> top > docs > PMC:7078827 > annotations

PMC:7078827 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 47-72 Disease denotes novel coronavirus disease MESH:C000657245
3 79-87 Disease denotes COVID-19 MESH:C000657245
8 252-276 Disease denotes coronavirus disease-2019 MESH:C000657245
9 278-286 Disease denotes COVID-19 MESH:C000657245
10 499-507 Disease denotes COVID-19 MESH:C000657245
11 615-623 Disease denotes COVID-19 MESH:C000657245
17 991-1008 Species denotes novel coronavirus Tax:2697049
18 1083-1091 Species denotes SARS-CoV Tax:694009
19 868-877 Disease denotes pneumonia MESH:D011014
20 1155-1180 Disease denotes novel coronavirus disease MESH:C000657245
21 1187-1195 Disease denotes COVID-19 MESH:C000657245
23 1236-1244 Disease denotes COVID-19 MESH:C000657245
25 1516-1524 Disease denotes COVID-19 MESH:C000657245
27 1733-1737 Disease denotes died MESH:D003643
30 2014-2022 Disease denotes COVID-19 MESH:C000657245
31 2214-2222 Disease denotes COVID-19 MESH:C000657245
39 2690-2705 Species denotes new coronavirus Tax:2697049
40 2793-2801 Disease denotes COVID-19 MESH:C000657245
41 2850-2859 Disease denotes pneumonia MESH:D011014
42 2888-2893 Disease denotes death MESH:D003643
43 2940-2962 Disease denotes respiratory infections MESH:D012141
44 2967-2977 Disease denotes pneumonias MESH:D011014
45 2998-3003 Disease denotes death MESH:D003643
49 3238-3244 Species denotes people Tax:9606
50 3215-3223 Disease denotes COVID-19 MESH:C000657245
51 3224-3233 Disease denotes infection MESH:D007239
53 3710-3719 Disease denotes infection MESH:D007239
56 3800-3808 Disease denotes COVID-19 MESH:C000657245
57 4006-4015 Disease denotes infection MESH:D007239
59 4157-4164 Disease denotes COVID19 MESH:C000657245
63 5263-5268 Species denotes human Tax:9606
64 5272-5277 Species denotes human Tax:9606
65 5479-5487 Species denotes patients Tax:9606
69 5551-5558 Species denotes persons Tax:9606
70 5588-5596 Disease denotes infected MESH:D007239
71 5602-5610 Disease denotes COVID-19 MESH:C000657245
73 5711-5723 Species denotes participants Tax:9606
76 6005-6013 Species denotes children Tax:9606
77 6065-6073 Species denotes children Tax:9606
80 6296-6304 Disease denotes COVID-19 MESH:C000657245
81 6421-6429 Disease denotes coughing MESH:D003371
84 6653-6661 Disease denotes COVID-19 MESH:C000657245
85 6868-6877 Disease denotes infection MESH:D007239
87 7233-7241 Disease denotes COVID-19 MESH:C000657245
90 8647-8657 Species denotes outpatient Tax:9606
91 8598-8620 Disease denotes respiratory infections MESH:D012141
93 9061-9064 Chemical denotes EEA
97 9200-9206 Species denotes people Tax:9606
98 9219-9222 Chemical denotes EEA
99 9187-9195 Disease denotes COVID-19 MESH:C000657245
101 9456-9464 Disease denotes COVID-19 MESH:C000657245
105 9837-9862 Disease denotes Novel coronavirus disease MESH:C000657245
106 9869-9877 Disease denotes COVID-19 MESH:C000657245
107 10093-10126 Disease denotes coronavirus-disease-2019-COVID-19 MESH:C000657245
111 10131-10149 Species denotes COVID: coronavirus Tax:2697049
112 10293-10301 Species denotes SARS-CoV Tax:694009
113 10303-10348 Species denotes severe acute respiratory syndrome coronavirus Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 485-489 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 485-489 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 53-77 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T2 79-87 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 252-276 Disease denotes coronavirus disease-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 278-286 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 499-507 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 615-623 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 868-877 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 1083-1091 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 1161-1185 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1187-1195 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 1236-1244 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1516-1524 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 2014-2022 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 2214-2222 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 2793-2801 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 2850-2859 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T17 2940-2962 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T18 2967-2977 Disease denotes pneumonias http://purl.obolibrary.org/obo/MONDO_0005249
T19 3215-3223 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 3224-3233 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 3710-3719 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 3800-3808 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 4006-4015 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 4157-4164 Disease denotes COVID19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 5602-5610 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 6296-6304 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 6653-6661 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 6868-6877 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T29 7233-7241 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 8598-8620 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T31 9187-9195 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 9456-9464 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 9843-9867 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T34 9869-9877 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 10093-10117 Disease denotes coronavirus-disease-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T36 