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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 33-41 Species denotes patients Tax:9606
3 47-69 Species denotes 2019 novel coronavirus Tax:2697049
12 130-152 Species denotes 2019 novel coronavirus Tax:2697049
13 154-164 Species denotes SARS-CoV-2 Tax:2697049
14 178-187 Species denotes 2019-nCoV Tax:2697049
15 419-427 Species denotes patients Tax:9606
16 442-452 Species denotes SARS-CoV-2 Tax:2697049
17 106-115 Disease denotes pneumonia MESH:D011014
18 242-250 Disease denotes COVID-19 MESH:C000657245
19 428-436 Disease denotes infected MESH:D007239
29 487-495 Species denotes patients Tax:9606
30 695-701 Species denotes People Tax:9606
31 741-749 Species denotes patients Tax:9606
32 754-757 Species denotes men Tax:9606
33 765-770 Species denotes women Tax:9606
34 836-846 Species denotes SARS-CoV-2 Tax:2697049
35 856-864 Species denotes patients Tax:9606
36 977-985 Species denotes patients Tax:9606
37 523-543 Disease denotes SARS-CoV-2 infection MESH:C000657245
53 1257-1265 Species denotes patients Tax:9606
54 1316-1324 Species denotes patients Tax:9606
55 1390-1398 Species denotes patients Tax:9606
56 1488-1496 Species denotes patients Tax:9606
57 1547-1555 Species denotes patients Tax:9606
58 1960-1968 Species denotes patients Tax:9606
59 1982-1990 Species denotes patients Tax:9606
60 1248-1256 Disease denotes infected MESH:D007239
61 1307-1315 Disease denotes infected MESH:D007239
62 1351-1356 Disease denotes fever MESH:D005334
63 1361-1366 Disease denotes cough MESH:D003371
64 1557-1575 Disease denotes COVID-19 pneumonia MESH:C000657245
65 1808-1824 Disease denotes Pleural effusion MESH:D010996
66 1826-1846 Disease denotes pericardial effusion MESH:D010490
67 1852-1867 Disease denotes lymphadenopathy MESH:D008206
72 2130-2137 Species denotes patient Tax:9606
73 2079-2099 Disease denotes SARS-CoV-2 infection MESH:C000657245
74 2298-2325 Disease denotes novel coronavirus pneumonia MESH:C000657245
75 2469-2487 Disease denotes COVID-19 pneumonia MESH:C000657245
82 2557-2579 Species denotes 2019 novel coronavirus Tax:2697049
83 2581-2591 Species denotes SARS-CoV-2 Tax:2697049
84 2854-2862 Species denotes patients Tax:9606
85 2533-2542 Disease denotes pneumonia MESH:D011014
86 2643-2651 Disease denotes COVID-19 MESH:C000657245
87 3132-3160 Disease denotes novel coronavirus infections MESH:C000657245
107 3162-3172 Species denotes SARS-CoV-2 Tax:2697049
108 3178-3193 Species denotes betacoronavirus Tax:694002
109 3221-3234 Species denotes Coronaviridae Tax:11118
110 3282-3293 Species denotes coronavirus Tax:11118
111 3333-3339 Species denotes humans Tax:9606
112 3493-3538 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
113 3540-3548 Species denotes SARS-CoV Tax:694009
114 3554-3609 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
115 3642-3652 Species denotes SARS-CoV-2 Tax:2697049
116 3682-3695 Species denotes coronaviruses Tax:11118
117 3709-3715 Species denotes humans Tax:9606
118 3730-3738 Species denotes patients Tax:9606
119 3843-3851 Species denotes SARS-CoV Tax:694009
120 3398-3408 Disease denotes infections MESH:D007239
121 3451-3464 Disease denotes cold symptoms MESH:D051271
122 3721-3729 Disease denotes Infected MESH:D007239
123 3768-3773 Disease denotes fever MESH:D005334
124 3775-3780 Disease denotes cough MESH:D003371
125 3856-3875 Disease denotes MERS-CoV infections MESH:D018352
137 3953-3963 Species denotes SARS-CoV-2 Tax:2697049
138 3985-3990 Species denotes human Tax:9606
139 4054-4059 Species denotes child Tax:9606
140 4127-4134 Species denotes patient Tax:9606
141 4172-4189 Species denotes novel coronavirus Tax:2697049
142 4270-4278 Species denotes patients Tax:9606
143 4331-4337 Species denotes people Tax:9606
144 4563-4573 Species denotes SARS-CoV-2 Tax:2697049
145 3933-3942 Disease denotes pneumonia MESH:D011014
146 4284-4304 Disease denotes SARS-CoV-2 infection MESH:C000657245
147 4539-4547 Disease denotes infected MESH:D007239
153 4766-4774 Species denotes patients Tax:9606
154 4839-4847 Species denotes patients Tax:9606
155 4647-4665 Disease denotes lung abnormalities MESH:D008171
156 4780-4800 Disease denotes SARS-CoV-2 infection MESH:C000657245
157 4939-4957 Disease denotes COVID-19 pneumonia MESH:C000657245
162 5264-5272 Species denotes patients Tax:9606
163 5297-5305 Species denotes patients Tax:9606
164 5331-5339 Species denotes patients Tax:9606
165 5367-5387 Disease denotes SARS-CoV-2 infection MESH:C000657245
169 7188-7193 Disease denotes fever MESH:D005334
170 7198-7203 Disease denotes cough MESH:D003371
171 7440-7452 Disease denotes black arrows MESH:D007898
175 7600-7605 Species denotes woman Tax:9606
176 7661-7666 Disease denotes fever MESH:D005334
177 7671-7676 Disease denotes cough MESH:D003371
180 8078-8083 Disease denotes fever MESH:D005334
181 8088-8093 Disease denotes cough MESH:D003371
193 5640-5648 Species denotes patients Tax:9606
194 5742-5748 Species denotes People Tax:9606
195 6072-6079 Species denotes patient Tax:9606
196 6449-6465 Disease denotes pleural effusion MESH:D010996
197 6467-6487 Disease denotes pericardial effusion MESH:D010490
198 6489-6513 Disease denotes thoracic lymphadenopathy MESH:D013896
199 6515-6534 Disease denotes pulmonary emphysema MESH:D011656
200 6546-6561 Disease denotes lymphadenopathy MESH:D008206
201 7026-7039 Disease denotes lung diseases MESH:D008171
202 7049-7061 Disease denotes tuberculosis MESH:D014376
203 7063-7074 Disease denotes lung cancer MESH:D008175
205 8383-8391 Species denotes patients Tax:9606
227 9990-10008 Gene denotes C-reactive protein Gene:1401
228 10010-10014 Gene denotes mg/L Gene:11343
229 9290-9298 Species denotes Patients Tax:9606
230 9308-9315 Species denotes Patient Tax:9606
231 9370-9373 Species denotes Men Tax:9606
232 9385-9390 Species denotes Women Tax:9606
233 9449-9456 Species denotes patient Tax:9606
234 10223-10233 Species denotes SARS-CoV-2 Tax:2697049
235 9440-9448 Disease denotes infected MESH:D007239
236 9529-9541 Disease denotes Hypertension MESH:D006973
237 9553-9561 Disease denotes Diabetes MESH:D003920
238 9571-9593 Disease denotes Cardiovascular disease MESH:D002318
239 9603-9640 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
240 9650-9662 Disease denotes Tuberculosis MESH:D014376
241 9718-9734 Disease denotes symptoms   Fever MESH:D051271
242 9746-9751 Disease denotes Cough MESH:D003371
243 9792-9811 Disease denotes Fatigue weakness 19 MESH:C000657245
244 9820-9827 Disease denotes Myalgia MESH:D063806
245 9878-9886 Disease denotes Headache MESH:D006261
246 9896-9904 Disease denotes Diarrhea MESH:D003967
247 9914-9920 Disease denotes Nausea MESH:D009325
249 9243-9250 Species denotes Patient Tax:9606
263 9118-9136 Gene denotes C-reactive protein Gene:1401
264 8683-8691 Species denotes patients Tax:9606
265 8696-8699 Species denotes men Tax:9606
266 8707-8712 Species denotes women Tax:9606
267 8780-8788 Species denotes patients Tax:9606
268 8821-8829 Species denotes patients Tax:9606
269 8880-8888 Species denotes patients Tax:9606
270 8929-8937 Species denotes patients Tax:9606
271 8955-8963 Species denotes patients Tax:9606
272 9005-9013 Species denotes patients Tax:9606
273 9045-9053 Species denotes patients Tax:9606
274 9093-9101 Species denotes patients Tax:9606
275 9138-9146 Species denotes Patients Tax:9606
281 11128-11136 Species denotes Patients Tax:9606
282 11459-11474 Disease denotes Left upper lobe MESH:D012141
283 11990-12006 Disease denotes Pleural effusion MESH:D010996
284 12046-12061 Disease denotes Lymphadenopathy MESH:D008206
285 12071-12090 Disease denotes Pulmonary emphysema MESH:D011656
288 11087-11095 Species denotes patients Tax:9606
289 11101-11111 Species denotes SARS-CoV-2 Tax:2697049
301 10327-10335 Species denotes patients Tax:9606
302 10350-10358 Species denotes patients Tax:9606
303 10415-10423 Species denotes patients Tax:9606
304 10566-10574 Species denotes patients Tax:9606
305 10667-10675 Species denotes patients Tax:9606
306 10732-10740 Species denotes patients Tax:9606
307 11039-11047 Species denotes patients Tax:9606
308 10897-10913 Disease denotes Pleural effusion MESH:D010996
309 10915-10935 Disease denotes pericardial effusion MESH:D010490
310 10949-10973 Disease denotes thoracic lymphadenopathy MESH:D013896
311 10979-10998 Disease denotes pulmonary emphysema MESH:D011656
313 12480-12488 Species denotes Patients Tax:9606
319 12108-12116 Species denotes patients Tax:9606
320 12180-12188 Species denotes patients Tax:9606
321 12213-12221 Species denotes patients Tax:9606
322 12258-12266 Species denotes patients Tax:9606
323 12313-12321 Species denotes patients Tax:9606
328 12617-12625 Species denotes patients Tax:9606
329 12682-12690 Species denotes patients Tax:9606
330 12716-12726 Species denotes SARS-CoV-2 Tax:2697049
331 12673-12681 Disease denotes infected MESH:D007239
341 12798-12806 Species denotes patients Tax:9606
342 12867-12875 Species denotes patients Tax:9606
343 13007-13014 Species denotes Persons Tax:9606
344 13051-13061 Species denotes SARS-CoV-2 Tax:2697049
345 13194-13202 Species denotes patients Tax:9606
346 12789-12797 Disease denotes Infected MESH:D007239
347 12836-12841 Disease denotes fever MESH:D005334
348 12846-12851 Disease denotes cough MESH:D003371
349 12996-13005 Disease denotes infection MESH:D007239
354 13305-13313 Species denotes patients Tax:9606
355 13328-13338 Species denotes SARS-CoV-2 Tax:2697049
356 13314-13322 Disease denotes infected MESH:D007239
357 13402-13420 Disease denotes lung abnormalities MESH:D008171
366 13649-13657 Species denotes patients Tax:9606
367 13799-13807 Species denotes patients Tax:9606
368 14028-14036 Species denotes patients Tax:9606
369 13670-13690 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
370 13886-13902 Disease denotes Pleural effusion MESH:D010996
371 13904-13924 Disease denotes pericardial effusion MESH:D010490
372 13938-13962 Disease denotes thoracic lymphadenopathy MESH:D013896
373 13968-13987 Disease denotes pulmonary emphysema MESH:D011656
388 14597-14607 Species denotes SARS-CoV-2 Tax:2697049
389 14630-14643 Species denotes Coronaviridae Tax:11118
390 14686-14696 Species denotes SARS-CoV-2 Tax:2697049
