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PMC:7077337 / 15340-18260 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
504 13-18 Species denotes women Tax:9606
505 149-154 Species denotes woman Tax:9606
506 366-374 Species denotes SARS-CoV Tax:694009
507 752-760 Species denotes SARS-CoV Tax:694009
508 865-869 Species denotes girl Tax:9606
509 1277-1285 Species denotes SARS-CoV Tax:694009
510 1569-1574 Species denotes woman Tax:9606
511 1652-1660 Species denotes SARS-CoV Tax:694009
512 1710-1715 Species denotes woman Tax:9606
513 2102-2110 Species denotes SARS-CoV Tax:694009
514 2397-2400 Species denotes boy Tax:9606
515 2486-2494 Species denotes SARS-CoV Tax:694009
516 2802-2813 Species denotes coronavirus Tax:694448
517 2639-2647 Species denotes SARS-CoV Tax:694009
518 2239-2246 Chemical denotes glucose MESH:D005947
519 24-28 Disease denotes SARS MESH:D045169
520 176-181 Disease denotes cough MESH:D003371
521 223-228 Disease denotes fever MESH:D005334
522 352-360 Disease denotes infected MESH:D007239
523 412-417 Disease denotes fever MESH:D005334
524 419-427 Disease denotes anorexia MESH:D000855
525 429-437 Disease denotes headache MESH:D006261
526 450-455 Disease denotes cough MESH:D003371
527 457-465 Disease denotes weakness MESH:D018908
528 471-490 Disease denotes shortness of breath MESH:D004417
529 554-563 Disease denotes pneumonia MESH:D011014
530 1809-1813 Disease denotes SARS MESH:D045169
531 1852-1857 Disease denotes fever MESH:D005334
532 1859-1866 Disease denotes myalgia MESH:D063806
533 1876-1884 Disease denotes headache MESH:D006261
534 1911-1916 Disease denotes cough MESH:D003371
535 1922-1941 Disease denotes shortness of breath MESH:D004417
536 1990-1994 Disease denotes SARS MESH:D045169
537 2322-2337 Disease denotes preterm rupture MESH:C563032

