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PMC:7079563 / 10890-11910 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
329 1003-1012 Gene denotes cytokines
330 69-77 Species denotes SARS-CoV Tax:694009
331 82-90 Species denotes MERS-CoV Tax:1335626
332 97-105 Species denotes patients Tax:9606
333 216-224 Species denotes patients Tax:9606
334 458-467 Species denotes 2019-nCoV Tax:2697049
335 468-476 Species denotes patients Tax:9606
336 551-559 Species denotes MERS-CoV Tax:1335626
337 563-571 Species denotes SARS-CoV Tax:694009
338 799-807 Species denotes patients Tax:9606
339 923-931 Species denotes SARS-CoV Tax:694009
340 936-944 Species denotes MERS-CoV Tax:1335626
341 25-44 Disease denotes 2019-nCoV infection MESH:C000657245
342 114-119 Disease denotes fever MESH:D005334
343 121-130 Disease denotes dry cough MESH:D003371
344 132-139 Disease denotes dyspnea MESH:D004417
345 230-249 Disease denotes 2019-nCoV infection MESH:C000657245
346 335-346 Disease denotes sore throat MESH:D010608
347 527-535 Disease denotes diarrhea MESH:D003967
348 588-607 Disease denotes 2019-nCoV infection MESH:C000657245
349 636-671 Disease denotes acute respiratory distress syndrome MESH:D012128
350 673-685 Disease denotes septic shock MESH:D012772
351 687-705 Disease denotes metabolic acidosis MESH:D000138
352 711-719 Disease denotes bleeding MESH:D006470
353 724-747 Disease denotes coagulation dysfunction MESH:D001778
354 784-798 Disease denotes critically ill MESH:D016638
355 833-838 Disease denotes fever MESH:D005334
356 894-899 Disease denotes fever MESH:D005334
357 946-966 Disease denotes 2019-nCoV infections MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 181-186 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 340-346 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T4 397-420 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T5 488-498 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T6 1003-1012 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 181-186 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 340-346 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T5 397-420 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T6 403-420 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p22323s16 974-1012 MPA denotes production of high levels of cytokines

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 25-44 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T42 35-44 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T43 69-77 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 230-249 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T45 240-249 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 335-346 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T47 527-535 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T48 563-571 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 588-607 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T50 598-607 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T51 636-671 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T52 642-671 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T53 687-705 Disease denotes metabolic acidosis http://purl.obolibrary.org/obo/MONDO_0000440
T54 697-705 Disease denotes acidosis http://purl.obolibrary.org/obo/MONDO_0006022
T55 923-931 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 946-966 Disease denotes 2019-nCoV infections http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T58 181-186 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T59 369-374 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T60 397-420 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T61 488-498 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T62 488-498 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 724-735 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T84 0-91 Sentence denotes The clinical symptoms of 2019-nCoV infection are similar to those of SARS-CoV and MERS-CoV.
T85 92-206 Sentence denotes Most patients present fever, dry cough, dyspnea, and bilateral ground-glass opacities on chest CT scans [4,17,18].
T86 207-428 Sentence denotes However, patients with 2019-nCoV infection rarely have obvious upper respiratory signs and symptoms (such as snot, sneezing, or sore throat), indicating that the virus primarily infects the lower respiratory tract [4,17].
T87 429-577 Sentence denotes In addition, about 20–25% of 2019-nCoV patients experience intestinal symptoms and signs (such as diarrhea), similarly to MERS-CoV or SARS-CoV [17].
T88 578-748 Sentence denotes In severe 2019-nCoV infection cases, the symptoms include acute respiratory distress syndrome, septic shock, metabolic acidosis, and bleeding and coagulation dysfunction.
T89 749-904 Sentence denotes It is worth noting that severe and critically ill patients may have moderate to low fever during the course of the disease, even without obvious fever [3].
T90 905-1020 Sentence denotes Furthermore, like SARS-CoV and MERS-CoV, 2019-nCoV infections induce production of high levels of cytokines [2,17].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T16 114-119 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 121-130 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T18 132-139 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T19 335-346 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T20 527-535 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T21 642-662 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T22 680-685 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T23 687-705 Phenotype denotes metabolic acidosis http://purl.obolibrary.org/obo/HP_0001942
T24 833-838 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T25 894-899 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32087334-31986261-69694998 197-198 31986261 denotes 4
32087334-31986264-69694999 199-201 31986264 denotes 17
32087334-32007143-69695000 202-204 32007143 denotes 18
32087334-31986261-69695001 422-423 31986261 denotes 4
32087334-31986264-69695002 424-426 31986264 denotes 17
32087334-31986264-69695003 573-575 31986264 denotes 17
32087334-31978945-69695004 1014-1015 31978945 denotes 2
32087334-31986264-69695005 1016-1018 31986264 denotes 17