PMC:7077191 / 31083-33490 JSONTXT

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    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"1237","span":{"begin":376,"end":380},"obj":"Gene"},{"id":"1238","span":{"begin":428,"end":478},"obj":"Gene"},{"id":"1239","span":{"begin":639,"end":643},"obj":"Gene"},{"id":"1240","span":{"begin":792,"end":796},"obj":"Gene"},{"id":"1241","span":{"begin":882,"end":886},"obj":"Gene"},{"id":"1242","span":{"begin":919,"end":923},"obj":"Gene"},{"id":"1243","span":{"begin":1926,"end":1932},"obj":"Gene"},{"id":"1244","span":{"begin":2001,"end":2005},"obj":"Gene"},{"id":"1245","span":{"begin":2006,"end":2010},"obj":"Gene"},{"id":"1246","span":{"begin":1262,"end":1267},"obj":"Gene"},{"id":"1247","span":{"begin":1351,"end":1355},"obj":"Gene"},{"id":"1248","span":{"begin":0,"end":10},"obj":"Species"},{"id":"1249","span":{"begin":12,"end":20},"obj":"Species"}],"attributes":[{"id":"A1237","pred":"tao:has_database_id","subj":"1237","obj":"Gene:5499"},{"id":"A1239","pred":"tao:has_database_id","subj":"1239","obj":"Gene:5499"},{"id":"A1240","pred":"tao:has_database_id","subj":"1240","obj":"Gene:5499"},{"id":"A1241","pred":"tao:has_database_id","subj":"1241","obj":"Gene:5499"},{"id":"A1242","pred":"tao:has_database_id","subj":"1242","obj":"Gene:55354"},{"id":"A1243","pred":"tao:has_database_id","subj":"1243","obj":"Gene:3704"},{"id":"A1244","pred":"tao:has_database_id","subj":"1244","obj":"Gene:10045"},{"id":"A1245","pred":"tao:has_database_id","subj":"1245","obj":"Gene:5499"},{"id":"A1246","pred":"tao:has_database_id","subj":"1246","obj":"Gene:43740574"},{"id":"A1247","pred":"tao:has_database_id","subj":"1247","obj":"Gene:43740577"},{"id":"A1248","pred":"tao:has_database_id","subj":"1248","obj":"Tax:2697049"},{"id":"A1249","pred":"tao:has_database_id","subj":"1249","obj":"Tax:694009"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"SARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%"}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T100","span":{"begin":21,"end":28},"obj":"Body_part"},{"id":"T101","span":{"begin":727,"end":734},"obj":"Body_part"},{"id":"T102","span":{"begin":1019,"end":1026},"obj":"Body_part"},{"id":"T103","span":{"begin":1057,"end":1064},"obj":"Body_part"},{"id":"T104","span":{"begin":1108,"end":1115},"obj":"Body_part"},{"id":"T105","span":{"begin":1146,"end":1153},"obj":"Body_part"},{"id":"T106","span":{"begin":1197,"end":1204},"obj":"Body_part"},{"id":"T107","span":{"begin":1222,"end":1229},"obj":"Body_part"},{"id":"T108","span":{"begin":1268,"end":1275},"obj":"Body_part"},{"id":"T109","span":{"begin":1306,"end":1313},"obj":"Body_part"},{"id":"T110","span":{"begin":1356,"end":1363},"obj":"Body_part"},{"id":"T111","span":{"begin":1402,"end":1409},"obj":"Body_part"},{"id":"T112","span":{"begin":1682,"end":1686},"obj":"Body_part"},{"id":"T113","span":{"begin":1818,"end":1825},"obj":"Body_part"},{"id":"T114","span":{"begin":1845,"end":1852},"obj":"Body_part"},{"id":"T115","span":{"begin":1976,"end":1983},"obj":"Body_part"},{"id":"T116","span":{"begin":2057,"end":2069},"obj":"Body_part"},{"id":"T117","span":{"begin":2094,"end":2101},"obj":"Body_part"},{"id":"T118","span":{"begin":2191,"end":2198},"obj":"Body_part"},{"id":"T119","span":{"begin":2229,"end":2232},"obj":"Body_part"},{"id":"T120","span":{"begin":2243,"end":2246},"obj":"Body_part"},{"id":"T121","span":{"begin":2333,"end":2345},"obj":"Body_part"},{"id":"T122","span":{"begin":2369,"end":2381},"obj":"Body_part"}],"attributes":[{"id":"A100","pred":"fma_id","subj":"T100","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A101","pred":"fma_id","subj":"T101","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A102","pred":"fma_id","subj":"T102","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A103","pred":"fma_id","subj":"T103","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A104","pred":"fma_id","subj":"T104","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A105","pred":"fma_id","subj":"T105","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A106","pred":"fma_id","subj":"T106","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A107","pred":"fma_id","subj":"T107","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A108","pred":"fma_id","subj":"T108","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A109","pred":"fma_id","subj":"T109","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A110","pred":"fma_id","subj":"T110","