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 2239-2246 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T10 610-618 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T11 620-628 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T12 830-838 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T13 897-905 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T14 983-988 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T15 999-1004 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T16 1026-1037 Body_part denotes nasopharynx http://purl.org/sig/ont/fma/fma54878
T17 1042-1048 Body_part denotes rectum http://purl.org/sig/ont/fma/fma14544
T18 1064-1072 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T19 1074-1088 Body_part denotes umbilical cord http://purl.org/sig/ont/fma/fma85541
T20 1089-1094 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T21 1096-1110 Body_part denotes amniotic fluid http://purl.org/sig/ont/fma/fma305905
T22 1116-1122 Body_part denotes breast http://purl.org/sig/ont/fma/fma9601
T23 1123-1127 Body_part denotes milk http://purl.org/sig/ont/fma/fma62100
T24 1165-1168 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T25 1263-1273 Body_part denotes Antibodies http://purl.org/sig/ont/fma/fma62871
T26 1314-1319 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T27 1321-1335 Body_part denotes umbilical cord http://purl.org/sig/ont/fma/fma85541
T28 1336-1341 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T29 1347-1353 Body_part denotes breast http://purl.org/sig/ont/fma/fma9601
T30 1354-1358 Body_part denotes milk http://purl.org/sig/ont/fma/fma62100
T31 1465-1470 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T32 2010-2015 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T33 2239-2246 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T34 2440-2445 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T35 2517-2531 Body_part denotes umbilical cord http://purl.org/sig/ont/fma/fma85541
T36 2532-2537 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T37 2542-2550 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T38 2566-2572 Body_part denotes Breast http://purl.org/sig/ont/fma/fma9601
T39 2573-2577 Body_part denotes milk http://purl.org/sig/ont/fma/fma62100
T40 2694-2699 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T41 2701-2706 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T42 2712-2723 Body_part denotes nasopharynx http://purl.org/sig/ont/fma/fma54878
T43 2744-2758 Body_part denotes umbilical cord http://purl.org/sig/ont/fma/fma85541
T44 2759-2764 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T45 2814-2817 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T46 2829-2837 Body_part denotes Neonatal http://purl.org/sig/ont/fma/fma292381
T47 2838-2843 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T48 2916-2919 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 610-618 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T8 620-628 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T9 830-838 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T10 897-905 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T11 983-988 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T12 999-1004 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T13 1026-1037 Body_part denotes nasopharynx http://purl.obolibrary.org/obo/UBERON_0001728
T14 1042-1048 Body_part denotes rectum http://purl.obolibrary.org/obo/UBERON_0001052
T15 1064-1072 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T16 1074-1094 Body_part denotes umbilical cord blood http://purl.obolibrary.org/obo/UBERON_0012168
T17 1074-1088 Body_part denotes umbilical cord http://purl.obolibrary.org/obo/UBERON_0002331
T18 1089-1094 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T19 1096-1110 Body_part denotes amniotic fluid http://purl.obolibrary.org/obo/UBERON_0000173
T20 1116-1122 Body_part denotes breast http://purl.obolibrary.org/obo/UBERON_0000310
T21 1123-1127 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T22 1314-1319 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T23 1321-1341 Body_part denotes umbilical cord blood http://purl.obolibrary.org/obo/UBERON_0012168
T24 1321-1335 Body_part denotes umbilical cord http://purl.obolibrary.org/obo/UBERON_0002331
T25 1336-1341 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T26 1347-1353 Body_part denotes breast http://purl.obolibrary.org/obo/UBERON_0000310
T27 1354-1358 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T28 1465-1470 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T29 2010-2015 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T30 2440-2445 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T31 2517-2537 Body_part denotes umbilical cord blood http://purl.obolibrary.org/obo/UBERON_0012168
T32 2517-2531 Body_part denotes umbilical cord http://purl.obolibrary.org/obo/UBERON_0002331
T33 2532-2537 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T34 2542-2550 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T35 2566-2572 Body_part denotes Breast http://purl.obolibrary.org/obo/UBERON_0000310
T36 2573-2577 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T37 2694-2699 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T38 2701-2706 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T39 2712-2723 Body_part denotes nasopharynx http://purl.obolibrary.org/obo/UBERON_0001728
T40 2744-2764 Body_part denotes umbilical cord blood http://purl.obolibrary.org/obo/UBERON_0012168
T41 2744-2758 Body_part denotes umbilical cord http://purl.obolibrary.org/obo/UBERON_0002331
T42 2759-2764 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T43 2838-2843 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T124 24-28 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T125 366-374 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T126 366-370 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T127 554-563 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T128 620-635 Disease denotes placenta previa http://purl.obolibrary.org/obo/MONDO_0005918
T129 752-760 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T130 752-756 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T131 830-845 Disease denotes placenta previa http://purl.obolibrary.org/obo/MONDO_0005918
T132 1277-1285 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T133 1277-1281 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T134 1652-1660 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T135 1652-1656 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T136 1809-1813 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T137 1990-1994 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T138 2102-2110 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T139 2102-2106 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T140 2486-2494 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T141 2486-2490 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T142 2639-2647 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T143 2639-2643 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T78 70-71 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 112-114 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T80 126-127 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 128-130 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T82 318-319 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 598-599 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 610-618 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T85 610-618 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T86 620-628 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T87 620-628 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T88 830-838 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T89 830-838 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T90 850-851 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 897-905 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T92 897-905 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T93 993-1004 http://purl.obolibrary.org/obo/UBERON_0000178 denotes whole blood
T94 993-1004 http://www.ebi.ac.uk/efo/EFO_0000296 denotes whole blood
T95 1042-1048 http://purl.obolibrary.org/obo/UBERON_0001052 denotes rectum
T96 1042-1048 http://purl.obolibrary.org/obo/UBERON_0006866 denotes rectum
T97 1064-1072 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T98 1064-1072 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T99 1074-1088 http://purl.obolibrary.org/obo/UBERON_0002331 denotes umbilical cord
T100 1074-1088 http://www.ebi.ac.uk/efo/EFO_0001415 denotes umbilical cord
T101 1089-1094 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T102 1089-1094 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T103 1096-1110 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Amniotic_Fluid denotes amniotic fluid
T104 1116-1122 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
T105 1195-1201 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T106 1321-1335 http://purl.obolibrary.org/obo/UBERON_0002331 denotes umbilical cord
T107 1321-1335 http://www.ebi.ac.uk/efo/EFO_0001415 denotes umbilical cord
T108 1336-1341 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T109 1336-1341 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T110 1347-1353 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
T111 1465-1470 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T112 1465-1470 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T113 1491-1498 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T114 1555-1556 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 1898-1899 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T116 2255-2256 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T117 2296-2298 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T118 2341-2350 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T119 2382-2383 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 2517-2531 http://purl.obolibrary.org/obo/UBERON_0002331 denotes umbilical cord
T121 2517-2531 http://www.ebi.ac.uk/efo/EFO_0001415 denotes umbilical cord
T122 2532-2537 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T123 2532-2537 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T124 2542-2550 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T125 2542-2550 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T126 2566-2572 http://purl.obolibrary.org/obo/UBERON_0000310 denotes Breast
T127 2694-2699 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T128 2694-2699 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T129 2744-2758 http://purl.obolibrary.org/obo/UBERON_0002331 denotes umbilical cord
T130 2744-2758 http://www.ebi.ac.uk/efo/EFO_0001415 denotes umbilical cord
T131 2759-2764 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T132 2759-2764 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T6 2239-2246 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T7 388-397 http://purl.obolibrary.org/obo/GO_0007565 denotes gestation
T8 805-814 http://purl.obolibrary.org/obo/GO_0007565 denotes gestation
T9 1213-1226 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T10 1213-1226 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T11 1617-1626 http://purl.obolibrary.org/obo/GO_0007565 denotes gestation
T12 2305-2314 http://purl.obolibrary.org/obo/GO_0007565 denotes gestation