391 14712-14720 Species denotes SARS-CoV Tax:694009
392 14900-14908 Species denotes patients Tax:9606
393 15091-15101 Species denotes SARS-CoV-2 Tax:2697049
394 15135-15148 Species denotes coronaviruses Tax:11118
395 14350-14355 Chemical denotes water MESH:D014867
396 14067-14077 Disease denotes infections MESH:D007239
397 14394-14409 Disease denotes viral pneumonia
398 14450-14465 Disease denotes viral infection MESH:D001102
399 14472-14487 Disease denotes viral pneumonia
400 14725-14743 Disease denotes MERS-CoV infection MESH:D018352
401 14855-14859 Disease denotes MERS MESH:D018352
408 15228-15236 Species denotes patients Tax:9606
409 15251-15259 Species denotes patients Tax:9606
410 15414-15424 Species denotes SARS-CoV-2 Tax:2697049
411 15433-15440 Species denotes patient Tax:9606
412 15395-15404 Disease denotes infection MESH:D007239
413 15566-15581 Disease denotes CoV-2 infection MESH:C000657245
419 15629-15637 Species denotes patients Tax:9606
420 15661-15671 Species denotes SARS-CoV-2 Tax:2697049
421 15764-15772 Species denotes patients Tax:9606
422 15799-15809 Species denotes SARS-CoV-2 Tax:2697049
423 15867-15874 Species denotes patient Tax:9606
425 16215-16223 Species denotes patients Tax:9606
432 16574-16582 Species denotes patients Tax:9606
433 16670-16677 Species denotes patient Tax:9606
434 16737-16744 Species denotes patient Tax:9606
435 16717-16736 Disease denotes SARS-CoV-2-infected MESH:C000657245
436 16870-16902 Disease denotes 2019 novel coronavirus infection MESH:C000657245
437 16957-16977 Disease denotes SARS-CoV-2 infection MESH:C000657245
440 17040-17049 Disease denotes Infection MESH:D007239
441 17054-17066 Disease denotes inflammation MESH:D007249
443 17433-17435 Disease denotes DH MESH:D065630

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 897-902 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T2 1088-1092 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T3 1157-1162 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T4 1431-1435 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T5 1734-1740 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T6 1914-1919 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T7 2221-2226 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T8 2436-2441 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T9 3812-3816 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T10 4077-4081 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T11 4551-4556 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T12 4594-4599 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T13 4647-4651 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 5668-5673 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T15 5942-5947 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T16 6430-6436 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T17 6577-6587 Body_part denotes lymph node http://purl.org/sig/ont/fma/fma5034
T18 6613-6617 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T19 7026-7030 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T20 7063-7067 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T21 7243-7248 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T22 7432-7438 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T23 7511-7527 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T24 7713-7718 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T25 8134-8139 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T26 8241-8247 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T27 8411-8416 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T28 8566-8570 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T29 9129-9136 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T30 9162-9179 Body_part denotes white blood cells http://purl.org/sig/ont/fma/fma62852
T31 9174-9179 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T32 9216-9233 Body_part denotes white blood cells http://purl.org/sig/ont/fma/fma62852
T33 9228-9233 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 9763-9769 Body_part denotes Sputum http://purl.org/sig/ont/fma/fma312401
T35 9844-9850 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T36 10001-10008 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T37 10101-10111 Body_part denotes Leucocytes http://purl.org/sig/ont/fma/fma62852
T38 10291-10296 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T39 10456-10460 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T40 10878-10884 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T41 11459-11474 Body_part denotes Left upper lobe http://purl.org/sig/ont/fma/fma7370
T42 11486-11501 Body_part denotes Left lower lobe http://purl.org/sig/ont/fma/fma7371
T43 11513-11529 Body_part denotes Right upper lobe http://purl.org/sig/ont/fma/fma7333
T44 11541-11558 Body_part denotes Right middle lobe http://purl.org/sig/ont/fma/fma7383
T45 11570-11586 Body_part denotes Right lower lobe http://purl.org/sig/ont/fma/fma7337
T46 11961-11967 Body_part denotes pleura http://purl.org/sig/ont/fma/fma9583
T47 12128-12133 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T48 12456-12461 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T49 13382-13387 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T50 13402-13406 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T51 14235-14243 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T52 14338-14343 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T53 14360-14365 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T54 14954-14959 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T55 15730-15735 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T56 16109-16114 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T57 16250-16255 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T58 16535-16540 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T59 16558-16562 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T60 16835-16840 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T61 16910-16915 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 897-902 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1088-1092 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T3 1157-1162 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 1431-1435 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T5 1734-1740 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T6 1808-1824 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T7 1914-1919 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 2221-2226 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 2436-2441 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T10 3812-3816 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T11 4077-4081 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 4551-4556 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 4594-4599 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T14 4647-4651 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 5668-5673 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T16 5942-5947 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T17 6158-6162 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T18 6430-6436 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T19 6449-6465 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T20 6577-6587 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T21 6577-6582 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T22 6852-6859 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T23 7026-7030 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T24 7063-7067 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 7243-7248 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T26 7432-7438 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T27 7523-7527 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T28 7713-7718 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T29 8134-8139 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T30 8241-8247 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T31 8411-8416 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T32 8566-8570 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T33 9168-9173 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T34 9222-9227 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T35 9763-9769 Body_part denotes Sputum http://purl.obolibrary.org/obo/UBERON_0007311
T36 9844-9850 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T37 9930-9935 Body_part denotes Vomit http://purl.obolibrary.org/obo/UBERON_0000172
T38 10291-10296 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T39 10456-10460 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T40 10878-10884 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T41 10897-10913 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T42 11429-11433 Body_part denotes Lobe http://purl.obolibrary.org/obo/UBERON_3010752
T43 11470-11474 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T44 11497-11501 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T45 11525-11529 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T46 11554-11558 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T47 11582-11586 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T48 11961-11967 Body_part denotes pleura http://purl.obolibrary.org/obo/UBERON_0000977
T49 11990-12006 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T50 12128-12133 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T51 12456-12461 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T52 13382-13387 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T53 13402-13406 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T54 13886-13902 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T55 14338-14343 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T56 14345-14348 Body_part denotes pus http://purl.obolibrary.org/obo/UBERON_0000177
