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PMC:7080035 / 1301-2424 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 482-485 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T6 901-906 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T7 946-951 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 901-906 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T6 946-951 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T8 21-40 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T9 91-99 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 325-333 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 373-381 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T14 51-52 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 283-295 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T16 447-451 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4, 5
T17 756-772 http://www.ebi.ac.uk/efo/EFO_0000808 denotes anatomical sites
T18 901-906 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T19 901-906 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T20 923-928 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T21 946-951 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 498-502 Chemical denotes gold http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 390-395 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 397-402 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 404-423 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T5 425-432 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T6 438-445 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T14 0-167 Sentence denotes An outbreak of acute respiratory disease caused by a novel coronavirus of zoonotic origin (SARS-CoV-2) occurred during December 2019 in Wuhan, Hubei province of China.
T15 168-269 Sentence denotes Additional cases have been subsequently identified both in other parts of China and worldwide [1, 2].
T16 270-338 Sentence denotes World Health Organization officially names the disease COVID-19 [3].
T17 339-453 Sentence denotes Common clinical manifestations of COVID-19 include fever, cough, shortness of breath, myalgia, and fatigue [4, 5].
T18 454-567 Sentence denotes Although detection of viral RNA remains the gold standard for diagnosis, false-negative results are not uncommon.
T19 568-797 Sentence denotes The possible reasons may include the lack of standard operation procedures (SOPs) and validation across different laboratories for viral identification, different viral loads at different anatomical sites and high mutation rates.
T20 798-1123 Sentence denotes Consequently, clinical diagnosis is generally based on exposure history, clinical symptoms, results of blood and biochemical tests, and findings on chest computed tomography (CT)—which typically consist of ground-glass opacities (GGOs) or bilateral pulmonary consolidations in multiple lobular and sub-segmental areas [4, 6].

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
49 53-70 Species denotes novel coronavirus Tax:2697049
50 91-101 Species denotes SARS-CoV-2 Tax:2697049
51 15-40 Disease denotes acute respiratory disease MESH:D012120
52 74-82 Disease denotes zoonotic MESH:D015047
53 325-333 Disease denotes COVID-19 MESH:C000657245
54 373-381 Disease denotes COVID-19 MESH:C000657245
55 390-395 Disease denotes fever MESH:D005334
56 397-402 Disease denotes cough MESH:D003371
57 404-423 Disease denotes shortness of breath MESH:D004417
58 425-432 Disease denotes myalgia MESH:D063806
59 438-445 Disease denotes fatigue MESH:D005221