10118-10126 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 10269-10278 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T38 10293-10301 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 10303-10336 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 310-311 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 855-856 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 976-979 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T4 989-990 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1131-1136 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 1204-1206 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T7 1494-1506 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T8 1525-1526 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1546-1548 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T10 1617-1618 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1647-1649 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T12 2155-2156 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2342-2343 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 4107-4108 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 4209-4210 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 4380-4381 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T17 4399-4400 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 4416-4417 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 4730-4733 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T20 5263-5268 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T21 5272-5277 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T22 5747-5748 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 6306-6307 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T24 7836-7843 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T25 7873-7878 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T26 8000-8007 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing
T27 8175-8178 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T28 8576-8581 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T29 8717-8718 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T30 8928-8935 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T31 9571-9578 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T32 9698-9708 http://purl.obolibrary.org/obo/BFO_0000030 denotes objectives

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 3685-3696 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T2 3981-3992 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T3 8766-8777 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-146 Sentence denotes Updated rapid risk assessment from ECDC on the novel coronavirus disease 2019 (COVID-19) pandemic: increased transmission in the EU/EEA and the UK
T2 148-330 Sentence denotes The European Centre for Disease Prevention and Control (ECDC) provides regularly updated information on coronavirus disease-2019 (COVID-19) relevant to Europe on a dedicated webpage.
T3 331-466 Sentence denotes Besides general information including Q&As, daily case counts, and maps with disease distribution, examples of latest updates comprise:
T4 467-474 Sentence denotes Poster:
T5 475-633 Sentence denotes Effective hand-washing, COVID-19 - How to minimise the spread? and Considerations relating to social distancing measures in response to the COVID-19 epidemic.
T6 634-767 Sentence denotes ECDC also publishes regular risk assessments and the Box below contains the summary from the sixth update published on 12 March 2020.
T7 768-833 Sentence denotes Box Summary of the ECDC rapid risk assessment from 12 March 2020
T8 834-950 Sentence denotes On 31 December 2019, a cluster of pneumonia cases of unknown aetiology was reported in Wuhan, Hubei Province, China.
T9 951-1098 Sentence denotes On 9 January 2020, China CDC reported a novel coronavirus as the causative agent of this outbreak, which is phylogenetically in the SARS-CoV clade.
T10 1099-1197 Sentence denotes The disease associated with the virus is referred to as novel coronavirus disease 2019 (COVID-19).
T11 1198-1296 Sentence denotes As of 11 March 2020, 118,598 cases of COVID-19 were reported worldwide by more than 100 countries.
T12 1297-1452 Sentence denotes Since late February, the majority of cases reported are from outside China, with an increasing majority of these reported from EU/EEA countries and the UK.
T13 1453-1560 Sentence denotes The Director General of the World Health Organization declared COVID-19 a global pandemic on 11 March 2020.
T14 1561-1656 Sentence denotes All EU/EEA countries and the UK are affected, reporting a total of 17,413 cases as of 11 March.
T15 1657-1738 Sentence denotes Seven hundred and eleven cases reported by EU/EEA countries and the UK have died.
T16 1739-1818 Sentence denotes Italy represents 58% of the cases (n=10,149) and 88% of the fatalities (n=631).
T17 1819-1982 Sentence denotes The current pace of the increase in cases in the EU/EEA and the UK mirrors trends seen in China in January-early February and trends seen in Italy in mid-February.
T18 1983-2192 Sentence denotes In the current situation where COVID-19 is rapidly spreading worldwide and the number of cases in Europe is rising with increasing pace in several affected areas, there is a need for immediate targeted action.
T19 2193-2486 Sentence denotes The speed with which COVID-19 can cause nationally incapacitating epidemics once transmission within the community is established, indicates that in a few weeks or even days, it is likely that similar situations to those seen in China and Italy may be seen in other EU/EEA countries or the UK.