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A111","pred":"fma_id","subj":"T111","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A112","pred":"fma_id","subj":"T112","obj":"http://purl.org/sig/ont/fma/fma84120"},{"id":"A113","pred":"fma_id","subj":"T113","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A114","pred":"fma_id","subj":"T114","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A115","pred":"fma_id","subj":"T115","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A116","pred":"fma_id","subj":"T116","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A117","pred":"fma_id","subj":"T117","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A118","pred":"fma_id","subj":"T118","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A119","pred":"fma_id","subj":"T119","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A120","pred":"fma_id","subj":"T120","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A121","pred":"fma_id","subj":"T121","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A122","pred":"fma_id","subj":"T122","obj":"http://purl.org/sig/ont/fma/fma62925"}],"text":"SARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%"}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T394","span":{"begin":0,"end":8},"obj":"Disease"},{"id":"T395","span":{"begin":0,"end":4},"obj":"Disease"},{"id":"T396","span":{"begin":12,"end":20},"obj":"Disease"},{"id":"T397","span":{"begin":12,"end":16},"obj":"Disease"}],"attributes":[{"id":"A394","pred":"mondo_id","subj":"T394","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A395","pred":"mondo_id","subj":"T395","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A396","pred":"mondo_id","subj":"T396","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A397","pred":"mondo_id","subj":"T397","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"SARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%"}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T274","span":{"begin":388,"end":391},"obj":"http://purl.obolibrary.org/obo/CLO_0009366"},{"id":"T275","span":{"begin":388,"end":391},"obj":"http://purl.obolibrary.org/obo/CLO_0052470"},{"id":"T276","span":{"begin":450,"end":451},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T277","span":{"begin":709,"end":710},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T278","span":{"begin":915,"end":917},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T279","span":{"begin":1438,"end":1440},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T280","span":{"begin":1618,"end":1623},"obj":"http://purl.obolibrary.org/obo/CLO_0001180"},{"id":"T281","span":{"begin":1805,"end":1807},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T282","span":{"begin":1933,"end":1936},"obj":"http://purl.obolibrary.org/obo/CLO_0003679"},{"id":"T283","span":{"begin":2048,"end":2056},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T284","span":{"begin":2225,"end":2227},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"}],"text":"SARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%"}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T158","span":{"begin":21,"end":28},"obj":"Chemical"},{"id":"T159","span":{"begin":480,"end":485},"obj":"Chemical"},{"id":"T160","span":{"begin":727,"end":734},"obj":"Chemical"},{"id":"T161","span":{"begin":1019,"end":1026},"obj":"Chemical"},{"id":"T162","span":{"begin":1057,"end":1064},"obj":"Chemical"},{"id":"T163","span":{"begin":1108,"end":1115},"obj":"Chemical"},{"id":"T164","span":{"begin":1146,"end":1153},"obj":"Chemical"},{"id":"T165","span":{"begin":1197,"end":1204},"obj":"Chemical"},{"id":"T166","span":{"begin":1222,"end":1229},"obj":"Chemical"},{"id":"T167","span":{"begin":1268,"end":1275},"obj":"Chemical"},{"id":"T168","span":{"begin":1306,"end":1313},"obj":"Chemical"},{"id":"T169","span":{"begin":1356,"end":1363},"obj":"Chemical"},{"id":"T170","span":{"begin":1402,"end":1409},"obj":"Chemical"},{"id":"T171","span":{"begin":1447,"end":1453},"obj":"Chemical"},{"id":"T173","span":{"begin":1507,"end":1509},"obj":"Chemical"},{"id":"T174","span":{"begin":1818,"end":1825},"obj":"Chemical"},{"id":"T175","span":{"begin":1845,"end":1852},"obj":"Chemical"},{"id":"T176","span":{"begin":1976,"end":1983},"obj":"Chemical"},{"id":"T177","span":{"begin":2057,"end":2069},"obj":"Chemical"},{"id":"T178","span":{"begin":2094,"end":2101},"obj":"Chemical"},{"id":"T179","span":{"begin":2191,"end":2198},"obj":"Chemical"},{"id":"T180","span":{"begin":2333,"end":