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PMC:7080117 / 2490-16988 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
82 67-89 Species denotes 2019 novel coronavirus Tax:2697049
83 91-101 Species denotes SARS-CoV-2 Tax:2697049
84 364-372 Species denotes patients Tax:9606
85 43-52 Disease denotes pneumonia MESH:D011014
86 153-161 Disease denotes COVID-19 MESH:C000657245
87 642-670 Disease denotes novel coronavirus infections MESH:C000657245
107 672-682 Species denotes SARS-CoV-2 Tax:2697049
108 688-703 Species denotes betacoronavirus Tax:694002
109 731-744 Species denotes Coronaviridae Tax:11118
110 792-803 Species denotes coronavirus Tax:11118
111 843-849 Species denotes humans Tax:9606
112 1003-1048 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
113 1050-1058 Species denotes SARS-CoV Tax:694009
114 1064-1119 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
115 1152-1162 Species denotes SARS-CoV-2 Tax:2697049
116 1192-1205 Species denotes coronaviruses Tax:11118
117 1219-1225 Species denotes humans Tax:9606
118 1240-1248 Species denotes patients Tax:9606
119 1353-1361 Species denotes SARS-CoV Tax:694009
120 908-918 Disease denotes infections MESH:D007239
121 961-974 Disease denotes cold symptoms MESH:D051271
122 1231-1239 Disease denotes Infected MESH:D007239
123 1278-1283 Disease denotes fever MESH:D005334
124 1285-1290 Disease denotes cough MESH:D003371
125 1366-1385 Disease denotes MERS-CoV infections MESH:D018352
137 1463-1473 Species denotes SARS-CoV-2 Tax:2697049
138 1495-1500 Species denotes human Tax:9606
139 1564-1569 Species denotes child Tax:9606
140 1637-1644 Species denotes patient Tax:9606
141 1682-1699 Species denotes novel coronavirus Tax:2697049
142 1780-1788 Species denotes patients Tax:9606
143 1841-1847 Species denotes people Tax:9606
144 2073-2083 Species denotes SARS-CoV-2 Tax:2697049
145 1443-1452 Disease denotes pneumonia MESH:D011014
146 1794-1814 Disease denotes SARS-CoV-2 infection MESH:C000657245
147 2049-2057 Disease denotes infected MESH:D007239
153 2276-2284 Species denotes patients Tax:9606
154 2349-2357 Species denotes patients Tax:9606
155 2157-2175 Disease denotes lung abnormalities MESH:D008171
156 2290-2310 Disease denotes SARS-CoV-2 infection MESH:C000657245
157 2449-2467 Disease denotes COVID-19 pneumonia MESH:C000657245
162 2774-2782 Species denotes patients Tax:9606
163 2807-2815 Species denotes patients Tax:9606
164 2841-2849 Species denotes patients Tax:9606
165 2877-2897 Disease denotes SARS-CoV-2 infection MESH:C000657245
169 4698-4703 Disease denotes fever MESH:D005334
170 4708-4713 Disease denotes cough MESH:D003371
171 4950-4962 Disease denotes black arrows MESH:D007898
175 5110-5115 Species denotes woman Tax:9606
176 5171-5176 Disease denotes fever MESH:D005334
177 5181-5186 Disease denotes cough MESH:D003371
180 5588-5593 Disease denotes fever MESH:D005334
181 5598-5603 Disease denotes cough MESH:D003371
193 3150-3158 Species denotes patients Tax:9606
194 3252-3258 Species denotes People Tax:9606
195 3582-3589 Species denotes patient Tax:9606
196 3959-3975 Disease denotes pleural effusion MESH:D010996
197 3977-3997 Disease denotes pericardial effusion MESH:D010490
198 3999-4023 Disease denotes thoracic lymphadenopathy MESH:D013896
199 4025-4044 Disease denotes pulmonary emphysema MESH:D011656
200 4056-4071 Disease denotes lymphadenopathy MESH:D008206
201 4536-4549 Disease denotes lung diseases MESH:D008171
202 4559-4571 Disease denotes tuberculosis MESH:D014376
203 4573-4584 Disease denotes lung cancer MESH:D008175
205 5893-5901 Species denotes patients Tax:9606
227 7500-7518 Gene denotes C-reactive protein Gene:1401
228 7520-7524 Gene denotes mg/L Gene:11343
229 6800-6808 Species denotes Patients Tax:9606
230 6818-6825 Species denotes Patient Tax:9606
231 6880-6883 Species denotes Men Tax:9606
232 6895-6900 Species denotes Women Tax:9606
233 6959-6966 Species denotes patient Tax:9606
234 7733-7743 Species denotes SARS-CoV-2 Tax:2697049
235 6950-6958 Disease denotes infected MESH:D007239
236 7039-7051 Disease denotes Hypertension MESH:D006973
237 7063-7071 Disease denotes Diabetes MESH:D003920
238 7081-7103 Disease denotes Cardiovascular disease MESH:D002318
239 7113-7150 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
240 7160-7172 Disease denotes Tuberculosis MESH:D014376
241 7228-7244 Disease denotes symptoms   Fever MESH:D051271
242 7256-7261 Disease denotes Cough MESH:D003371
243 7302-7321 Disease denotes Fatigue weakness 19 MESH:C000657245
244 7330-7337 Disease denotes Myalgia MESH:D063806
245 7388-7396 Disease denotes Headache MESH:D006261
246 7406-7414 Disease denotes Diarrhea MESH:D003967
247 7424-7430 Disease denotes Nausea MESH:D009325
249 6753-6760 Species denotes Patient Tax:9606
263 6628-6646 Gene denotes C-reactive protein Gene:1401
264 6193-6201 Species denotes patients Tax:9606
265 6206-6209 Species denotes men Tax:9606
266 6217-6222 Species denotes women Tax:9606
267 6290-6298 Species denotes patients Tax:9606
268 6331-6339 Species denotes patients Tax:9606
269 6390-6398 Species denotes patients Tax:9606
270 6439-6447 Species denotes patients Tax:9606
271 6465-6473 Species denotes patients Tax:9606
272 6515-6523 Species denotes patients Tax:9606
273 6555-6563 Species denotes patients Tax:9606
274 6603-6611 Species denotes patients Tax:9606
275 6648-6656 Species denotes Patients Tax:9606
281 8638-8646 Species denotes Patients Tax:9606
282 8969-8984 Disease denotes Left upper lobe MESH:D012141
283 9500-9516 Disease denotes Pleural effusion MESH:D010996
284 9556-9571 Disease denotes Lymphadenopathy MESH:D008206
285 9581-9600 Disease denotes Pulmonary emphysema MESH:D011656
288 8597-8605 Species denotes patients Tax:9606
289 8611-8621 Species denotes SARS-CoV-2 Tax:2697049
301 7837-7845 Species denotes patients Tax:9606
302 7860-7868 Species denotes patients Tax:9606
303 7925-7933 Species denotes patients Tax:9606
304 8076-8084 Species denotes patients Tax:9606
305 8177-8185 Species denotes patients Tax:9606
306 8242-8250 Species denotes patients Tax:9606
307 8549-8557 Species denotes patients Tax:9606
308 8407-8423 Disease denotes Pleural effusion MESH:D010996
309 8425-8445 Disease denotes pericardial effusion MESH:D010490
310 8459-8483 Disease denotes thoracic lymphadenopathy MESH:D013896
311 8489-8508 Disease denotes pulmonary emphysema MESH:D011656
313 9990-9998 Species denotes Patients Tax:9606
319 9618-9626 Species denotes patients Tax:9606
320 9690-9698 Species denotes patients Tax:9606
321 9723-9731 Species denotes patients Tax:9606
322 9768-9776 Species denotes patients Tax:9606
323 9823-9831 Species denotes patients Tax:9606
328 10127-10135 Species denotes patients Tax:9606
329 10192-10200 Species denotes patients Tax:9606
330 10226-10236 Species denotes SARS-CoV-2 Tax:2697049
331 10183-10191 Disease denotes infected MESH:D007239
341 10308-10316 Species denotes patients Tax:9606
342 10377-10385 Species denotes patients Tax:9606
343 10517-10524 Species denotes Persons Tax:9606
344 10561-10571 Species denotes SARS-CoV-2 Tax:2697049
345 10704-10712 Species denotes patients Tax:9606
346 10299-10307 Disease denotes Infected MESH:D007239
347 10346-10351 Disease denotes fever MESH:D005334
348 10356-10361 Disease denotes cough MESH:D003371
349 10506-10515 Disease denotes infection MESH:D007239
354 10815-10823 Species denotes patients Tax:9606
355 10838-10848 Species denotes SARS-CoV-2 Tax:2697049
356 10824-10832 Disease denotes infected MESH:D007239
357 10912-10930 Disease denotes lung abnormalities MESH:D008171
366 11159-11167 Species denotes patients Tax:9606
367 11309-11317 Species denotes patients Tax:9606
368 11538-11546 Species denotes patients Tax:9606
369 11180-11200 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
370 11396-11412 Disease denotes Pleural effusion MESH:D010996
371 11414-11434 Disease denotes pericardial effusion MESH:D010490
372 11448-11472 Disease denotes thoracic lymphadenopathy MESH:D013896
373 11478-11497 Disease denotes pulmonary emphysema MESH:D011656
388 12107-12117 Species denotes SARS-CoV-2 Tax:2697049
389 12140-12153 Species denotes Coronaviridae Tax:11118
390 12196-12206 Species denotes SARS-CoV-2 Tax:2697049
391 12222-12230 Species denotes SARS-CoV Tax:694009
392 12410-12418 Species denotes patients Tax:9606
393 12601-12611 Species denotes SARS-CoV-2 Tax:2697049
394 12645-12658 Species denotes coronaviruses Tax:11118
395 11860-11865 Chemical denotes water MESH:D014867
396 11577-11587 Disease denotes infections MESH:D007239
397 11904-11919 Disease denotes viral pneumonia
