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PMC:7080117 / 10282-12097 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
281 846-854 Species denotes Patients Tax:9606
282 1177-1192 Disease denotes Left upper lobe MESH:D012141
283 1708-1724 Disease denotes Pleural effusion MESH:D010996
284 1764-1779 Disease denotes Lymphadenopathy MESH:D008206
285 1789-1808 Disease denotes Pulmonary emphysema MESH:D011656
288 805-813 Species denotes patients Tax:9606
289 819-829 Species denotes SARS-CoV-2 Tax:2697049
301 45-53 Species denotes patients Tax:9606
302 68-76 Species denotes patients Tax:9606
303 133-141 Species denotes patients Tax:9606
304 284-292 Species denotes patients Tax:9606
305 385-393 Species denotes patients Tax:9606
306 450-458 Species denotes patients Tax:9606
307 757-765 Species denotes patients Tax:9606
308 615-631 Disease denotes Pleural effusion MESH:D010996
309 633-653 Disease denotes pericardial effusion MESH:D010490
310 667-691 Disease denotes thoracic lymphadenopathy MESH:D013896
311 697-716 Disease denotes pulmonary emphysema MESH:D011656

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T38 9-14 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T39 174-178 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T40 596-602 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T41 1177-1192 Body_part denotes Left upper lobe http://purl.org/sig/ont/fma/fma7370
T42 1204-1219 Body_part denotes Left lower lobe http://purl.org/sig/ont/fma/fma7371
T43 1231-1247 Body_part denotes Right upper lobe http://purl.org/sig/ont/fma/fma7333
T44 1259-1276 Body_part denotes Right middle lobe http://purl.org/sig/ont/fma/fma7383
T45 1288-1304 Body_part denotes Right lower lobe http://purl.org/sig/ont/fma/fma7337
T46 1679-1685 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T38 9-14 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T39 174-178 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T40 596-602 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T41 615-631 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T42 1147-1151 Body_part denotes Lobe http://purl.obolibrary.org/obo/UBERON_3010752
T43 1188-1192 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T44 1215-1219 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T45 1243-1247 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T46 1272-1276 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T47 1300-1304 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T48 1679-1685 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T49 1708-1724 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T58 633-653 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T59 676-691 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T60 697-716 Disease denotes pulmonary emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T61 819-827 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 1734-1754 Disease denotes Pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T63 1764-1779 Disease denotes Lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T64 1799-1808 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T89 9-14 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T90 174-178 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T91 174-178 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T92 376-378 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T93 596-602 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T94 615-631 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T95 1085-1088 http://purl.obolibrary.org/obo/CLO_0001382 denotes 4 8
T96 1102-1104 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T97 1193-1195 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T98 1248-1250 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T99 1375-1377 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T100 1489-1491 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T101 1679-1685 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T102 1708-1724 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T116 0-110 Sentence denotes Baseline chest CT showed abnormalities in 69 patients, and 53 (59%) patients had more than two lobes involved.
T117 111-217 Sentence denotes More than half of the patients presented bilateral, multifocal lung lesions, with peripheral distribution.
T118 218-273 Sentence denotes Lesions were inclined to distribute in the lower lobes.
T119 274-430 Sentence denotes Of the 90 patients included, 65 (72%) had ground glass opacification, 12 (13%) had consolidation, and 11 (12%) patients presented with crazy paving pattern.
T120 431-614 Sentence denotes Thirty-three (37%) patients had interlobular thickening, 55 (61%) had combined linear opacities, 7 (8%) showed air bronchogram sign, and 50 (56%) presented adjacent pleura thickening.
T121 615-776 Sentence denotes Pleural effusion, pericardial effusion, cavitation, thoracic lymphadenopathy, and pulmonary emphysema were uncommon imaging findings in these patients (Table 2).
T122 777-845 Sentence denotes Table 2 Imaging findings of patients with SARS-CoV-2 at presentation
T123 846-863 Sentence denotes Patients (n = 90)
T124 864-876 Sentence denotes Distribution
T125 877-910 Sentence denotes   Periphery distribution 46 (51%)
T126 911-943 Sentence denotes   Bilateral involvement 53 (59%)
T127 944-977 Sentence denotes   Multifocal involvement 62 (69%)
T128 978-1007 Sentence denotes   Unifocal involvement 7 (8%)
T129 1008-1032 Sentence denotes Number of lobes involved
T130 1033-1045 Sentence denotes   0 21 (23%)
T131 1046-1058 Sentence denotes   1 12 (13%)
T132 1059-1069 Sentence denotes   2 4 (4%)
T133 1070-1082 Sentence denotes   3 13 (14%)
T134 1083-1093 Sentence denotes   4 8 (9%)
T135 1094-1106 Sentence denotes   5 32 (36%)
T136 1107-1146 Sentence denotes   More than two lobes involved 53 (59%)
T137 1147-1174 Sentence denotes Lobe of lesion distribution
T138 1175-1201 Sentence denotes   Left upper lobe 48 (53%)
T139 1202-1228 Sentence denotes   Left lower lobe 55 (61%)
T140 1229-1256 Sentence denotes   Right upper lobe 48 (53%)
T141 1257-1285 Sentence denotes   Right middle lobe 40 (44%)
T142 1286-1313 Sentence denotes   Right lower lobe 59 (66%)
T143 1314-1346 Sentence denotes   Bilateral upper lobes 40 (44%)
T144 1347-1379 Sentence denotes   Bilateral lower lobes 47 (52%)
T145 1380-1402 Sentence denotes Patterns of the lesion
T146 1403-1440 Sentence denotes   Ground glass opacification 65 (72%)
T147 1441-1465 Sentence denotes   Consolidation 12 (13%)
T148 1466-1497 Sentence denotes   Crazy paving pattern 11 (12%)
T149 1498-1517 Sentence denotes   Cavitation 0 (0%)
T150 1518-1543 Sentence denotes Other signs in the lesion
T151 1544-1585 Sentence denotes   Interlobular septal thickening 33 (37%)
T152 1586-1622 Sentence denotes   Linear opacities combined 55 (61%)
T153 1623-1652 Sentence denotes   Air bronchogram sign 7 (8%)
T154 1653-1667 Sentence denotes Other findings
T155 1668-1705 Sentence denotes   Adjacent pleura thickening 50 (56%)
T156 1706-1731 Sentence denotes   Pleural effusion 4 (4%)
T157 1732-1761 Sentence denotes   Pericardial effusion 1 (1%)
T158 1762-1786 Sentence denotes   Lymphadenopathy 1 (1%)
T159 1787-1815 Sentence denotes   Pulmonary emphysema 0 (0%)

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T42 615-631 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T43 633-653 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T44 676-691 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T45 697-716 Phenotype denotes pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T46 1708-1724 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T47 1734-1754 Phenotype denotes Pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T48 1764-1779 Phenotype denotes Lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T49 1789-1808 Phenotype denotes Pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097