crazy paving pattern 11 (12%)
T149 3128-3147 Sentence denotes   Cavitation 0 (0%)
T150 3148-3173 Sentence denotes Other signs in the lesion
T151 3174-3215 Sentence denotes   Interlobular septal thickening 33 (37%)
T152 3216-3252 Sentence denotes   Linear opacities combined 55 (61%)
T153 3253-3282 Sentence denotes   Air bronchogram sign 7 (8%)
T154 3283-3297 Sentence denotes Other findings
T155 3298-3335 Sentence denotes   Adjacent pleura thickening 50 (56%)
T156 3336-3361 Sentence denotes   Pleural effusion 4 (4%)
T157 3362-3391 Sentence denotes   Pericardial effusion 1 (1%)
T158 3392-3416 Sentence denotes   Lymphadenopathy 1 (1%)
T159 3417-3445 Sentence denotes   Pulmonary emphysema 0 (0%)
T160 3446-3512 Sentence denotes Fifty-two patients repeated a chest CT examination after 1–6 days.
T161 3513-3655 Sentence denotes Among them, 10 patients (19%) had no changes, 4 patients (8%) had disease resolution, and 38 patients (73%) had disease progression (Table 3).
T162 3656-3772 Sentence denotes In 3 patients (6%) with baseline negative scan, follow-up CT after 3–4 days showed bilateral ground glass opacities.
T163 3773-3827 Sentence denotes Table 3 Image change on repeat chest CT in 52 patients
T164 3828-3845 Sentence denotes Patients (n = 52)
T165 3846-3864 Sentence denotes No change 10 (19%)
T166 3865-3890 Sentence denotes Disease resolution 4 (8%)
T167 3891-3919 Sentence denotes Disease progression 38 (73%)

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T28 327-332 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T29 337-342 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T30 877-889 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T31 919-941 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T32 951-988 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T33 1077-1082 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T34 1094-1099 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T35 1140-1147 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T36 1168-1175 Phenotype denotes Myalgia http://purl.obolibrary.org/obo/HP_0003326
T37 1187-1198 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T38 1210-1216 Phenotype denotes Chills http://purl.obolibrary.org/obo/HP_0025143
T39 1226-1234 Phenotype denotes Headache http://purl.obolibrary.org/obo/HP_0002315
T40 1244-1252 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T41 1262-1268 Phenotype denotes Nausea http://purl.obolibrary.org/obo/HP_0002018
T42 2245-2261 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T43 2263-2283 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T44 2306-2321 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T45 2327-2346 Phenotype denotes pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T46 3338-3354 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T47 3364-3384 Phenotype denotes Pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T48 3394-3409 Phenotype denotes Lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T49 3419-3438 Phenotype denotes Pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097