398 11960-11975 Disease denotes viral infection MESH:D001102
399 11982-11997 Disease denotes viral pneumonia
400 12235-12253 Disease denotes MERS-CoV infection MESH:D018352
401 12365-12369 Disease denotes MERS MESH:D018352
408 12738-12746 Species denotes patients Tax:9606
409 12761-12769 Species denotes patients Tax:9606
410 12924-12934 Species denotes SARS-CoV-2 Tax:2697049
411 12943-12950 Species denotes patient Tax:9606
412 12905-12914 Disease denotes infection MESH:D007239
413 13076-13091 Disease denotes CoV-2 infection MESH:C000657245
419 13139-13147 Species denotes patients Tax:9606
420 13171-13181 Species denotes SARS-CoV-2 Tax:2697049
421 13274-13282 Species denotes patients Tax:9606
422 13309-13319 Species denotes SARS-CoV-2 Tax:2697049
423 13377-13384 Species denotes patient Tax:9606
425 13725-13733 Species denotes patients Tax:9606
432 14084-14092 Species denotes patients Tax:9606
433 14180-14187 Species denotes patient Tax:9606
434 14247-14254 Species denotes patient Tax:9606
435 14227-14246 Disease denotes SARS-CoV-2-infected MESH:C000657245
436 14380-14412 Disease denotes 2019 novel coronavirus infection MESH:C000657245
437 14467-14487 Disease denotes SARS-CoV-2 infection MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T9 1322-1326 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T10 1587-1591 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T11 2061-2066 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T12 2104-2109 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T13 2157-2161 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 3178-3183 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T15 3452-3457 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T16 3940-3946 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T17 4087-4097 Body_part denotes lymph node http://purl.org/sig/ont/fma/fma5034
T18 4123-4127 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T19 4536-4540 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T20 4573-4577 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T21 4753-4758 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T22 4942-4948 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T23 5021-5037 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T24 5223-5228 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T25 5644-5649 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T26 5751-5757 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T27 5921-5926 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T28 6076-6080 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T29 6639-6646 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T30 6672-6689 Body_part denotes white blood cells http://purl.org/sig/ont/fma/fma62852
T31 6684-6689 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T32 6726-6743 Body_part denotes white blood cells http://purl.org/sig/ont/fma/fma62852
T33 6738-6743 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 7273-7279 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T35 7354-7360 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T36 7511-7518 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T37 7611-7621 Body_part denotes Leucocytes http://purl.org/sig/ont/fma/fma62852
T38 7801-7806 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T39 7966-7970 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T40 8388-8394 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T41 8969-8984 Body_part denotes Left upper lobe http://purl.org/sig/ont/fma/fma7370
T42 8996-9011 Body_part denotes Left lower lobe http://purl.org/sig/ont/fma/fma7371
T43 9023-9039 Body_part denotes Right upper lobe http://purl.org/sig/ont/fma/fma7333
T44 9051-9068 Body_part denotes Right middle lobe http://purl.org/sig/ont/fma/fma7383
T45 9080-9096 Body_part denotes Right lower lobe http://purl.org/sig/ont/fma/fma7337
T46 9471-9477 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T47 9638-9643 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T48 9966-9971 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T49 10892-10897 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T50 10912-10916 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T51 11745-11753 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T52 11848-11853 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T53 11870-11875 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T54 12464-12469 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T55 13240-13245 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T56 13619-13624 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T57 13760-13765 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T58 14045-14050 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T59 14068-14072 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T60 14345-14350 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T61 14420-14425 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T10 1322-1326 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T11 1587-1591 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 2061-2066 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 2104-2109 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T14 2157-2161 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 3178-3183 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T16 3452-3457 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T17 3668-3672 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T18 3940-3946 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T19 3959-3975 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T20 4087-4097 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T21 4087-4092 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T22 4362-4369 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T23 4536-4540 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T24 4573-4577 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 4753-4758 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T26 4942-4948 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T27 5033-5037 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T28 5223-5228 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T29 5644-5649 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T30 5751-5757 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T31 5921-5926 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T32 6076-6080 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T33 6678-6683 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T34 6732-6737 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T35 7273-7279 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T36 7354-7360 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T37 7440-7445 Body_part denotes Vomit http://purl.obolibrary.org/obo/UBERON_0000172
T38 7801-7806 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T39 7966-7970 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T40 8388-8394 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T41 8407-8423 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T42 8939-8943 Body_part denotes Lobe http://purl.obolibrary.org/obo/UBERON_3010752
T43 8980-8984 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T44 9007-9011 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T45 9035-9039 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T46 9064-9068 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T47 9092-9096 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T48 9471-9477 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T49 9500-9516 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T50 9638-9643 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T51 9966-9971 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T52 10892-10897 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T53 10912-10916 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T54 11396-11412 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T55 11848-11853 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T56 11855-11858 Body_part denotes pus http://purl.obolibrary.org/obo/UBERON_0000177
T57 12464-12469 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T58 13240-13245 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T59 13619-13624 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T60 13760-13765 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T61 14045-14050 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T62 14068-14072 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T63 14345-14350 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T64 14420-14425 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p24000s3 6628-6629 MPA denotes C