T57 14954-14959 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T58 15730-15735 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T59 16109-16114 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T60 16250-16255 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T61 16535-16540 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T62 16558-16562 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T63 16835-16840 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T64 16910-16915 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p24000s3 9118-9119 MPA denotes C

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 70-78 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 106-115 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 154-162 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 242-250 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 442-450 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 523-531 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 534-543 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 836-844 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 1557-1565 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1566-1575 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 1826-1846 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T12 1852-1867 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T13 2079-2087 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 2090-2099 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 2316-2325 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T16 2469-2477 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 2478-2487 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T18 2533-2542 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T19 2581-2589 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 2643-2651 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 3150-3160 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T22 3162-3170 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 3398-3408 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T24 3444-3455 Disease denotes common cold http://purl.obolibrary.org/obo/MONDO_0005709
T25 3493-3526 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T26 3540-3548 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 3642-3650 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 3843-3851 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 3865-3875 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T30 3933-3942 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T31 3953-3961 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 4284-4292 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 4295-4304 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 4563-4571 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 4780-4788 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 4791-4800 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 4939-4947 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 4948-4957 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T39 5367-5375 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 5378-5387 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 6467-6487 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T42 6498-6513 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T43 6515-6534 Disease denotes pulmonary emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T44 6546-6561 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T45 7026-7039 Disease denotes lung diseases http://purl.obolibrary.org/obo/MONDO_0005275
T46 7049-7061 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T47 7063-7074 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T48 7068-7074 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T49 9529-9541 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T50 9553-9561 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T51 9571-9593 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T52 9603-9640 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T53 9623-9640 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T54 9650-9662 Disease denotes Tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T55 9839-9850 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T56 9896-9904 Disease denotes Diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T57 10223-10231 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 10915-10935 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T59 10958-10973 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T60 10979-10998 Disease denotes pulmonary emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T61 11101-11109 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 12016-12036 Disease denotes Pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T63 12046-12061 Disease denotes Lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T64 12081-12090 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T65 12716-12724 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T66 12996-13005 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T67 13051-13059 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T68 13328-13336 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 13670-13678 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T70 13681-13690 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T71 13904-13924 Disease denotes pericardial effusion http://purl.obolibrary.org/obo/MONDO_0001370
T72 13947-13962 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T73 13968-13987 Disease denotes pulmonary emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T74 14058-14077 Disease denotes viruses’ infections http://purl.obolibrary.org/obo/MONDO_0005108
T75 14394-14409 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T76 14400-14409 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T77 14450-14465 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T78 14456-14465 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T79 14472-14487 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T80 14478-14487 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T81 14597-14605 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T82 14686-14694 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 14712-14720 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 14734-14743 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T85 14846-14850 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T86 15091-15099 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T87 15395-15404 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T88 15414-15422 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T89 15561-15569 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 15572-15581 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T91 15661-15669 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T92 15799-15807 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T93 16717-16725 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 16870-16902 Disease denotes 2019 novel coronavirus infection http://purl.obolibrary.org/obo/MONDO_0100096
T95 16893-16902 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T96 16957-16965 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T97 16968-16977 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T98 17040-17049 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T99 17054-17066 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 655-656 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 805-807 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T3 897-902 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T4 1088-1092 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T5 1088-1092 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T6 1157-1162 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T7 1270-1271 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1431-1435 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T9 1431-1435 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T10 1678-1680 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T11 1734-1740 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T12 1808-1824 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T13 1914-1919 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T14 2057-2060 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T15 2214-2219 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T16 2221-2226 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T17 2436-2441 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T18 2521-2522 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2717-2718 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 3004-3005 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 3080-3081 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 3110-3113 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T23 3176-3177 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 3333-3339 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T25 3709-3715 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T26 3812-3816 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T27 3812-3816 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T28 3881-3882 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T29 3911-3912 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 3985-3990 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 4040-4044 http://purl.obolibrary.org/obo/CLO_0001550 denotes a 10
T32 4077-4081 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T33 4077-4081 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T34 4343-4344 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 4551-4556 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 4587-4592 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T37 4594-4599 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T38 4647-4651 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T39 4647-4651 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T40 4836-4838 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T41 5668-5673 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T42 5702-5703 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 5942-5947 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T44 5996-5997 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 6033-6040 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T46 6091-6092 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 6125-6126 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T48 6430-6436 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T49 6449-6465 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T50 6577-6587 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node
