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PMC:7080035 / 10073-11260 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T73 173-188 Body_part denotes pulmonary lobes http://purl.org/sig/ont/fma/fma7311
T74 289-304 Body_part denotes lung parenchyma http://purl.org/sig/ont/fma/fma27360
T75 353-357 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T62 289-304 Body_part denotes lung parenchyma http://purl.obolibrary.org/obo/UBERON_0008946
T63 289-293 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T64 294-304 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T65 353-357 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 353-366 Disease denotes lung diseases http://purl.obolibrary.org/obo/MONDO_0005275
T38 372-378 Disease denotes tumors http://purl.obolibrary.org/obo/MONDO_0005070
T39 473-481 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 492-502 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T41 633-642 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T42 667-675 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T43 676-686 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T44 720-735 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T45 933-941 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 952-965 Disease denotes lymphadenitis http://purl.obolibrary.org/obo/MONDO_0002052
T47 1156-1164 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T122 227-228 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T123 258-259 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 289-293 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T125 289-293 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T126 353-357 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T127 353-357 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T128 512-513 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 643-648 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T130 1011-1016 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T131 1017-1025 http://purl.obolibrary.org/obo/NCBITaxon_9443 denotes primates
T132 1165-1168 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T43 234-240 Chemical denotes tracer http://purl.obolibrary.org/obo/CHEBI_35204
T44 440-446 Chemical denotes tracer http://purl.obolibrary.org/obo/CHEBI_35204
T45 753-756 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T39 353-366 Phenotype denotes lung diseases http://purl.obolibrary.org/obo/HP_0002088
T40 482-502 Phenotype denotes pulmonary infections http://purl.obolibrary.org/obo/HP_0006532
T41 720-735 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T42 952-965 Phenotype denotes lymphadenitis http://purl.obolibrary.org/obo/HP_0002840

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T10 241-247 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T11 241-247 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake
T12 447-453 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T13 447-453 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake
T14 801-807 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T15 801-807 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake
T16 1179-1186 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T87 0-189 Sentence denotes In accordance with previously published observations [5, 6], our cases were characterized by the presence of peripheral GGOs and/or consolidative opacities in more than two pulmonary lobes.
T88 190-248 Sentence denotes Notably, all of these lesions showed a high tracer uptake.
T89 249-430 Sentence denotes Although a bilateral involvement of the lung parenchyma can be observed in several benign and malignant lung diseases [7], tumors presenting as GGOs are unlikely to be FDG-avid [8].
T90 431-657 Sentence denotes The high tracer uptake that characterized COVID-19 pulmonary infections reflects a significant inflammatory burden, similar to that elicited by the Middle East respiratory syndrome or the H1N1 pandemic influenza virus [9, 10].
T91 658-831 Sentence denotes Although COVID-19 infections do not seem to be accompanied by lymphadenopathy [6], our 18F-FDG PET/CT findings revealed an increased nodal FDG uptake in three of four cases.
T92 832-1050 Sentence denotes Although no obvious nodal enlargement was evident, our imaging data indicate for the first time that COVID-19 may cause lymphadenitis—in line with previous data obtained from non-human primates exposed to MERS-CoV [9].
T93 1051-1187 Sentence denotes Another interesting finding is that no disseminated lesions were evident in our patients—suggesting that COVID-19 has pulmonary tropism.

2_test

Id Subject Object Predicate Lexical cue
32088847-31524673-29170378 368-369 31524673 denotes 7
32088847-29473946-29170379 427-428 29473946 denotes 8
32088847-26573211-29170380 650-651 26573211 denotes 9
32088847-22911695-29170381 653-655 22911695 denotes 10
32088847-26573211-29170382 1047-1048 26573211 denotes 9

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
240 852-857 Gene denotes nodal Gene:4838
241 791-796 Gene denotes nodal Gene:4838
242 619-623 Species denotes H1N1 Tax:114727
243 633-648 Species denotes influenza virus Tax:11308
244 1011-1016 Species denotes human Tax:9606
245 1037-1045 Species denotes MERS-CoV Tax:1335626
246 1131-1139 Species denotes patients Tax:9606
247 745-752 Chemical denotes 18F-FDG MESH:D019788
248 797-800 Chemical denotes FDG MESH:D019788
249 343-366 Disease denotes malignant lung diseases MESH:D008171
250 372-378 Disease denotes tumors MESH:D009369
251 473-481 Disease denotes COVID-19 MESH:C000657245
252 482-502 Disease denotes pulmonary infections MESH:D012141
253 579-611 Disease denotes Middle East respiratory syndrome MESH:D018352
254 667-675 Disease denotes COVID-19 MESH:C000657245
255 676-686 Disease denotes infections MESH:D007239
256 720-735 Disease denotes lymphadenopathy MESH:D008206
257 933-941 Disease denotes COVID-19 MESH:C000657245
258 952-965 Disease denotes lymphadenitis MESH:D008199
259 1156-1164 Disease denotes COVID-19 MESH:C000657245

MyTest

Id Subject Object Predicate Lexical cue
32088847-31524673-29170378 368-369 31524673 denotes 7
32088847-29473946-29170379 427-428 29473946 denotes 8
32088847-26573211-29170380 650-651 26573211 denotes 9
32088847-22911695-29170381 653-655 22911695 denotes 10
32088847-26573211-29170382 1047-1048 26573211 denotes 9