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 43-52 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T19 91-99 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 153-161 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 660-670 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T22 672-680 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 908-918 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T24 954-965 Disease denotes common cold http://purl.obolibrary.org/obo/MONDO_0005709
T25 1003-1036 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T26 1050-1058 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 1152-1160 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 1353-1361 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 1375-1385 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T30 1443-1452 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T31 1463-1471 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 1794-1802 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 1805-1814 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 2073-2081 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 2290-2298 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 2301-2310 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 2449-2457 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 2458-2467 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T39 2877-2885 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 2888-2897 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 3977-3997 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T42 4008-4023 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T43 4025-4044 Disease denotes pulmonary emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T44 4056-4071 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T45 4536-4549 Disease denotes lung diseases http://purl.obolibrary.org/obo/MONDO_0005275
T46 4559-4571 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T47 4573-4584 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T48 4578-4584 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T49 7039-7051 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T50 7063-7071 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T51 7081-7103 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T52 7113-7150 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T53 7133-7150 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T54 7160-7172 Disease denotes Tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T55 7349-7360 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T56 7406-7414 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T57 7733-7741 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 8425-8445 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T59 8468-8483 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T60 8489-8508 Disease denotes pulmonary emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T61 8611-8619 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 9526-9546 Disease denotes Pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T63 9556-9571 Disease denotes Lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T64 9591-9600 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T65 10226-10234 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T66 10506-10515 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T67 10561-10569 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T68 10838-10846 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 11180-11188 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T70 11191-11200 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T71 11414-11434 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T72 11457-11472 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T73 11478-11497 Disease denotes pulmonary emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T74 11568-11587 Disease denotes viruses’ infections http://purl.obolibrary.org/obo/MONDO_0005108
T75 11904-11919 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T76 11910-11919 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T77 11960-11975 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T78 11966-11975 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T79 11982-11997 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T80 11988-11997 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T81 12107-12115 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 12196-12204 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 12222-12230 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 12244-12253 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T85 12356-12360 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T86 12601-12609 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T87 12905-12914 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T88 12924-12932 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T89 13071-13079 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 13082-13091 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T91 13171-13179 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T92 13309-13317 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T93 14227-14235 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 14380-14412 Disease denotes 2019 novel coronavirus infection http://purl.obolibrary.org/obo/MONDO_0100096
T95 14403-14412 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T96 14467-14475 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T97 14478-14487 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T18 31-32 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 227-228 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 514-515 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 590-591 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 620-623 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T23 686-687 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 843-849 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T25 1219-1225 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T26 1322-1326 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T27 1322-1326 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T28 1391-1392 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T29 1421-1422 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1495-1500 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 1550-1554 http://purl.obolibrary.org/obo/CLO_0001550 denotes a 10
T32 1587-1591 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T33 1587-1591 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T34 1853-1854 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 2061-2066 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 2097-2102 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T37 2104-2109 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T38 2157-2161 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T39 2157-2161 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T40 2346-2348 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T41 3178-3183 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T42 3212-3213 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 3452-3457 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T44 3506-3507 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 3543-3550 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T46 3601-3602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 3635-3636 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T48 3940-3946 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T49 3959-3975 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T50 4087-4097 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
T51 4362-4369 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T52 4536-4540 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T53 4536-4540 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T54 4573-4577 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T55 4573-4577 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T56 4626-4627 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T57 4726-4727 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 4729-4730 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T59 4753-4758 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T60 4942-4948 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T61 5094-5097 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2 A