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T43 176-181 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T44 223-228 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T45 412-417 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T46 419-427 Phenotype denotes anorexia http://purl.obolibrary.org/obo/HP_0002039
T47 429-437 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T48 450-455 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T49 471-490 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T50 554-563 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T51 1852-1857 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T52 1859-1866 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T53 1868-1874 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T54 1876-1884 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T55 1900-1916 Phenotype denotes productive cough http://purl.obolibrary.org/obo/HP_0031245
T56 1922-1941 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T57 1946-1954 Phenotype denotes wheezing http://purl.obolibrary.org/obo/HP_0030828
T58 2355-2369 Phenotype denotes fetal distress http://purl.obolibrary.org/obo/HP_0025116

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T101 0-66 Sentence denotes Two pregnant women with SARS were reported from the United States.
T102 67-229 Sentence denotes In a detailed case report, Robertson et al. [35] described a 36-year-old pregnant woman with an intermittent cough of approximately 10 days duration and no fever.
T103 230-375 Sentence denotes While travelling in Hong Kong during the 2003 epidemic, she was exposed at her hotel to a person subsequently known to be infected with SARS-CoV.
T104 376-491 Sentence denotes At 19 weeks gestation she developed fever, anorexia, headache, increasing cough, weakness, and shortness of breath.
T105 492-564 Sentence denotes Upon returning to the United States she was hospitalized with pneumonia.
T106 565-663 Sentence denotes Obstetrical ultrasounds revealed a low-lying placenta (placenta previa) but were otherwise normal.
T107 664-761 Sentence denotes Following her discharge home and clinical recovery, she was found to have antibodies to SARS-CoV.
T108 762-892 Sentence denotes She underwent cesarean section at 38 weeks gestation because of the placenta previa and a healthy baby girl was delivered [35,36].
T109 893-938 Sentence denotes The placenta was interpreted as being normal.
T110 939-1262 Sentence denotes At 130 days post-maternal illness, maternal serum and whole blood, swabs from maternal nasopharynx and rectum, post-delivery placenta, umbilical cord blood, amniotic fluid, and breast milk were collected for analysis—no viral RNA was detected in specimens tested by reverse transcriptase polymerase chain reaction (RT-PCR).
T111 1263-1425 Sentence denotes Antibodies to SARS-CoV were detected from maternal serum, umbilical cord blood, and breast milk by enzyme immunoassay (EIA) and indirect immunofluorescence assay.
T112 1426-1515 Sentence denotes No clinical specimens (except for cord blood) were available for testing from the infant.
T113 1516-1721 Sentence denotes The second case in the USA occurred in a 38-year-old woman who had travelled to Hong Kong at 7 weeks gestation where she was exposed to SARS-CoV in the same hotel as the aforementioned American woman [37].
T114 1722-1955 Sentence denotes Following her return to the United States, her husband developed the clinical onset of SARS, and 6 days later she became ill with fever, myalgia, chills, headache, coryza, and a productive cough with shortness of breath and wheezing.
T115 1956-2162 Sentence denotes Following her hospitalization for SARS she recovered, serum samples taken on days 28 and 64 post-onset of illness were positive for antibodies to SARS-CoV by enzyme immunoassay and immunofluorescent assays.
T116 2163-2254 Sentence denotes Her pregnancy continued and was unremarkable except for developing elevated glucose levels.
T117 2255-2401 Sentence denotes A cesarean section that was performed at 36 weeks gestation due to preterm rupture of membranes and fetal distress resulted in a healthy baby boy.
T118 2402-2565 Sentence denotes At the time of delivery, the mother’s serum samples were positive for antibodies to SARS-CoV, but samples taken of umbilical cord blood and placenta were negative.
T119 2566-2659 Sentence denotes Breast milk sampled 12 and 30 days after delivery were also negative for SARS-CoV antibodies.
T120 2660-2828 Sentence denotes Specimens evaluated from maternal blood, stool, and nasopharynx samples, as well as umbilical cord blood of the infant, were all negative for coronavirus RNA by RT-PCR.
T121 2829-2920 Sentence denotes Neonatal stool samples obtained on days-of-life 12 and 30 were also negative for viral RNA.

2_test

Id Subject Object Predicate Lexical cue
32050635-15030710-144359548 112-114 15030710 denotes 35
32050635-15030710-144359549 885-887 15030710 denotes 35
32050635-15137260-144359550 888-890 15137260 denotes 36
32050635-15503406-144359551 1717-1719 15503406 denotes 37