PMC:7079563 / 9206-10842
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
223 | 5-10 | Species | denotes | Human | Tax:9606 |
261 | 25-30 | Species | denotes | Human | Tax:9606 |
262 | 31-44 | Species | denotes | coronaviruses | Tax:11118 |
263 | 46-50 | Species | denotes | CoVs | Tax:11118 |
264 | 267-272 | Species | denotes | human | Tax:9606 |
265 | 273-277 | Species | denotes | CoVs | Tax:11118 |
266 | 285-298 | Species | denotes | coronaviruses | Tax:11118 |
267 | 300-309 | Species | denotes | HCoV-229E | Tax:11137 |
268 | 314-323 | Species | denotes | HCoV-NL63 | Tax:277944 |
269 | 333-348 | Species | denotes | β-coronaviruses | Tax:694002 |
270 | 350-359 | Species | denotes | HCoV-OC43 | Tax:31631 |
271 | 364-373 | Species | denotes | HCoV-HKU1 | Tax:290028 |
272 | 541-548 | Species | denotes | infants | Tax:9606 |
273 | 550-558 | Species | denotes | children | Tax:9606 |
274 | 596-600 | Species | denotes | CoVs | Tax:11118 |
275 | 654-699 | Species | denotes | Severe acute respiratory syndrome coronavirus | Tax:694009 |
276 | 701-709 | Species | denotes | SARS-CoV | Tax:694009 |
277 | 875-930 | Species | denotes | Middle-East respiratory syndrome coronavirus (MERS-CoV) | Tax:1335626 |
278 | 1041-1058 | Species | denotes | novel coronavirus | Tax:2697049 |
279 | 1060-1069 | Species | denotes | 2019-nCoV | Tax:2697049 |
280 | 1104-1107 | Species | denotes | CoV | Tax:11118 |
281 | 1176-1184 | Species | denotes | SARS-CoV | Tax:694009 |
282 | 1195-1203 | Species | denotes | MERS-CoV | Tax:1335626 |
283 | 1248-1257 | Species | denotes | 2019-nCoV | Tax:2697049 |
284 | 1339-1348 | Species | denotes | 2019-nCoV | Tax:2697049 |
285 | 1421-1432 | Species | denotes | SARS-CoV (2 | Tax:2697049 |
286 | 1440-1448 | Species | denotes | MERS-CoV | Tax:1335626 |
287 | 1603-1612 | Species | denotes | 2019-nCoV | Tax:2697049 |
288 | 95-138 | Disease | denotes | hepatic and central nervous system diseases | MESH:D002493 |
289 | 140-149 | Disease | denotes | Infection | MESH:D007239 |
290 | 237-242 | Disease | denotes | death | MESH:D003643 |
291 | 421-446 | Disease | denotes | upper respiratory disease | MESH:D012141 |
292 | 456-467 | Disease | denotes | common cold | MESH:D003139 |
293 | 527-537 | Disease | denotes | infections | MESH:D007239 |
294 | 619-639 | Disease | denotes | respiratory diseases | MESH:D012140 |
295 | 850-856 | Disease | denotes | deaths | MESH:D003643 |
296 | 968-976 | Disease | denotes | infected | MESH:D007239 |
297 | 991-997 | Disease | denotes | deaths | MESH:D003643 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 107-129 | Body_part | denotes | central nervous system | http://purl.org/sig/ont/fma/fma55675 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 107-129 | Body_part | denotes | central nervous system | http://purl.obolibrary.org/obo/UBERON_0001017 |
T2 | 115-129 | Body_part | denotes | nervous system | http://purl.obolibrary.org/obo/UBERON_0001016 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T29 | 107-138 | Disease | denotes | central nervous system diseases | http://purl.obolibrary.org/obo/MONDO_0002602 |
T30 | 140-149 | Disease | denotes | Infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T31 | 427-446 | Disease | denotes | respiratory disease | http://purl.obolibrary.org/obo/MONDO_0005087 |
T32 | 456-467 | Disease | denotes | common cold | http://purl.obolibrary.org/obo/MONDO_0005709 |
T33 | 527-540 | Disease | denotes | infections in | http://purl.obolibrary.org/obo/MONDO_0005550 |
T34 | 619-639 | Disease | denotes | respiratory diseases | http://purl.obolibrary.org/obo/MONDO_0005087 |