T62 5199-5200 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 5223-5228 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T64 5321-5322 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T65 5502-5503 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T66 5525-5526 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 5550-5551 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 5608-5610 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T69 5617-5618 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 5620-5621 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T71 5644-5649 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T72 5751-5757 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T73 5912-5913 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 5921-5926 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T75 6044-6045 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 6076-6080 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T77 6076-6080 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T78 6257-6259 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T79 6344-6345 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 6678-6689 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood cells
T81 6732-6743 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood cells
T82 6871-6873 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T83 7028-7030 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T84 7291-7293 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T85 7493-7497 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T86 7600-7602 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T87 7611-7621 http://purl.obolibrary.org/obo/CL_0000738 denotes Leucocytes
T88 7758-7762 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T89 7801-7806 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T90 7966-7970 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T91 7966-7970 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T92 8168-8170 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T93 8388-8394 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T94 8407-8423 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T95 8877-8880 http://purl.obolibrary.org/obo/CLO_0001382 denotes 4 8
T96 8894-8896 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T97 8985-8987 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T98 9040-9042 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T99 9167-9169 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T100 9281-9283 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T101 9471-9477 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T102 9500-9516 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T103 9636-9637 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 9638-9643 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T105 9885-9888 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T106 9966-9971 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T107 9978-9980 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T108 10004-10006 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T109 10140-10141 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 10237-10240 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T111 10530-10531 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 10735-10736 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 10892-10897 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T114 10912-10916 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T115 10912-10916 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T116 11396-11412 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T117 11568-11575 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T118 11641-11642 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T119 11762-11764 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T120 11848-11853 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T121 11848-11853 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T122 11870-11875 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T123 12464-12469 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T124 12515-12516 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 12569-12570 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T126 12735-12737 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T127 12941-12942 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T128 13195-13199 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T129 13240-13245 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T130 13262-13263 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 13333-13337 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T132 13461-13466 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T133 13619-13624 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T134 13722-13724 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T135 13760-13765 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T136 14045-14050 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T137 14068-14072 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T138 14068-14072 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T139 14178-14179 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 14193-14194 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T141 14225-14226 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 14343-14344 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 14345-14350 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T144 14368-14369 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T145 14378-14379 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 14420-14425 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2084-2096 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T2 2092-2096 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T3 3297-3299 Chemical denotes GE http://purl.obolibrary.org/obo/CHEBI_73801
T4 3328-3330 Chemical denotes WI http://purl.obolibrary.org/obo/CHEBI_141448
T5 6639-6646 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 7511-7518 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 7745-7757 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T8 7753-7757 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T9 11860-11865 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T10 13182-13194 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T11 13190-13194 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T12 13320-13332 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T13 13328-13332 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 11944-11956 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T2 11960-11975 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T3 12088-12100 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T4 13109-13119 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T23 0-12 Sentence denotes Introduction
T24 13-136 Sentence denotes In December 2019, a series of pneumonia caused by the 2019 novel coronavirus (SARS-CoV-2) break out in Wuhan, Hubei, China.
T25 137-201 Sentence denotes Since then, the COVID-19 confirmed cases are increasing rapidly.
T26 202-373 Sentence denotes As of February 10, 2020, a total of 40,265 confirmed cases have been reported in China, with another 23,589 suspected cases, 909 fatal cases, and 3501 discharged patients.
T27 374-455 Sentence denotes Moreover, more than 300 similar cases have been identified in other 24 countries.
T28 456-671 Sentence denotes On December 30, 2019, WHO announced the event constituted a Public Health Emergency of International Concern (PHEIC), indicating that a big threat to global health has been posed by the novel coronavirus infections.
T29 672-775 Sentence denotes SARS-CoV-2 is a betacoronavirus that belongs to the family Coronaviridae and the order Nidovirales [1].
T30 776-868 Sentence denotes Up to date, six coronavirus species have been identified to infect humans and cause disease.
T31 869-979 Sentence denotes Among them, 229E, OC43, NL63, and HKU1 infections are frequently mild, mostly caused common cold symptoms [2].
T32 980-1151 Sentence denotes The other two species, severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV), might cause fatal illness [3].
