PMC:7080117 / 14038-15192
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 388 | 559-569 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 389 | 592-605 | Species | denotes | Coronaviridae | Tax:11118 |
| 390 | 648-658 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 391 | 674-682 | Species | denotes | SARS-CoV | Tax:694009 |
| 392 | 862-870 | Species | denotes | patients | Tax:9606 |
| 393 | 1053-1063 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 394 | 1097-1110 | Species | denotes | coronaviruses | Tax:11118 |
| 395 | 312-317 | Chemical | denotes | water | MESH:D014867 |
| 396 | 29-39 | Disease | denotes | infections | MESH:D007239 |
| 397 | 356-371 | Disease | denotes | viral pneumonia | |
| 398 | 412-427 | Disease | denotes | viral infection | MESH:D001102 |
| 399 | 434-449 | Disease | denotes | viral pneumonia | |
| 400 | 687-705 | Disease | denotes | MERS-CoV infection | MESH:D018352 |
| 401 | 817-821 | Disease | denotes | MERS | MESH:D018352 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T51 | 197-205 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T52 | 300-305 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T53 | 322-327 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T54 | 916-921 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T55 | 300-305 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T56 | 307-310 | Body_part | denotes | pus | http://purl.obolibrary.org/obo/UBERON_0000177 |
| T57 | 916-921 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T74 | 20-39 | Disease | denotes | viruses’ infections | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T75 | 356-371 | Disease | denotes | viral pneumonia | http://purl.obolibrary.org/obo/MONDO_0006012 |
| T76 | 362-371 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T77 | 412-427 | Disease | denotes | viral infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T78 | 418-427 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T79 | 434-449 | Disease | denotes | viral pneumonia | http://purl.obolibrary.org/obo/MONDO_0006012 |
| T80 | 440-449 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T81 | 559-567 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T82 | 648-656 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T83 | 674-682 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T84 | 696-705 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T85 | 808-812 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T86 | 1053-1061 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T117 | 20-27 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T118 | 93-94 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T119 | 214-216 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T120 | 300-305 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T121 | 300-305 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T122 | 322-327 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T123 | 916-921 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T124 | 967-968 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T125 | 1021-1022 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T9 | 312-317 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 396-408 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
| T2 | 412-427 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infection |
| T3 | 540-552 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T180 | 0-92 | Sentence | denotes | Imaging features of viruses’ infections usually appear as multifocal ground glass opacities. |
| T181 | 93-218 | Sentence | denotes | A previous study identified that ground glass opacities on CT images correspond to pathological diffuse alveolar damage [11]. |
| T182 | 219-328 | Sentence | denotes | Histologically, the opacity of ground glass may be caused by alveoli filled with blood, pus, water, or cells. |
| T183 | 329-428 | Sentence | denotes | The CT imaging features of viral pneumonia are associated with the pathogenesis of viral infection. |
| T184 | 429-558 | Sentence | denotes | Most viral pneumonia shares similar imaging features in the same Viridae family because of similarities in the pathogenesis [12]. |
| T185 | 559-706 | Sentence | denotes | SARS-CoV-2 belongs to the family Coronaviridae, so, as expected, the imaging features of SARS-CoV-2 are similar to SARS-CoV and MERS-CoV infection. |
| T186 | 707-831 | Sentence | denotes | Nonetheless, unilateral involvement is more common than multifocal involvement in the early phase of SARS and MERS [13, 14]. |
| T187 | 832-987 | Sentence | denotes | In our study, the majority of patients showed multifocal involvement in the initial chest CT scan, and this finding is consistent with a recent report [8]. |
| T188 | 988-1154 | Sentence | denotes | However, whether this finding is a characteristic feature of the SARS-CoV-2 distinguished from the other two coronaviruses remains to be confirmed by further studies. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T57 | 189-212 | Phenotype | denotes | diffuse alveolar damage | http://purl.obolibrary.org/obo/HP_0033006 |
| T58 | 362-371 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T59 | 440-449 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32107577-20442279-29177262 | 214-216 | 20442279 | denotes | 11 |
| 32107577-29757717-29177263 | 554-556 | 29757717 | denotes | 12 |
| 32107577-15018128-29177264 | 823-825 | 15018128 | denotes | 13 |
| 32107577-26998804-29177265 | 827-829 | 26998804 | denotes | 14 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32107577-20442279-29177262 | 214-216 | 20442279 | denotes | 11 |
| 32107577-29757717-29177263 | 554-556 | 29757717 | denotes | 12 |
| 32107577-15018128-29177264 | 823-825 | 15018128 | denotes | 13 |
| 32107577-26998804-29177265 | 827-829 | 26998804 | denotes | 14 |