PMC:7080035 / 8126-9569
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T61 | 322-327 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T62 | 431-435 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T63 | 588-593 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T64 | 666-671 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T65 | 870-881 | Body_part | denotes | lymph nodes | http://purl.org/sig/ont/fma/fma5034 |
| T66 | 870-875 | Body_part | denotes | lymph | http://purl.org/sig/ont/fma/fma9671 |
| T67 | 889-900 | Body_part | denotes | mediastinum | http://purl.org/sig/ont/fma/fma9826 |
| T68 | 1138-1143 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T69 | 1358-1363 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T70 | 1390-1401 | Body_part | denotes | lymph nodes | http://purl.org/sig/ont/fma/fma5034 |
| T71 | 1390-1395 | Body_part | denotes | lymph | http://purl.org/sig/ont/fma/fma9671 |
| T72 | 1409-1420 | Body_part | denotes | mediastinum | http://purl.org/sig/ont/fma/fma9826 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T51 | 322-327 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T52 | 431-435 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T53 | 436-440 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T54 | 666-671 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T55 | 870-881 | Body_part | denotes | lymph nodes | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T56 | 870-875 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T57 | 889-900 | Body_part | denotes | mediastinum | http://purl.obolibrary.org/obo/UBERON_0003728 |
| T58 | 1138-1143 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T59 | 1390-1401 | Body_part | denotes | lymph nodes | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T60 | 1390-1395 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T61 | 1409-1420 | Body_part | denotes | mediastinum | http://purl.obolibrary.org/obo/UBERON_0003728 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T33 | 1043-1051 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T99 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T100 | 2-4 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T101 | 254-255 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T102 | 322-327 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T103 | 396-397 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T104 | 431-435 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T105 | 431-435 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T106 | 442-443 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T107 | 588-593 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T108 | 626-627 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T109 | 666-671 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T110 | 738-739 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T111 | 870-881 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph nodes |
| T112 | 952-954 | http://purl.obolibrary.org/obo/CLO_0001387 | denotes | 4c |
| T113 | 1126-1127 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T114 | 1138-1143 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T115 | 1230-1231 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T116 | 1358-1363 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T117 | 1390-1401 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph nodes |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T38 | 463-466 | Chemical | denotes | PET | http://purl.obolibrary.org/obo/CHEBI_131701 |
| T39 | 1054-1066 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T40 | 1062-1066 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T41 | 1182-1191 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T34 | 91-96 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T35 | 123-129 | Phenotype | denotes | chills | http://purl.obolibrary.org/obo/HP_0025143 |
| T36 | 131-140 | Phenotype | denotes | dry cough | http://purl.obolibrary.org/obo/HP_0031246 |
| T37 | 142-149 | Phenotype | denotes | myalgia | http://purl.obolibrary.org/obo/HP_0003326 |
| T38 | 155-162 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T73 | 0-163 | Sentence | denotes | A 48-year-old woman working in the Wuhan Union Hospital presented with an 8-day history of fever (37–38 °C) accompanied by chills, dry cough, myalgia, and fatigue. |
| T74 | 164-253 | Sentence | denotes | WBC count was within the reference range, but she had increased hsCRP levels (12.2 mg/L). |
| T75 | 254-321 | Sentence | denotes | A search for known respiratory pathogens yielded negative findings. |
| T76 | 322-441 | Sentence | denotes | Chest CT imaging (January 15, 2020, Fig. 4d) led to the identification of a blurry shadow in the right lower lung lobe. |
| T77 | 442-637 | Sentence | denotes | A subsequent 18F-FDG PET/CT scan (January 20, 2020) revealed the presence of peripheral FDG-avid GGOs with interlobular septal thickening in both lungs (SUVmax range 3.7–9.3; Fig. 4a, b, arrows). |
| T78 | 638-831 | Sentence | denotes | When compared with previous chest CT results, there was evidence of disease progression as shown by a higher number of lesions, which were also characterized by an increased extent and density. |
| T79 | 832-964 | Sentence | denotes | There were also multiple FDG-positive lymph nodes in the mediastinum and right hilar region (SUVmax range 3.8–5.5; Fig. 4c, arrows). |
| T80 | 965-1125 | Sentence | denotes | Real-time fluorescent polymerase chain reaction (RT-PCR) for the detection of SARS-CoV-2 nucleic acid yielded negative findings in two independent measurements. |
| T81 | 1126-1281 | Sentence | denotes | A follow-up chest CT (February 1, 2020) performed after antiviral and anti-infective treatment revealed a significant improvement in the picture (Fig. 4d). |
| T82 | 1282-1443 | Sentence | denotes | Fig. 4 Peripheral FDG-avid GGOs with interlobular septal thickening in both lungs and multiple FDG-positive lymph nodes in the mediastinum and right hilar region |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 196 | 14-19 | Species | denotes | woman | Tax:9606 |
| 197 | 1043-1053 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 198 | 273-284 | Species | denotes | respiratory | Tax:12814 |
| 199 | 455-462 | Chemical | denotes | 18F-FDG | MESH:D019788 |
| 200 | 91-96 | Disease | denotes | fever | MESH:D005334 |
| 201 | 131-140 | Disease | denotes | dry cough | MESH:D003371 |
| 202 | 142-149 | Disease | denotes | myalgia | MESH:D063806 |
| 203 | 155-162 | Disease | denotes | fatigue | MESH:D005221 |