T33 1152-1230 Sentence denotes SARS-CoV-2 is the seventh member of the coronaviruses that infects humans [4].
T34 1231-1390 Sentence denotes Infected patients predominantly presented with fever, cough, and radiological ground glass lung opacities, which resemble SARS-CoV and MERS-CoV infections [5].
T35 1391-1533 Sentence denotes A recent publication reported a familial cluster of pneumonia linked to SARS-CoV-2, which indicated the human transmission of the disease [6].
T36 1534-1632 Sentence denotes In this family, a 10-year-old child had ground glass lung opacification, but no clinical symptoms.
T37 1633-1745 Sentence denotes The patient was confirmed to be affected by this novel coronavirus by real-time polymerase chain reaction (PCR).
T38 1746-1832 Sentence denotes These findings indicate that some patients with SARS-CoV-2 infection are asymptomatic.
T39 1833-2103 Sentence denotes If some people have a clear history of exposure, regardless of clinical symptoms, or if they present suggestive clinical manifestations, regardless of history of exposure, it is necessary to confirm whether they are infected by chest CT or SARS-CoV-2 nucleic acid tests.
T40 2104-2206 Sentence denotes Chest CT plays an important role in timely detecting lung abnormalities, allowing for early treatment.
T41 2207-2358 Sentence denotes We aimed at describing clinical and CT imaging characteristics of 90 patients with SARS-CoV-2 infection and early follow-up appearances of 52 patients.
T42 2359-2493 Sentence denotes We hope our findings will provide useful information for medical imagers to recognize the COVID-19 pneumonia and assess its evolution.
T43 2495-2516 Sentence denotes Materials and methods
T44 2518-2526 Sentence denotes Patients
T45 2527-2616 Sentence denotes The study was conducted in accordance with the principles of the Declaration of Helsinki.
T46 2617-2836 Sentence denotes Our institutional review board waived written informed consent for this retrospective study that evaluated de-identified data involving no potential risk to patients and no link between the patients and the researchers.
T47 2837-2977 Sentence denotes All patients with laboratory-identified SARS-CoV-2 infection by real-time PCR were collected between January 23, 2020, and February 4, 2020.
T48 2978-3104 Sentence denotes The clinical data analyzed were as follows: age, sex, exposure history, comorbid conditions, symptoms, and laboratory results.
T49 3106-3136 Sentence denotes Image acquisition and analysis
T50 3137-3271 Sentence denotes All included patients underwent baseline chest non-contrast enhanced CT in a designated hospital (Guangzhou Eighth People’s Hospital).
T51 3272-3412 Sentence denotes An Optima CT680 scanner (GE Medical Systems, Milwaukee, WI) was used and set at 210 mA and 120 kV, with the minimum slice thickness of 1 mm.
T52 3413-3526 Sentence denotes All images were analyzed by two senior chest radiologists with 15–20 years of experience, in a consistent manner.
T53 3527-4046 Sentence denotes Image analysis, focused on the lesion features of each patient, included (a) distribution characteristics, (b) number of lobes involved, (c) lobe of lesion distribution, (d) patterns of the lesion (e.g., ground glass opacification, consolidation, cavitation, crazy paving pattern), (e) other signs in the lesion (e.g., interlobular septal thickening, air bronchogram sign), and (f) other findings (e.g., adjacent pleura thickening, pleural effusion, pericardial effusion, thoracic lymphadenopathy, pulmonary emphysema).
T54 4047-4498 Sentence denotes Thoracic lymphadenopathy was defined as lymph node size of ≥ 10 mm in short-axis; ground glass opacification was defined as hazy opacity that did not obscure underlying bronchial and vascular margins (Figs. 1 and 2); consolidation was defined as opacification with obscuration of bronchial structures and pulmonary vessels [7]; crazy paving pattern was defined as ground glass opacification with associated interlobular septal thickening [8] (Fig. 3).
T55 4499-4618 Sentence denotes The alterations caused by underlying lung diseases (such as tuberculosis, lung cancer) were not included in this study.
T56 4619-4964 Sentence denotes Fig. 1 A 49-year-old man with history of recent travel to Wuhan presented with fever and cough for 6 days. a, b Non-contrast enhanced chest CT showed multiple peripheral patchy ground glass opacities in bilateral multiple lobular and subsegmental with obscure boundary (white arrows), as well as thickening of the adjacent pleura (black arrows).
T57 4965-5088 Sentence denotes Besides, CT scan also demonstrated consolidation in the right lower lobe and air bronchogram sign in the lesion (red arrow)
T58 5089-5494 Sentence denotes Fig. 2 A 49-year-old woman with history of recent travel to Wuhan, presented with fever and cough for 8 days. a Non-contrast enhanced chest CT demonstrated multiple ground glass opacification in the both lower lobes (white arrows). b After 4 days, the follow-up CT scan showed enlarged lesions and increased density of the lesions compared with previous images, indicating disease progression (red arrows)
T59 5495-5758 Sentence denotes Fig. 3 A 62-year-old man with a history of exposure to a market in Guangzhou, presented with fever and cough for 11 days. a, b Non-contrast enhanced chest CT showed multiple ground glass opacification in the both lower lobes and thickening of the adjacent pleura.
T60 5759-5882 Sentence denotes The interlobular septal thickening in regions of ground glass opacification, representing crazy paving pattern (red arrows)
T61 5883-5961 Sentence denotes Fifty-two patients underwent a second chest CT after 1–6 days (mean 3.5 days).
T62 5962-6064 Sentence denotes These images were evaluated for lesions’ evolution by two senior radiologists, in a consistent manner.
T63 6065-6160 Sentence denotes Changes in lung lesions were divided as no change, disease resolution, and disease progression.