T20 2487-2601 Sentence denotes There are no vaccines available and there is little evidence on the effectiveness of potential therapeutic agents.
T21 2602-2766 Sentence denotes In addition, there is presumably no pre-existing immunity in the population against the new coronavirus and everyone in the population is assumed to be susceptible.
T22 2767-2894 Sentence denotes Clinical presentations of COVID-19 range from no symptoms (asymptomatic) to severe pneumonia; severe disease can lead to death.
T23 2895-3171 Sentence denotes While the majority of cases (80%) are milder respiratory infections and pneumonias, severe illness and death is more common among the elderly with other chronic underlying conditions, with these risk groups accounting for the majority of severe disease and fatalities to date.
T24 3172-3485 Sentence denotes The risk of severe disease associated with COVID-19 infection for people in the EU/EEA and UK is currently considered moderate for the general population and high for older adults and individuals with chronic underlying conditions, based on the probability of community transmission and the impact of the disease.
T25 3486-3604 Sentence denotes The risk of healthcare system capacity being exceeded in the EU/EEA and the UK in the coming weeks is considered high.
T26 3605-3771 Sentence denotes The impact and risk assessment on health system capacity can be mediated by the application of effective infection prevention and control and surge capacity measures.
T27 3772-3896 Sentence denotes The risk of transmission of COVID-19 in health and social institutions with large vulnerable populations is considered high.
T28 3897-4058 Sentence denotes The impact of transmission in health and social institutions can be mediated by the application of effective infection prevention and control and surge capacity.
T29 4059-4165 Sentence denotes The EU/EEA and the UK are quickly moving toward a scenario of sustained community transmission of COVID19.
T30 4166-4379 Sentence denotes The situation is evolving very quickly and a rapid, proactive and comprehensive approach is essential in order to delay transmission, as containing transmission to local epidemics is no longer considered feasible.
T31 4380-4682 Sentence denotes A rapid shift from a containment to a mitigation approach is required, as the rapid increase in cases, that is anticipated in the coming days to few weeks may not provide decision makers and hospitals enough time to realise, accept and adapt their response accordingly if not implemented ahead of time.
T32 4683-4884 Sentence denotes Measures taken at this stage should ultimately aim at protecting the most vulnerable population groups from severe illness and fatal outcome by reducing transmission and reinforcing healthcare systems.
T33 4885-5108 Sentence denotes Given the current epidemiology and risk assessment, and the expected developments in the next days to few weeks, the following public health measures to mitigate the impact of the pandemic are necessary in EU/EEA countries:
T34 5109-5243 Sentence denotes Social distancing measures should be implemented early in order to mitigate the impact of the epidemic and to delay the epidemic peak.
T35 5244-5488 Sentence denotes This can interrupt human-to-human transmission chains, prevent further spread, reduce the intensity of the epidemic and slow down the increase in cases, while allowing healthcare systems to prepare and cope with an increased influx of patients.
T36 5489-5511 Sentence denotes Such measures include:
T37 5512-5611 Sentence denotes the immediate isolation of symptomatic persons suspected or confirmed to be infected with COVID-19;
T38 5612-5777 Sentence denotes the suspension of mass gatherings, taking into consideration the size of the event, the density of participants and if the event is in a confined indoor environment;
T39 5778-5907 Sentence denotes social distancing measures at workplaces (for example teleworking, suspension of meetings, cancellation of non-essential travel);
T40 5908-6162 Sentence denotes measures in and closure of schools, taking into consideration the uncertainty in the evidence of children in transmitting the disease, need for day care for children, impact on nursing staff, potential to increase transmission to vulnerable grandparents;
T41 6163-6244 Sentence denotes cordon sanitaire of residential areas with high levels of community transmission.
T42 6245-6305 Sentence denotes Ensuring the public is aware of the seriousness of COVID-19.
T43 6306-6488 Sentence denotes A high degree of population understanding, solidarity and discipline is required to apply strict personal hygiene, coughing etiquette, self-monitoring and social distancing measures.
T44 6489-6626 Sentence denotes Community engagement and acceptance of stringent social distancing measures put in place are key in delaying and reducing further spread.
T45 6627-7011 Sentence denotes Prevention and control of COVID-19 in hospitals and long-term care facilities is an immediate priority in order to: (1) slow the demand for specialised healthcare, such as ICU beds; (2) safeguard populations vulnerable to severe outcomes of infection (3); protect healthcare workers that provide care; (4) minimise the export of cases to other healthcare facilities and the community.