T51 6852-6859 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T52 7026-7030 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T53 7026-7030 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T54 7063-7067 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T55 7063-7067 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T56 7116-7117 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T57 7216-7217 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 7219-7220 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T59 7243-7248 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T60 7432-7438 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T61 7584-7587 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2 A
T62 7689-7690 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 7713-7718 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T64 7811-7812 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T65 7992-7993 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T66 8015-8016 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 8040-8041 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 8098-8100 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T69 8107-8108 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 8110-8111 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T71 8134-8139 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T72 8241-8247 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T73 8402-8403 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 8411-8416 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T75 8534-8535 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 8566-8570 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T77 8566-8570 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T78 8747-8749 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T79 8834-8835 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 9168-9179 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood cells
T81 9222-9233 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood cells
T82 9361-9363 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T83 9518-9520 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T84 9781-9783 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T85 9983-9987 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T86 10090-10092 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T87 10101-10111 http://purl.obolibrary.org/obo/CL_0000738 denotes Leucocytes
T88 10248-10252 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T89 10291-10296 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T90 10456-10460 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T91 10456-10460 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T92 10658-10660 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T93 10878-10884 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T94 10897-10913 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T95 11367-11370 http://purl.obolibrary.org/obo/CLO_0001382 denotes 4 8
T96 11384-11386 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T97 11475-11477 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T98 11530-11532 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T99 11657-11659 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T100 11771-11773 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T101 11961-11967 http://purl.obolibrary.org/obo/UBERON_0000977 denotes pleura
T102 11990-12006 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T103 12126-12127 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 12128-12133 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T105 12375-12378 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T106 12456-12461 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T107 12468-12470 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T108 12494-12496 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T109 12630-12631 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 12727-12730 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T111 13020-13021 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 13225-13226 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 13382-13387 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T114 13402-13406 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T115 13402-13406 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T116 13886-13902 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T117 14058-14065 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T118 14131-14132 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T119 14252-14254 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T120 14338-14343 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T121 14338-14343 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T122 14360-14365 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T123 14954-14959 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T124 15005-15006 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 15059-15060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T126 15225-15227 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T127 15431-15432 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T128 15685-15689 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T129 15730-15735 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T130 15752-15753 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 15823-15827 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T132 15951-15956 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T133 16109-16114 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T134 16212-16214 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T135 16250-16255 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T136 16535-16540 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T137 16558-16562 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T138 16558-16562 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T139 16668-16669 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 16683-16684 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T141 16715-16716 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 16833-16834 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 16835-16840 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T144 16858-16859 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T145 16868-16869 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T146 16910-16915 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T147 17320-17322 http://purl.obolibrary.org/obo/CLO_0054040 denotes XX
T148 17327-17328 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 17875-17878 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 4574-4586 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T2 4582-4586 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T3 5787-5789 Chemical denotes GE http://purl.obolibrary.org/obo/CHEBI_73801
T4 5818-5820 Chemical denotes WI http://purl.obolibrary.org/obo/CHEBI_141448
T5 9129-9136 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 10001-10008 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 10235-10247 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T8 10243-10247 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T9 14350-14355 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T10 15672-15684 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T11 15680-15684 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T12 15810-15822 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T13 15818-15822 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T14 17297-17299 Chemical denotes LL http://purl.obolibrary.org/obo/CHEBI_73531
T15 17433-17435 Chemical denotes DH http://purl.obolibrary.org/obo/CHEBI_73451
T16 17445-17447 Chemical denotes WG http://purl.obolibrary.org/obo/CHEBI_74870
T17 17457-17459 Chemical denotes TH http://purl.obolibrary.org/obo/CHEBI_73663
T18 17461-17463 Chemical denotes YD http://purl.obolibrary.org/obo/CHEBI_141455
T19 17475-17477 Chemical denotes QG http://purl.obolibrary.org/obo/CHEBI_73848

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 14434-14446 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T2 14450-14465 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T3 14578-14590 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T4 15599-15609 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T5 17054-17066 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-80 Sentence denotes Imaging and clinical features of patients with 2019 novel coronavirus SARS-CoV-2
T2 82-90 Sentence denotes Abstract
T3 91-101 Sentence denotes Background
T4 102-251 Sentence denotes The pneumonia caused by the 2019 novel coronavirus (SARS-CoV-2, also called 2019-nCoV) recently break out in Wuhan, China, and was named as COVID-19.
T5 252-349 Sentence denotes With the spread of the disease, similar cases have also been confirmed in other regions of China.
T6 350-473 Sentence denotes We aimed to report the imaging and clinical characteristics of these patients infected with SARS-CoV-2 in Guangzhou, China.
T7 475-482 Sentence denotes Methods
T8 483-714 Sentence denotes All patients with laboratory-identified SARS-CoV-2 infection by real-time polymerase chain reaction (PCR) were collected between January 23, 2020, and February 4, 2020, in a designated hospital (Guangzhou Eighth People’s Hospital).
T9 715-818 Sentence denotes This analysis included 90 patients (39 men and 51 women; median age, 50 years (age range, 18–86 years).
T10 819-928 Sentence denotes All the included SARS-CoV-2-infected patients underwent non-contrast enhanced chest computed tomography (CT).