T64 6162-6169 Sentence denotes Results
T65 6170-6270 Sentence denotes This study included 90 patients (39 men and 51 women; median age, 50 years (age range, 18–86 years).
T66 6271-6325 Sentence denotes Table 1 summarizes patients’ clinical characteristics.
T67 6326-6448 Sentence denotes Most patients had a history of exposure in Wuhan or to infected patients; exposure history was unknown in 4 (4%) patients.
T68 6449-6505 Sentence denotes The majority of patients presented with fever and cough.
T69 6506-6542 Sentence denotes Six (7%) patients were asymptomatic.
T70 6543-6583 Sentence denotes Half of the patients hold comorbidities.
T71 6584-6647 Sentence denotes Thirty-eight (42%) patients showed elevated C-reactive protein.
T72 6648-6744 Sentence denotes Patients with decreased white blood cells were more than those with increased white blood cells.
T73 6745-6799 Sentence denotes Table 1 Patient characteristics and laboratory results
T74 6800-6817 Sentence denotes Patients (n = 90)
T75 6818-6838 Sentence denotes Patient demographics
T76 6839-6877 Sentence denotes   Median age, years (range) 50 (18–86)
T77 6878-6892 Sentence denotes   Men 39 (43%)
T78 6893-6909 Sentence denotes   Women 51 (57%)
T79 6910-6926 Sentence denotes Exposure history
T80 6927-6975 Sentence denotes   Exposure to Wuhan or infected patient 86 (96%)
T81 6976-7001 Sentence denotes   Unknown exposure 4 (4%)
T82 7002-7021 Sentence denotes Comorbid conditions
T83 7022-7036 Sentence denotes   Any 45 (50%)
T84 7037-7060 Sentence denotes   Hypertension 17 (19%)
T85 7061-7078 Sentence denotes   Diabetes 5 (6%)
T86 7079-7110 Sentence denotes   Cardiovascular disease 3 (3%)
T87 7111-7157 Sentence denotes   Chronic obstructive pulmonary disease 1 (1%)
T88 7158-7179 Sentence denotes   Tuberculosis 2 (2%)
T89 7180-7199 Sentence denotes   Malignancy 2 (2%)
T90 7200-7217 Sentence denotes   Others 15 (17%)
T91 7218-7236 Sentence denotes Signs and symptoms
T92 7237-7253 Sentence denotes   Fever 70 (78%)
T93 7254-7270 Sentence denotes   Cough 57 (63%)
T94 7271-7299 Sentence denotes   Sputum production 11 (12%)
T95 7300-7327 Sentence denotes   Fatigue weakness 19 (21%)
T96 7328-7346 Sentence denotes   Myalgia 25 (28%)
T97 7347-7369 Sentence denotes   Sore throat 23 (26%)
T98 7370-7385 Sentence denotes   Chills 6 (7%)
T99 7386-7403 Sentence denotes   Headache 4 (4%)
T100 7404-7421 Sentence denotes   Diarrhea 5 (6%)
T101 7422-7437 Sentence denotes   Nausea 5 (6%)
T102 7438-7452 Sentence denotes   Vomit 2 (2%)
T103 7453-7481 Sentence denotes   No obvious symptoms 6 (7%)
T104 7482-7497 Sentence denotes Laboratory test
T105 7498-7544 Sentence denotes   C-reactive protein (mg/L; normal range 0–10)
T106 7545-7567 Sentence denotes     Increased 38 (42%)
T107 7568-7581 Sentence denotes     Decreased
T108 7582-7599 Sentence denotes     Normal 0 (0%)
T109 7600-7608 Sentence denotes 52 (58%)
T110 7609-7652 Sentence denotes   Leucocytes (×109/L, normal range 3.5–9.5)
T111 7653-7673 Sentence denotes     Increased 3 (3%)
T112 7674-7696 Sentence denotes     Decreased 19 (21%)
T113 7697-7716 Sentence denotes     Normal 68 (76%)
T114 7717-7765 Sentence denotes   Positive for (SARS-CoV-2) nucleic acid test by
T115 7766-7791 Sentence denotes   Real-time PCR 90 (100%)
T116 7792-7902 Sentence denotes Baseline chest CT showed abnormalities in 69 patients, and 53 (59%) patients had more than two lobes involved.
T117 7903-8009 Sentence denotes More than half of the patients presented bilateral, multifocal lung lesions, with peripheral distribution.
T118 8010-8065 Sentence denotes Lesions were inclined to distribute in the lower lobes.
T119 8066-8222 Sentence denotes Of the 90 patients included, 65 (72%) had ground glass opacification, 12 (13%) had consolidation, and 11 (12%) patients presented with crazy paving pattern.
T120 8223-8406 Sentence denotes Thirty-three (37%) patients had interlobular thickening, 55 (61%) had combined linear opacities, 7 (8%) showed air bronchogram sign, and 50 (56%) presented adjacent pleura thickening.
T121 8407-8568 Sentence denotes Pleural effusion, pericardial effusion, cavitation, thoracic lymphadenopathy, and pulmonary emphysema were uncommon imaging findings in these patients (Table 2).
