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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 822-824 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T2 980-982 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T3 1352-1354 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T9 180-186 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T10 213-217 Body_part denotes Back http://purl.org/sig/ont/fma/fma25056
T11 396-407 Body_part denotes Lymphocytes http://purl.org/sig/ont/fma/fma62863
T12 701-705 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T13 869-880 Body_part denotes mediastinum http://purl.org/sig/ont/fma/fma9826
T14 911-922 Body_part denotes mediastinum http://purl.org/sig/ont/fma/fma9826
T15 948-959 Body_part denotes mediastinum http://purl.org/sig/ont/fma/fma9826
T16 1226-1229 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T17 1290-1306 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T18 1302-1306 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T19 1343-1350 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T20 1356-1366 Body_part denotes lymph node http://purl.org/sig/ont/fma/fma5034
T21 1373-1389 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T22 1396-1413 Body_part denotes right middle lobe http://purl.org/sig/ont/fma/fma7383
T23 1420-1436 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T24 1443-1458 Body_part denotes left upper lobe http://purl.org/sig/ont/fma/fma7370
T25 1465-1480 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 180-186 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T9 701-705 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 869-880 Body_part denotes mediastinum http://purl.obolibrary.org/obo/UBERON_0003728
T11 911-922 Body_part denotes mediastinum http://purl.obolibrary.org/obo/UBERON_0003728
T12 948-959 Body_part denotes mediastinum http://purl.obolibrary.org/obo/UBERON_0003728
T13 1296-1301 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T14 1356-1366 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T15 1356-1361 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T16 1385-1389 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T17 1409-1413 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T18 1432-1436 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T19 1454-1458 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T20 1476-1480 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T14 71-79 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 175-186 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T16 822-824 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T17 980-982 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T18 1109-1130 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T19 1132-1152 Disease denotes Chlamydia pneumoniae http://purl.obolibrary.org/obo/MONDO_0025598
T20 1265-1275 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T21 1352-1354 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T28 99-102 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 4
T29 147-149 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T30 701-705 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T31 701-705 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T32 1188-1193 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T33 1209-1210 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T34 1211-1216 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 1296-1301 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T36 1302-1306 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T37 1356-1366 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T9 36-39 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701
T10 107-110 Chemical denotes Man http://purl.obolibrary.org/obo/CHEBI_37684
T11 111-114 Chemical denotes Man http://purl.obolibrary.org/obo/CHEBI_37684
T12 597-600 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701
T13 646-649 Chemical denotes LLL http://purl.obolibrary.org/obo/CHEBI_74541
T14 678-681 Chemical denotes LLL http://purl.obolibrary.org/obo/CHEBI_74541
T15 696-699 Chemical denotes LLL http://purl.obolibrary.org/obo/CHEBI_74541
T16 822-824 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T18 980-982 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T20 1343-1350 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T21 1352-1354 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T23 1460-1463 Chemical denotes LLL http://purl.obolibrary.org/obo/CHEBI_74541

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 168-173 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T10 175-186 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T11 187-192 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T12 194-201 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T13 203-212 Phenotype denotes dizziness http://purl.obolibrary.org/obo/HP_0002321
T14 213-222 Phenotype denotes Back pain http://purl.obolibrary.org/obo/HP_0003418
T15 224-233 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T16 234-239 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T17 248-257 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T18 259-266 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T19 272-279 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T20 1120-1130 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T21 1142-1152 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 1529-1535 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T5 1529-1535 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T24 0-79 Sentence denotes Table 1 General characteristics and PET/CT findings of four cases with COVID-19
T25 80-102 Sentence denotes Patient number 1 2 3 4
T26 103-126 Sentence denotes Sex Man Man Woman Woman
T27 127-149 Sentence denotes Age, years 57 56 61 48
T28 150-279 Sentence denotes Clinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue
T29 280-323 Sentence denotes History of staying in Wuhan Yes Yes Yes Yes
T30 324-395 Sentence denotes WBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal
T31 396-463 Sentence denotes Lymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal
T32 464-532 Sentence denotes HsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2
T33 533-596 Sentence denotes Respiratory pathogens* Negative Negative Not available Negative
T34 597-700 Sentence denotes PET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)
T35 701-797 Sentence denotes Lung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening
T36 798-821 Sentence denotes SUVmax 4.6 7.9 12.2 9.3
T37 822-979 Sentence denotes LN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region
T38 980-1001 Sentence denotes LN SUVmax – 7 5.4 5.5
T39 1002-1052 Sentence denotes Concomitant diseases** Absent Absent Absent Absent
T40 1053-1108 Sentence denotes *The following respiratory pathogens were investigated:
T41 1109-1229 Sentence denotes Mycoplasma pneumoniae, Chlamydia pneumoniae, adenovirus, respiratory syncytial virus, and Coxsackie B-virus specific IgM
T42 1230-1284 Sentence denotes **Including malignancies and other infectious diseases
T43 1285-1541 Sentence denotes WBC, white blood cell; hsCRP, high-sensitivity C-reactive protein; LN, lymph node; RUL, right upper lobe; RML, right middle lobe; RLL, right lower lobe; LUL, left upper lobe; LLL, left lower lobe; GGO, ground-glass opacities; SUV, standardized uptake value

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
73 641-684 Gene denotes RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3
74 80-87 Species denotes Patient Tax:9606
75 115-120 Species denotes Woman Tax:9606
76 121-126 Species denotes Woman Tax:9606
77 533-544 Species denotes Respiratory Tax:12814
78 168-173 Disease denotes Fever MESH:D005334
79 175-192 Disease denotes sore throat Fever MESH:D010608
80 194-201 Disease denotes fatigue MESH:D005221
81 203-222 Disease denotes dizziness Back pain MESH:D004244
82 224-239 Disease denotes dry cough Fever MESH:D003371
83 248-257 Disease denotes dry cough MESH:D003371
84 259-266 Disease denotes myalgia MESH:D063806
85 272-279 Disease denotes fatigue MESH:D005221
87 71-79 Disease denotes COVID-19 MESH:C000657245
93 1109-1130 Species denotes Mycoplasma pneumoniae Tax:2104
94 1132-1152 Species denotes Chlamydia pneumoniae Tax:83558
95 1154-1164 Species denotes adenovirus Tax:10508
96 1166-1193 Species denotes respiratory syncytial virus Tax:12814
97 1068-1079 Species denotes respiratory Tax:12814
100 1242-1254 Disease denotes malignancies MESH:D009369
101 1265-1284 Disease denotes infectious diseases MESH:D003141
103 1332-1350 Gene denotes C-reactive protein Gene:1401