T11 929-1101 Sentence denotes We analyzed the clinical characteristics of the patients, as well as the distribution characteristics, pattern, morphology, and accompanying manifestations of lung lesions.
T12 1102-1221 Sentence denotes In addition, after 1–6 days (mean 3.5 days), follow-up chest CT images were evaluated to assess radiological evolution.
T13 1223-1231 Sentence denotes Findings
T14 1232-1367 Sentence denotes The majority of infected patients had a history of exposure in Wuhan or to infected patients and mostly presented with fever and cough.
T15 1368-1530 Sentence denotes More than half of the patients presented bilateral, multifocal lung lesions, with peripheral distribution, and 53 (59%) patients had more than two lobes involved.
T16 1531-1807 Sentence denotes Of all included patients, COVID-19 pneumonia presented with ground glass opacities in 65 (72%), consolidation in 12 (13%), crazy paving pattern in 11 (12%), interlobular thickening in 33 (37%), adjacent pleura thickening in 50 (56%), and linear opacities combined in 55 (61%).
T17 1808-1891 Sentence denotes Pleural effusion, pericardial effusion, and lymphadenopathy were uncommon findings.
T18 1892-2066 Sentence denotes In addition, baseline chest CT did not show any abnormalities in 21 patients (23%), but 3 patients presented bilateral ground glass opacities on the second CT after 3–4 days.
T19 2068-2078 Sentence denotes Conclusion
T20 2079-2220 Sentence denotes SARS-CoV-2 infection can be confirmed based on the patient’s history, clinical manifestations, imaging characteristics, and laboratory tests.
T21 2221-2326 Sentence denotes Chest CT examination plays an important role in the initial diagnosis of the novel coronavirus pneumonia.
T22 2327-2488 Sentence denotes Multiple patchy ground glass opacities in bilateral multiple lobular with periphery distribution are typical chest CT imaging features of the COVID-19 pneumonia.
T23 2490-2502 Sentence denotes Introduction
T24 2503-2626 Sentence denotes In December 2019, a series of pneumonia caused by the 2019 novel coronavirus (SARS-CoV-2) break out in Wuhan, Hubei, China.
T25 2627-2691 Sentence denotes Since then, the COVID-19 confirmed cases are increasing rapidly.
T26 2692-2863 Sentence denotes As of February 10, 2020, a total of 40,265 confirmed cases have been reported in China, with another 23,589 suspected cases, 909 fatal cases, and 3501 discharged patients.
T27 2864-2945 Sentence denotes Moreover, more than 300 similar cases have been identified in other 24 countries.
T28 2946-3161 Sentence denotes On December 30, 2019, WHO announced the event constituted a Public Health Emergency of International Concern (PHEIC), indicating that a big threat to global health has been posed by the novel coronavirus infections.
T29 3162-3265 Sentence denotes SARS-CoV-2 is a betacoronavirus that belongs to the family Coronaviridae and the order Nidovirales [1].
T30 3266-3358 Sentence denotes Up to date, six coronavirus species have been identified to infect humans and cause disease.
T31 3359-3469 Sentence denotes Among them, 229E, OC43, NL63, and HKU1 infections are frequently mild, mostly caused common cold symptoms [2].
T32 3470-3641 Sentence denotes The other two species, severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV), might cause fatal illness [3].
T33 3642-3720 Sentence denotes SARS-CoV-2 is the seventh member of the coronaviruses that infects humans [4].
T34 3721-3880 Sentence denotes Infected patients predominantly presented with fever, cough, and radiological ground glass lung opacities, which resemble SARS-CoV and MERS-CoV infections [5].
T35 3881-4023 Sentence denotes A recent publication reported a familial cluster of pneumonia linked to SARS-CoV-2, which indicated the human transmission of the disease [6].
T36 4024-4122 Sentence denotes In this family, a 10-year-old child had ground glass lung opacification, but no clinical symptoms.
T37 4123-4235 Sentence denotes The patient was confirmed to be affected by this novel coronavirus by real-time polymerase chain reaction (PCR).
T38 4236-4322 Sentence denotes These findings indicate that some patients with SARS-CoV-2 infection are asymptomatic.
T39 4323-4593 Sentence denotes If some people have a clear history of exposure, regardless of clinical symptoms, or if they present suggestive clinical manifestations, regardless of history of exposure, it is necessary to confirm whether they are infected by chest CT or SARS-CoV-2 nucleic acid tests.
T40 4594-4696 Sentence denotes Chest CT plays an important role in timely detecting lung abnormalities, allowing for early treatment.
T41 4697-4848 Sentence denotes We aimed at describing clinical and CT imaging characteristics of 90 patients with SARS-CoV-2 infection and early follow-up appearances of 52 patients.
T42 4849-4983 Sentence denotes We hope our findings will provide useful information for medical imagers to recognize the COVID-19 pneumonia and assess its evolution.
T43 4985-5006 Sentence denotes Materials and methods
T44 5008-5016 Sentence denotes Patients
T45 5017-5106 Sentence denotes The study was conducted in accordance with the principles of the Declaration of Helsinki.
T46 5107-5326 Sentence denotes Our institutional review board waived written informed consent for this retrospective study that evaluated de-identified data involving no potential risk to patients and no link between the patients and the researchers.
T47 5327-5467 Sentence denotes All patients with laboratory-identified SARS-CoV-2 infection by real-time PCR were collected between January 23, 2020, and February 4, 2020.
T48 5468-5594 Sentence denotes The clinical data analyzed were as follows: age, sex, exposure history, comorbid conditions, symptoms, and laboratory results.
T49 5596-5626 Sentence denotes Image acquisition and analysis
T50 5627-5761 Sentence denotes All included patients underwent baseline chest non-contrast enhanced CT in a designated hospital (Guangzhou Eighth People’s Hospital).
T51 5762-5902 Sentence denotes An Optima CT680 scanner (GE Medical Systems, Milwaukee, WI) was used and set at 210 mA and 120 kV, with the minimum slice thickness of 1 mm.
T52 5903-6016 Sentence denotes All images were analyzed by two senior chest radiologists with 15–20 years of experience, in a consistent manner.
T53 6017-6536 Sentence denotes Image analysis, focused on the lesion features of each patient, included (a) distribution characteristics, (b) number of lobes involved, (c) lobe of lesion distribution, (d) patterns of the lesion (e.g., ground glass opacification, consolidation, cavitation, crazy paving pattern), (e) other signs in the lesion (e.g., interlobular septal thickening, air bronchogram sign), and (f) other findings (e.g., adjacent pleura thickening, pleural effusion, pericardial effusion, thoracic lymphadenopathy, pulmonary emphysema).
T54 6537-6988 Sentence denotes Thoracic lymphadenopathy was defined as lymph node size of ≥ 10 mm in short-axis; ground glass opacification was defined as hazy opacity that did not obscure underlying bronchial and vascular margins (Figs. 1 and 2); consolidation was defined as opacification with obscuration of bronchial structures and pulmonary vessels [7]; crazy paving pattern was defined as ground glass opacification with associated interlobular septal thickening [8] (Fig. 3).