T35 | 654-687 | Disease | denotes | Severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T36 | 701-709 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T37 | 1176-1184 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T38 | 1421-1429 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T47 | 5-10 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T48 | 25-30 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
T49 | 107-129 | http://purl.obolibrary.org/obo/UBERON_0001017 | denotes | central nervous system |
T50 | 107-129 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | central nervous system |
T51 | 107-129 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | central nervous system |
T52 | 267-272 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T53 | 505-506 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T54 | 858-861 | http://purl.obolibrary.org/obo/CLO_0050884 | denotes | Ten |
T55 | 941-943 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
T56 | 1125-1126 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T57 | 1329-1334 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T74 | 0-24 | Sentence | denotes | 2.1 Human coronaviruses |
T75 | 25-139 | Sentence | denotes | Human coronaviruses (CoVs) could cause respiratory, gastrointestinal, hepatic and central nervous system diseases. |
T76 | 140-250 | Sentence | denotes | Infection outcomes vary from mild, self-limiting disease, to more severe manifestations and even death [1,11]. |
T77 | 251-640 | Sentence | denotes | Among the seven human CoVs, two α-coronaviruses (HCoV-229E and HCoV-NL63) and two β-coronaviruses (HCoV-OC43 and HCoV-HKU1) were thought to cause only mild self-limiting upper respiratory disease, such as common cold in immunocompetent hosts, except for a few cases of severe infections in infants, children and seniors [12,13]; the other three CoVs could cause fatal respiratory diseases. |
T78 | 641-857 | Sentence | denotes | In 2002, the Severe acute respiratory syndrome coronavirus (SARS-CoV) emerged in Guangdong province, China, spreading to 37 countries, and its subsequent global epidemic was associated with 8096 cases and 774 deaths. |
T79 | 858-1012 | Sentence | denotes | Ten years later, Middle-East respiratory syndrome coronavirus (MERS-CoV) spread to 27 countries, causing 2494 infected cases and 858 deaths worldwide [1]. |
T80 | 1013-1214 | Sentence | denotes | And the recently identified novel coronavirus (2019-nCoV), was the third highly pathogenic CoV discovered, with a mortality of 2% which is much lower than that of SARS-CoV (10%) and MERS-CoV (37%) [6]. |
T81 | 1215-1478 | Sentence | denotes | However, the transmissibility of 2019-nCoV is higher, the mean R0 (R0 is used to estimate the transmissibility of virus) of 2019-nCoV ranged from 3.3 to 5.5, and it appeared (slightly) higher than those of SARS-CoV (2–5) and MERS-CoV (2.7–3.9) [[14], [15], [16]]. |
T82 | 1479-1636 | Sentence | denotes | Measures on ‘entry, exit and travel’ screening and restrictions are likely to reduce the effective R0, which should benefit 2019-nCoV control and prevention. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T14 | 107-138 | Phenotype | denotes | central nervous system diseases | http://purl.obolibrary.org/obo/HP_0002011 |
T15 | 520-537 | Phenotype | denotes | severe infections | http://purl.obolibrary.org/obo/HP_0032169 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32087334-30531947-69694990 | 244-245 | 30531947 | denotes | 1 |
32087334-24217413-69694991 | 246-248 | 24217413 | denotes | 11 |
32087334-27012512-69694992 | 572-574 | 27012512 | denotes | 12 |
32087334-27743750-69694993 | 575-577 | 27743750 | denotes | 13 |
32087334-30531947-69694994 | 1009-1010 | 30531947 | denotes | 1 |
32087334-12766207-69694995 | 1461-1463 | 12766207 | denotes | 14 |
32087334-15353409-69694996 | 1467-1469 | 15353409 | denotes | 15 |
32087334-29846148-69694997 | 1473-1475 | 29846148 | denotes | 16 |