T122 8569-8637 Sentence denotes Table 2 Imaging findings of patients with SARS-CoV-2 at presentation
T123 8638-8655 Sentence denotes Patients (n = 90)
T124 8656-8668 Sentence denotes Distribution
T125 8669-8702 Sentence denotes   Periphery distribution 46 (51%)
T126 8703-8735 Sentence denotes   Bilateral involvement 53 (59%)
T127 8736-8769 Sentence denotes   Multifocal involvement 62 (69%)
T128 8770-8799 Sentence denotes   Unifocal involvement 7 (8%)
T129 8800-8824 Sentence denotes Number of lobes involved
T130 8825-8837 Sentence denotes   0 21 (23%)
T131 8838-8850 Sentence denotes   1 12 (13%)
T132 8851-8861 Sentence denotes   2 4 (4%)
T133 8862-8874 Sentence denotes   3 13 (14%)
T134 8875-8885 Sentence denotes   4 8 (9%)
T135 8886-8898 Sentence denotes   5 32 (36%)
T136 8899-8938 Sentence denotes   More than two lobes involved 53 (59%)
T137 8939-8966 Sentence denotes Lobe of lesion distribution
T138 8967-8993 Sentence denotes   Left upper lobe 48 (53%)
T139 8994-9020 Sentence denotes   Left lower lobe 55 (61%)
T140 9021-9048 Sentence denotes   Right upper lobe 48 (53%)
T141 9049-9077 Sentence denotes   Right middle lobe 40 (44%)
T142 9078-9105 Sentence denotes   Right lower lobe 59 (66%)
T143 9106-9138 Sentence denotes   Bilateral upper lobes 40 (44%)
T144 9139-9171 Sentence denotes   Bilateral lower lobes 47 (52%)
T145 9172-9194 Sentence denotes Patterns of the lesion
T146 9195-9232 Sentence denotes   Ground glass opacification 65 (72%)
T147 9233-9257 Sentence denotes   Consolidation 12 (13%)
T148 9258-9289 Sentence denotes   Crazy paving pattern 11 (12%)
T149 9290-9309 Sentence denotes   Cavitation 0 (0%)
T150 9310-9335 Sentence denotes Other signs in the lesion
T151 9336-9377 Sentence denotes   Interlobular septal thickening 33 (37%)
T152 9378-9414 Sentence denotes   Linear opacities combined 55 (61%)
T153 9415-9444 Sentence denotes   Air bronchogram sign 7 (8%)
T154 9445-9459 Sentence denotes Other findings
T155 9460-9497 Sentence denotes   Adjacent pleura thickening 50 (56%)
T156 9498-9523 Sentence denotes   Pleural effusion 4 (4%)
T157 9524-9553 Sentence denotes   Pericardial effusion 1 (1%)
T158 9554-9578 Sentence denotes   Lymphadenopathy 1 (1%)
T159 9579-9607 Sentence denotes   Pulmonary emphysema 0 (0%)
T160 9608-9674 Sentence denotes Fifty-two patients repeated a chest CT examination after 1–6 days.
T161 9675-9817 Sentence denotes Among them, 10 patients (19%) had no changes, 4 patients (8%) had disease resolution, and 38 patients (73%) had disease progression (Table 3).
T162 9818-9934 Sentence denotes In 3 patients (6%) with baseline negative scan, follow-up CT after 3–4 days showed bilateral ground glass opacities.
T163 9935-9989 Sentence denotes Table 3 Image change on repeat chest CT in 52 patients
T164 9990-10007 Sentence denotes Patients (n = 52)
T165 10008-10026 Sentence denotes No change 10 (19%)
T166 10027-10052 Sentence denotes Disease resolution 4 (8%)
T167 10053-10081 Sentence denotes Disease progression 38 (73%)
T168 10083-10093 Sentence denotes Discussion
T169 10094-10298 Sentence denotes Considering that the majority of patients had a clear history of exposure in Wuhan or to infected patients, our data confirmed that SARS-CoV-2 has the ability for person-to-person transmission [6, 9, 10].
T170 10299-10362 Sentence denotes Infected patients predominantly presented with fever and cough.
T171 10363-10409 Sentence denotes Notably, some patients (7%) were asymptomatic.
T172 10410-10516 Sentence denotes These findings indicated that the absence of clinical symptoms cannot rule out the diagnosis of infection.
T173 10517-10692 Sentence denotes Persons with a clear history of exposure to SARS-CoV-2, regardless of clinical symptoms, should be considered for medical observation, home isolation, and further examination.
T174 10693-10799 Sentence denotes Similarly, patients with symptoms without a known history of exposure should undergo further examinations.
T175 10800-10891 Sentence denotes The numbers of patients infected with SARS-CoV-2 is rapidly increasing nationwide in China.
T176 10892-11106 Sentence denotes Chest CT can detect lung abnormalities with high sensitivity, which is quite helpful for early diagnosis of the disease that can trigger early treatment, which facilitates the containment of this emergency disease.
T177 11107-11277 Sentence denotes Our study showed some common CT imaging features in patients affected by SARS-CoV-2 pneumonia: bilateral, multifocal ground glass opacities, with peripheral distribution.
T178 11278-11395 Sentence denotes Of note, more than half of the patients had multilobar involvement and lesions were more frequent in the lower lobes.
T179 11396-11547 Sentence denotes Pleural effusion, pericardial effusion, cavitation, thoracic lymphadenopathy, and pulmonary emphysema were uncommon imaging findings in these patients.
T180 11548-11640 Sentence denotes Imaging features of viruses’ infections usually appear as multifocal ground glass opacities.
T181 11641-11766 Sentence denotes A previous study identified that ground glass opacities on CT images correspond to pathological diffuse alveolar damage [11].
T182 11767-11876 Sentence denotes Histologically, the opacity of ground glass may be caused by alveoli filled with blood, pus, water, or cells.
T183 11877-11976 Sentence denotes The CT imaging features of viral pneumonia are associated with the pathogenesis of viral infection.
T184 11977-12106 Sentence denotes Most viral pneumonia shares similar imaging features in the same Viridae family because of similarities in the pathogenesis [12].
T185 12107-12254 Sentence denotes SARS-CoV-2 belongs to the family Coronaviridae, so, as expected, the imaging features of SARS-CoV-2 are similar to SARS-CoV and MERS-CoV infection.