T55 6989-7108 Sentence denotes The alterations caused by underlying lung diseases (such as tuberculosis, lung cancer) were not included in this study.
T56 7109-7454 Sentence denotes Fig. 1 A 49-year-old man with history of recent travel to Wuhan presented with fever and cough for 6 days. a, b Non-contrast enhanced chest CT showed multiple peripheral patchy ground glass opacities in bilateral multiple lobular and subsegmental with obscure boundary (white arrows), as well as thickening of the adjacent pleura (black arrows).
T57 7455-7578 Sentence denotes Besides, CT scan also demonstrated consolidation in the right lower lobe and air bronchogram sign in the lesion (red arrow)
T58 7579-7984 Sentence denotes Fig. 2 A 49-year-old woman with history of recent travel to Wuhan, presented with fever and cough for 8 days. a Non-contrast enhanced chest CT demonstrated multiple ground glass opacification in the both lower lobes (white arrows). b After 4 days, the follow-up CT scan showed enlarged lesions and increased density of the lesions compared with previous images, indicating disease progression (red arrows)
T59 7985-8248 Sentence denotes Fig. 3 A 62-year-old man with a history of exposure to a market in Guangzhou, presented with fever and cough for 11 days. a, b Non-contrast enhanced chest CT showed multiple ground glass opacification in the both lower lobes and thickening of the adjacent pleura.
T60 8249-8372 Sentence denotes The interlobular septal thickening in regions of ground glass opacification, representing crazy paving pattern (red arrows)
T61 8373-8451 Sentence denotes Fifty-two patients underwent a second chest CT after 1–6 days (mean 3.5 days).
T62 8452-8554 Sentence denotes These images were evaluated for lesions’ evolution by two senior radiologists, in a consistent manner.
T63 8555-8650 Sentence denotes Changes in lung lesions were divided as no change, disease resolution, and disease progression.
T64 8652-8659 Sentence denotes Results
T65 8660-8760 Sentence denotes This study included 90 patients (39 men and 51 women; median age, 50 years (age range, 18–86 years).
T66 8761-8815 Sentence denotes Table 1 summarizes patients’ clinical characteristics.
T67 8816-8938 Sentence denotes Most patients had a history of exposure in Wuhan or to infected patients; exposure history was unknown in 4 (4%) patients.
T68 8939-8995 Sentence denotes The majority of patients presented with fever and cough.
T69 8996-9032 Sentence denotes Six (7%) patients were asymptomatic.
T70 9033-9073 Sentence denotes Half of the patients hold comorbidities.
T71 9074-9137 Sentence denotes Thirty-eight (42%) patients showed elevated C-reactive protein.
T72 9138-9234 Sentence denotes Patients with decreased white blood cells were more than those with increased white blood cells.
T73 9235-9289 Sentence denotes Table 1 Patient characteristics and laboratory results
T74 9290-9307 Sentence denotes Patients (n = 90)
T75 9308-9328 Sentence denotes Patient demographics
T76 9329-9367 Sentence denotes   Median age, years (range) 50 (18–86)
T77 9368-9382 Sentence denotes   Men 39 (43%)
T78 9383-9399 Sentence denotes   Women 51 (57%)
T79 9400-9416 Sentence denotes Exposure history
T80 9417-9465 Sentence denotes   Exposure to Wuhan or infected patient 86 (96%)
T81 9466-9491 Sentence denotes   Unknown exposure 4 (4%)
T82 9492-9511 Sentence denotes Comorbid conditions
T83 9512-9526 Sentence denotes   Any 45 (50%)
T84 9527-9550 Sentence denotes   Hypertension 17 (19%)
T85 9551-9568 Sentence denotes   Diabetes 5 (6%)
T86 9569-9600 Sentence denotes   Cardiovascular disease 3 (3%)
T87 9601-9647 Sentence denotes   Chronic obstructive pulmonary disease 1 (1%)
T88 9648-9669 Sentence denotes   Tuberculosis 2 (2%)
T89 9670-9689 Sentence denotes   Malignancy 2 (2%)
T90 9690-9707 Sentence denotes   Others 15 (17%)
T91 9708-9726 Sentence denotes Signs and symptoms
T92 9727-9743 Sentence denotes   Fever 70 (78%)
T93 9744-9760 Sentence denotes   Cough 57 (63%)
T94 9761-9789 Sentence denotes   Sputum production 11 (12%)
T95 9790-9817 Sentence denotes   Fatigue weakness 19 (21%)
T96 9818-9836 Sentence denotes   Myalgia 25 (28%)
T97 9837-9859 Sentence denotes   Sore throat 23 (26%)
T98 9860-9875 Sentence denotes   Chills 6 (7%)
T99 9876-9893 Sentence denotes   Headache 4 (4%)
T100 9894-9911 Sentence denotes   Diarrhea 5 (6%)
T101 9912-9927 Sentence denotes   Nausea 5 (6%)
T102 9928-9942 Sentence denotes   Vomit 2 (2%)
T103 9943-9971 Sentence denotes   No obvious symptoms 6 (7%)
T104 9972-9987 Sentence denotes Laboratory test
T105 9988-10034 Sentence denotes   C-reactive protein (mg/L; normal range 0–10)
T106 10035-10057 Sentence denotes     Increased 38 (42%)
T107 10058-10071 Sentence denotes     Decreased
T108 10072-10089 Sentence denotes     Normal 0 (0%)
T109 10090-10098 Sentence denotes 52 (58%)
T110 10099-10142 Sentence denotes   Leucocytes (×109/L, normal range 3.5–9.5)
T111 10143-10163 Sentence denotes     Increased 3 (3%)
T112 10164-10186 Sentence denotes     Decreased 19 (21%)
T113 10187-10206 Sentence denotes     Normal 68 (76%)
T114 10207-10255 Sentence denotes   Positive for (SARS-CoV-2) nucleic acid test by
T115 10256-10281 Sentence denotes   Real-time PCR 90 (100%)
T116 10282-10392 Sentence denotes Baseline chest CT showed abnormalities in 69 patients, and 53 (59%) patients had more than two lobes involved.
T117 10393-10499 Sentence denotes More than half of the patients presented bilateral, multifocal lung lesions, with peripheral distribution.
T118 10500-10555 Sentence denotes Lesions were inclined to distribute in the lower lobes.
T119 10556-10712 Sentence denotes Of the 90 patients included, 65 (72%) had ground glass opacification, 12 (13%) had consolidation, and 11 (12%) patients presented with crazy paving pattern.
T120 10713-10896 Sentence denotes Thirty-three (37%) patients had interlobular thickening, 55 (61%) had combined linear opacities, 7 (8%) showed air bronchogram sign, and 50 (56%) presented adjacent pleura thickening.