T46 7012-7154 Sentence denotes Every healthcare facility should initiate training for all staff and those who may be required for healthcare provision during surge capacity.
T47 7155-7307 Sentence denotes Countries should identify healthcare units that can be designated to care for COVID-19 cases, to minimise transmission to non-cases and to conserve PPE.
T48 7308-7518 Sentence denotes Countries and healthcare institutions should identify additional facilities that can be used for the cohorting of cases with mild symptoms, in the event that surge capacity is exceeded by healthcare facilities.
T49 7519-7677 Sentence denotes The highest priority for use of respirators (FFP2/3) are healthcare workers, in particular those performing aerosol-generating procedures, including swabbing.
T50 7678-7999 Sentence denotes If resources or capacity are limited, rational approaches should be implemented to prioritise high-yield actions, which include: rational use of confirmatory testing, reducing contact tracing to focus only on high-yield contacts, rational use of PPE and hospitalisation and implementing rational criteria for deisolation.
T51 8000-8127 Sentence denotes Testing approaches should prioritise vulnerable populations, protection of social and healthcare institutions, including staff.
T52 8128-8243 Sentence denotes National surveillance systems should initially aim at rapidly detecting cases and assessing community transmission.
T53 8244-8457 Sentence denotes As the epidemic progresses, surveillance should monitor the intensity, geographical spread and the impact of the epidemic on the population and healthcare systems and assess the effectiveness of measures in place.
T54 8458-8716 Sentence denotes In circumstances with capacity shortages and strict implementation of social distancing measures, surveillance should focus on severe acute respiratory infections, sentinel surveillance in outpatient clinics or collection of data through telephone helplines.
T55 8717-8976 Sentence denotes A strategic approach based on early and rigorous application of these measures will help reduce the burden and pressure on the healthcare system, and in particular on hospitals, and will allow more time for the testing of therapeutics and vaccine development.
T56 8977-9004 Sentence denotes What is new in this update?
T57 9005-9075 Sentence denotes Updated data on the epidemiological situation in the EU/EEA and the UK
T58 9076-9165 Sentence denotes Recent findings on disease and transmissibility, including during the asymptomatic period
T59 9166-9233 Sentence denotes Risk associated with COVID-19 for people from the EU/EEA and the UK
T60 9234-9335 Sentence denotes Risk of local and widespread national community transmission in the EU/EEA and UK in the coming weeks
T61 9336-9431 Sentence denotes Risk to healthcare systems capacity being exceeded in the EU/EEA and the UK in the coming weeks
T62 9432-9532 Sentence denotes Risk of transmission of COVID-19 in health and social institutions with large vulnerable populations
T63 9533-9676 Sentence denotes Options for preparedness and response focused on the mitigation phase, including rational measures in case of resource constraints or shortages
T64 9677-9746 Sentence denotes Updated surveillance objectives and methods for the mitigation phase.
T65 9747-9754 Sentence denotes Source:
T66 9755-9813 Sentence denotes European Centre for Disease Prevention and Control (ECDC).
T67 9814-9836 Sentence denotes Rapid risk assessment:
T68 9837-9952 Sentence denotes Novel coronavirus disease 2019 (COVID-19) pandemic: increased transmission in the EU/EEA and the UK – sixth update.
T69 9953-9958 Sentence denotes ECDC:
T70 9959-9984 Sentence denotes Stockholm; 12 March 2020.
T71 9985-10130 Sentence denotes Available from: https://www.ecdc.europa.eu/sites/default/files/documents/RRA-sixth-update-Outbreak-of-novel-coronavirus-disease-2019-COVID-19.pdf
T72 10131-10164 Sentence denotes COVID: coronavirus disease; ECDC:
T73 10165-10224 Sentence denotes European Centre for Disease Prevention and Control; EU/EEA:
T74 10225-10353 Sentence denotes European Union/European Economic Area; ILI: influenza-like-illness; SARS-CoV: severe acute respiratory syndrome coronavirus; UK:
T75 10354-10369 Sentence denotes United Kingdom.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 868-877 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 2850-2859 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 2940-2962 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T4 2967-2977 Phenotype denotes pneumonias http://purl.obolibrary.org/obo/HP_0002090
T5 6421-6429 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T6 8598-8620 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947