T186 12255-12379 Sentence denotes Nonetheless, unilateral involvement is more common than multifocal involvement in the early phase of SARS and MERS [13, 14].
T187 12380-12535 Sentence denotes In our study, the majority of patients showed multifocal involvement in the initial chest CT scan, and this finding is consistent with a recent report [8].
T188 12536-12702 Sentence denotes However, whether this finding is a characteristic feature of the SARS-CoV-2 distinguished from the other two coronaviruses remains to be confirmed by further studies.
T189 12703-12862 Sentence denotes The follow-up CT examination in 52 patients showed that 3 patients who had negative baseline scan, rapidly progressed to with bilateral ground glass opacities.
T190 12863-13025 Sentence denotes Since there is an incubation period after infection with the SARS-CoV-2 [15], a patient may not present any symptoms and imaging abnormalities during this period.
T191 13026-13120 Sentence denotes At present, real-time PCR is used to confirm SARS-CoV-2 infection from respiratory secretions.
T192 13121-13255 Sentence denotes In our study, few patients initially negative for SARS-CoV-2 nucleic acid test had bilateral ground glass opacities in chest CT scans.
T193 13256-13355 Sentence denotes After a few days, patients converted to positive for SARS-CoV-2 nucleic acid test by real-time PCR.
T194 13356-13526 Sentence denotes This points out that patient’s history, clinical manifestations, imaging characteristics, and laboratory tests are all important elements in the diagnosis of the disease.
T195 13527-13558 Sentence denotes Our study had some limitations.
T196 13559-13715 Sentence denotes First of all, we cannot demonstrate any prognostic role for chest CT, because we did not find any correlation between imaging and the course of the disease.
T197 13716-13796 Sentence denotes Also, 52 patients with short-term follow-up chest CT showed disease progression.
T198 13797-14032 Sentence denotes The imaging evaluation of disease progression is not complete, and we will collect more follow-up CT data to observe the evolution and outcome of the disease and provide more imaging information to be correlated with clinical findings.
T199 14034-14044 Sentence denotes Conclusion
T200 14045-14174 Sentence denotes Chest CT detects minor lung lesions in patients at an early stage of disease, demonstrating its utility in guiding the diagnosis.
T201 14175-14413 Sentence denotes In a patient with a history of close contact with a SARS-CoV-2-infected patient, early manifestation of bilateral, multifocal, and peripheral ground glass opacities on a chest CT scan might be a sign of a 2019 novel coronavirus infection.
T202 14414-14498 Sentence denotes Thus, chest CT is suggested as an important tool for SARS-CoV-2 infection diagnosis.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T10 43-52 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1278-1283 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 1285-1290 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T13 1443-1452 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T14 2458-2467 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 3959-3975 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T16 3977-3997 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T17 4008-4023 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T18 4025-4044 Phenotype denotes pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T19 4056-4071 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T20 4536-4549 Phenotype denotes lung diseases http://purl.obolibrary.org/obo/HP_0002088
T21 4573-4584 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T22 4698-4703 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 4708-4713 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T24 5171-5176 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T25 5181-5186 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T26 5588-5593 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T27 5598-5603 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T28 6489-6494 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T29 6499-6504 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T30 7039-7051 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T31 7081-7103 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T32 7113-7150 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T33 7239-7244 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T34 7256-7261 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T35 7302-7309 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T36 7330-7337 Phenotype denotes Myalgia http://purl.obolibrary.org/obo/HP_0003326
T37 7349-7360 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T38 7372-7378 Phenotype denotes Chills http://purl.obolibrary.org/obo/HP_0025143
T39 7388-7396 Phenotype denotes Headache http://purl.obolibrary.org/obo/HP_0002315
T40 7406-7414 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T41 7424-7430 Phenotype denotes Nausea http://purl.obolibrary.org/obo/HP_0002018
T42 8407-8423 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T43 8425-8445 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T44 8468-8483 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T45 8489-8508 Phenotype denotes pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T46 9500-9516 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T47 9526-9546 Phenotype denotes Pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T48 9556-9571 Phenotype denotes Lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T49 9581-9600 Phenotype denotes Pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T50 10346-10351 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T51 10356-10361 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T52 11191-11200 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T53 11396-11412 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T54 11414-11434 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T55 11457-11472 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T56 11478-11497 Phenotype denotes pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T57 11737-11760 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T58 11910-11919 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T59 11988-11997 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

MyTest

Id Subject Object Predicate Lexical cue
32107577-27012512-29177258 976-977 27012512 denotes 2
32107577-30531947-29177259 1148-1149 30531947 denotes 3
32107577-31978945-29177260 1227-1228 31978945 denotes 4
32107577-18195376-29177261 4371-4372 18195376 denotes 7
32107577-20442279-29177262 11762-11764 20442279 denotes 11
32107577-29757717-29177263 12102-12104 29757717 denotes 12
32107577-15018128-29177264 12371-12373 15018128 denotes 13
32107577-26998804-29177265 12375-12377 26998804 denotes 14

2_test

Id Subject Object Predicate Lexical cue
32107577-27012512-29177258 976-977 27012512 denotes 2
32107577-30531947-29177259 1148-1149 30531947 denotes 3
32107577-31978945-29177260 1227-1228 31978945 denotes 4
32107577-18195376-29177261 4371-4372 18195376 denotes 7
32107577-20442279-29177262 11762-11764 20442279 denotes 11
32107577-29757717-29177263 12102-12104 29757717 denotes 12
32107577-15018128-29177264 12371-12373 15018128 denotes 13
32107577-26998804-29177265 12375-12377 26998804 denotes 14