T121 10897-11058 Sentence denotes Pleural effusion, pericardial effusion, cavitation, thoracic lymphadenopathy, and pulmonary emphysema were uncommon imaging findings in these patients (Table 2).
T122 11059-11127 Sentence denotes Table 2 Imaging findings of patients with SARS-CoV-2 at presentation
T123 11128-11145 Sentence denotes Patients (n = 90)
T124 11146-11158 Sentence denotes Distribution
T125 11159-11192 Sentence denotes   Periphery distribution 46 (51%)
T126 11193-11225 Sentence denotes   Bilateral involvement 53 (59%)
T127 11226-11259 Sentence denotes   Multifocal involvement 62 (69%)
T128 11260-11289 Sentence denotes   Unifocal involvement 7 (8%)
T129 11290-11314 Sentence denotes Number of lobes involved
T130 11315-11327 Sentence denotes   0 21 (23%)
T131 11328-11340 Sentence denotes   1 12 (13%)
T132 11341-11351 Sentence denotes   2 4 (4%)
T133 11352-11364 Sentence denotes   3 13 (14%)
T134 11365-11375 Sentence denotes   4 8 (9%)
T135 11376-11388 Sentence denotes   5 32 (36%)
T136 11389-11428 Sentence denotes   More than two lobes involved 53 (59%)
T137 11429-11456 Sentence denotes Lobe of lesion distribution
T138 11457-11483 Sentence denotes   Left upper lobe 48 (53%)
T139 11484-11510 Sentence denotes   Left lower lobe 55 (61%)
T140 11511-11538 Sentence denotes   Right upper lobe 48 (53%)
T141 11539-11567 Sentence denotes   Right middle lobe 40 (44%)
T142 11568-11595 Sentence denotes   Right lower lobe 59 (66%)
T143 11596-11628 Sentence denotes   Bilateral upper lobes 40 (44%)
T144 11629-11661 Sentence denotes   Bilateral lower lobes 47 (52%)
T145 11662-11684 Sentence denotes Patterns of the lesion
T146 11685-11722 Sentence denotes   Ground glass opacification 65 (72%)
T147 11723-11747 Sentence denotes   Consolidation 12 (13%)
T148 11748-11779 Sentence denotes   Crazy paving pattern 11 (12%)
T149 11780-11799 Sentence denotes   Cavitation 0 (0%)
T150 11800-11825 Sentence denotes Other signs in the lesion
T151 11826-11867 Sentence denotes   Interlobular septal thickening 33 (37%)
T152 11868-11904 Sentence denotes   Linear opacities combined 55 (61%)
T153 11905-11934 Sentence denotes   Air bronchogram sign 7 (8%)
T154 11935-11949 Sentence denotes Other findings
T155 11950-11987 Sentence denotes   Adjacent pleura thickening 50 (56%)
T156 11988-12013 Sentence denotes   Pleural effusion 4 (4%)
T157 12014-12043 Sentence denotes   Pericardial effusion 1 (1%)
T158 12044-12068 Sentence denotes   Lymphadenopathy 1 (1%)
T159 12069-12097 Sentence denotes   Pulmonary emphysema 0 (0%)
T160 12098-12164 Sentence denotes Fifty-two patients repeated a chest CT examination after 1–6 days.
T161 12165-12307 Sentence denotes Among them, 10 patients (19%) had no changes, 4 patients (8%) had disease resolution, and 38 patients (73%) had disease progression (Table 3).
T162 12308-12424 Sentence denotes In 3 patients (6%) with baseline negative scan, follow-up CT after 3–4 days showed bilateral ground glass opacities.
T163 12425-12479 Sentence denotes Table 3 Image change on repeat chest CT in 52 patients
T164 12480-12497 Sentence denotes Patients (n = 52)
T165 12498-12516 Sentence denotes No change 10 (19%)
T166 12517-12542 Sentence denotes Disease resolution 4 (8%)
T167 12543-12571 Sentence denotes Disease progression 38 (73%)
T168 12573-12583 Sentence denotes Discussion
T169 12584-12788 Sentence denotes Considering that the majority of patients had a clear history of exposure in Wuhan or to infected patients, our data confirmed that SARS-CoV-2 has the ability for person-to-person transmission [6, 9, 10].
T170 12789-12852 Sentence denotes Infected patients predominantly presented with fever and cough.
T171 12853-12899 Sentence denotes Notably, some patients (7%) were asymptomatic.
T172 12900-13006 Sentence denotes These findings indicated that the absence of clinical symptoms cannot rule out the diagnosis of infection.
T173 13007-13182 Sentence denotes Persons with a clear history of exposure to SARS-CoV-2, regardless of clinical symptoms, should be considered for medical observation, home isolation, and further examination.
T174 13183-13289 Sentence denotes Similarly, patients with symptoms without a known history of exposure should undergo further examinations.
T175 13290-13381 Sentence denotes The numbers of patients infected with SARS-CoV-2 is rapidly increasing nationwide in China.
T176 13382-13596 Sentence denotes Chest CT can detect lung abnormalities with high sensitivity, which is quite helpful for early diagnosis of the disease that can trigger early treatment, which facilitates the containment of this emergency disease.
T177 13597-13767 Sentence denotes Our study showed some common CT imaging features in patients affected by SARS-CoV-2 pneumonia: bilateral, multifocal ground glass opacities, with peripheral distribution.
T178 13768-13885 Sentence denotes Of note, more than half of the patients had multilobar involvement and lesions were more frequent in the lower lobes.
T179 13886-14037 Sentence denotes Pleural effusion, pericardial effusion, cavitation, thoracic lymphadenopathy, and pulmonary emphysema were uncommon imaging findings in these patients.
T180 14038-14130 Sentence denotes Imaging features of viruses’ infections usually appear as multifocal ground glass opacities.
T181 14131-14256 Sentence denotes A previous study identified that ground glass opacities on CT images correspond to pathological diffuse alveolar damage [11].
T182 14257-14366 Sentence denotes Histologically, the opacity of ground glass may be caused by alveoli filled with blood, pus, water, or cells.
T183 14367-14466 Sentence denotes The CT imaging features of viral pneumonia are associated with the pathogenesis of viral infection.
T184 14467-14596 Sentence denotes Most viral pneumonia shares similar imaging features in the same Viridae family because of similarities in the pathogenesis [12].
T185 14597-14744 Sentence denotes SARS-CoV-2 belongs to the family Coronaviridae, so, as expected, the imaging features of SARS-CoV-2 are similar to SARS-CoV and MERS-CoV infection.
T186 14745-14869 Sentence denotes Nonetheless, unilateral involvement is more common than multifocal involvement in the early phase of SARS and MERS [13, 14].
T187 14870-15025 Sentence denotes In our study, the majority of patients showed multifocal involvement in the initial chest CT scan, and this finding is consistent with a recent report [8].
T188 15026-15192 Sentence denotes However, whether this finding is a characteristic feature of the SARS-CoV-2 distinguished from the other two coronaviruses remains to be confirmed by further studies.
T189 15193-15352 Sentence denotes The follow-up CT examination in 52 patients showed that 3 patients who had negative baseline scan, rapidly progressed to with bilateral ground glass opacities.
T190 15353-15515 Sentence denotes Since there is an incubation period after infection with the SARS-CoV-2 [15], a patient may not present any symptoms and imaging abnormalities during this period.
T191 15516-15610 Sentence denotes At present, real-time PCR is used to confirm SARS-CoV-2 infection from respiratory secretions.
T192 15611-15745 Sentence denotes In our study, few patients initially negative for SARS-CoV-2 nucleic acid test had bilateral ground glass opacities in chest CT scans.
T193 15746-15845 Sentence denotes After a few days, patients converted to positive for SARS-CoV-2 nucleic acid test by real-time PCR.
T194 15846-16016 Sentence denotes This points out that patient’s history, clinical manifestations, imaging characteristics, and laboratory tests are all important elements in the diagnosis of the disease.
T195 16017-16048 Sentence denotes Our study had some limitations.
T196 16049-16205 Sentence denotes First of all, we cannot demonstrate any prognostic role for chest CT, because we did not find any correlation between imaging and the course of the disease.
T197 16206-16286 Sentence denotes Also, 52 patients with short-term follow-up chest CT showed disease progression.
T198 16287-16522 Sentence denotes The imaging evaluation of disease progression is not complete, and we will collect more follow-up CT data to observe the evolution and outcome of the disease and provide more imaging information to be correlated with clinical findings.
T199 16524-16534 Sentence denotes Conclusion
T200 16535-16664 Sentence denotes Chest CT detects minor lung lesions in patients at an early stage of disease, demonstrating its utility in guiding the diagnosis.
T201 16665-16903 Sentence denotes In a patient with a history of close contact with a SARS-CoV-2-infected patient, early manifestation of bilateral, multifocal, and peripheral ground glass opacities on a chest CT scan might be a sign of a 2019 novel coronavirus infection.
T202 16904-16988 Sentence denotes Thus, chest CT is suggested as an important tool for SARS-CoV-2 infection diagnosis.
T203 16990-17066 Sentence denotes This article is part of the Topical Collection on Infection and inflammation
T204 17067-17083 Sentence denotes Publisher’s note
T205 17084-17202 Sentence denotes Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
T206 17203-17260 Sentence denotes Xi Xu and Chengcheng Yu contributed equally to this work.
T207 17262-17284 Sentence denotes Authors’ contributions
T208 17285-17535 Sentence denotes JL, XT, and LL designed the study; XX was a major contributor in writing the manuscript; CY and JQ collected the imaging and clinical data; LZ, SJ, DH, BC, ZZ, WG, ZL, RJ, TH, YD, LLin, and QG revised it critically for important intellectual content.
T209 17536-17586 Sentence denotes All authors have read and approved the manuscript.
T210 17588-17621 Sentence denotes Compliance with ethical standards
T211 17623-17643 Sentence denotes Conflict of interest
T212 17644-17704 Sentence denotes The authors declare that they have no conflicts of interest.
T213 17706-17744 Sentence denotes Ethics approval/consent to participate
T214 17745-17893 Sentence denotes The study was conducted in accordance with the principles of the Declaration of Helsinki, and Institutional Review Board approval has been obtained.
T215 17894-17963 Sentence denotes The written informed consent for this retrospective study was waived.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 106-115 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 1351-1356 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 1361-1366 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 1566-1575 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 1808-1824 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T6 1826-1846 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T7 1852-1867 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T8 2316-2325 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T9 2478-2487 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 2533-2542 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 3768-3773 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 3775-3780 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T13 3933-3942 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T14 4948-4957 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 6449-6465 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T16 6467-6487 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T17 6498-6513 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T18 6515-6534 Phenotype denotes pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T19 6546-6561 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T20 7026-7039 Phenotype denotes lung diseases http://purl.obolibrary.org/obo/HP_0002088
T21 7063-7074 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T22 7188-7193 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 7198-7203 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T24 7661-7666 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T25 7671-7676 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T26 8078-8083 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T27 8088-8093 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T28 8979-8984 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T29 8989-8994 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T30 9529-9541 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T31 9571-9593 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T32 9603-9640 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T33 9729-9734 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T34 9746-9751 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T35 9792-9799 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T36 9820-9827 Phenotype denotes Myalgia http://purl.obolibrary.org/obo/HP_0003326
T37 9839-9850 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T38 9862-9868 Phenotype denotes Chills http://purl.obolibrary.org/obo/HP_0025143
T39 9878-9886 Phenotype denotes Headache http://purl.obolibrary.org/obo/HP_0002315
T40 9896-9904 Phenotype denotes Diarrhea http://purl.obolibrary.org/obo/HP_0002014
T41 9914-9920 Phenotype denotes Nausea http://purl.obolibrary.org/obo/HP_0002018
T42 10897-10913 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T43 10915-10935 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T44 10958-10973 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T45 10979-10998 Phenotype denotes pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T46 11990-12006 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T47 12016-12036 Phenotype denotes Pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T48 12046-12061 Phenotype denotes Lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T49 12071-12090 Phenotype denotes Pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T50 12836-12841 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T51 12846-12851 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T52 13681-13690 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T53 13886-13902 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T54 13904-13924 Phenotype denotes pericardial effusion http://purl.obolibrary.org/obo/HP_0001698
T55 13947-13962 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T56 13968-13987 Phenotype denotes pulmonary emphysema http://purl.obolibrary.org/obo/HP_0002097
T57 14227-14250 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T58 14400-14409 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T59 14478-14487 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

MyTest

Id Subject Object Predicate Lexical cue
32107577-27012512-29177258 3466-3467 27012512 denotes 2
32107577-30531947-29177259 3638-3639 30531947 denotes 3
32107577-31978945-29177260 3717-3718 31978945 denotes 4
32107577-18195376-29177261 6861-6862 18195376 denotes 7
32107577-20442279-29177262 14252-14254 20442279 denotes 11
32107577-29757717-29177263 14592-14594 29757717 denotes 12
32107577-15018128-29177264 14861-14863 15018128 denotes 13
32107577-26998804-29177265 14865-14867 26998804 denotes 14

2_test

Id Subject Object Predicate Lexical cue
32107577-27012512-29177258 3466-3467 27012512 denotes 2
32107577-30531947-29177259 3638-3639 30531947 denotes 3
32107577-31978945-29177260 3717-3718 31978945 denotes 4
32107577-18195376-29177261 6861-6862 18195376 denotes 7
32107577-20442279-29177262 14252-14254 20442279 denotes 11
32107577-29757717-29177263 14592-14594 29757717 denotes 12
32107577-15018128-29177264 14861-14863 15018128 denotes 13
32107577-26998804-29177265 14865-14867 26998804 denotes 14