2345},"obj":"Chemical"},{"id":"T181","span":{"begin":2369,"end":2381},"obj":"Chemical"}],"attributes":[{"id":"A158","pred":"chebi_id","subj":"T158","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A159","pred":"chebi_id","subj":"T159","obj":"http://purl.obolibrary.org/obo/CHEBI_30212"},{"id":"A160","pred":"chebi_id","subj":"T160","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A161","pred":"chebi_id","subj":"T161","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A162","pred":"chebi_id","subj":"T162","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A163","pred":"chebi_id","subj":"T163","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A164","pred":"chebi_id","subj":"T164","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A165","pred":"chebi_id","subj":"T165","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A166","pred":"chebi_id","subj":"T166","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A167","pred":"chebi_id","subj":"T167","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A168","pred":"chebi_id","subj":"T168","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A169","pred":"chebi_id","subj":"T169","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A170","pred":"chebi_id","subj":"T170","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A171","pred":"chebi_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/CHEBI_33942"},{"id":"A172","pred":"chebi_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/CHEBI_47013"},{"id":"A173","pred":"chebi_id","subj":"T173","obj":"http://purl.obolibrary.org/obo/CHEBI_73614"},{"id":"A174","pred":"chebi_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A175","pred":"chebi_id","subj":"T175","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A176","pred":"chebi_id","subj":"T176","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A177","pred":"chebi_id","subj":"T177","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A178","pred":"chebi_id","subj":"T178","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A179","pred":"chebi_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A180","pred":"chebi_id","subj":"T180","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A181","pred":"chebi_id","subj":"T181","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"}],"text":"SARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%"}

    LitCovid-PD-GO-BP

    {"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T14","span":{"begin":1549,"end":1559},"obj":"http://purl.obolibrary.org/obo/GO_0004175"}],"text":"SARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%"}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T291","span":{"begin":0,"end":20},"obj":"Sentence"},{"id":"T292","span":{"begin":21,"end":128},"obj":"Sentence"},{"id":"T293","span":{"begin":129,"end":210},"obj":"Sentence"},{"id":"T294","span":{"begin":211,"end":279},"obj":"Sentence"},{"id":"T295","span":{"begin":280,"end":345},"obj":"Sentence"},{"id":"T296","span":{"begin":346,"end":418},"obj":"Sentence"},{"id":"T297","span":{"begin":419,"end":513},"obj":"Sentence"},{"id":"T298","span":{"begin":514,"end":608},"obj":"Sentence"},{"id":"T299","span":{"begin":609,"end":676},"obj":"Sentence"},{"id":"T300","span":{"begin":677,"end":759},"obj":"Sentence"},{"id":"T301","span":{"begin":760,"end":823},"obj":"Sentence"},{"id":"T302","span":{"begin":824,"end":914},"obj":"Sentence"},{"id":"T303","span":{"begin":915,"end":1008},"obj":"Sentence"},{"id":"T304","span":{"begin":1009,"end":1098},"obj":"Sentence"},{"id":"T305","span":{"begin":1099,"end":1186},"obj":"Sentence"},{"id":"T306","span":{"begin":1187,"end":1257},"obj":"Sentence"},{"id":"T307","span":{"begin":1258,"end":1346},"obj":"Sentence"},{"id":"T308","span":{"begin":1347,"end":1391},"obj":"Sentence"},{"id":"T309","span":{"begin":1392,"end":1437},"obj":"Sentence"},{"id":"T310","span":{"begin":1438,"end":1536},"obj":"Sentence"},{"id":"T311","span":{"begin":1537,"end":1617},"obj":"Sentence"},{"id":"T312","span":{"begin":1618,"end":1722},"obj":"Sentence"},{"id":"T313","span":{"begin":1723,"end":1804},"obj":"Sentence"},{"id":"T314","span":{"begin":1805,"end":1878},"obj":"Sentence"},{"id":"T315","span":{"begin":1879,"end":1964},"obj":"Sentence"},{"id":"T316","span":{"begin":1965,"end":2043},"obj":"Sentence"},{"id":"T317","span":{"begin":2044,"end":2128},"obj":"Sentence"},{"id":"T318","span":{"begin":2129,"end":2224},"obj":"Sentence"},{"id":"T319","span":{"begin":2225,"end":2320},"obj":"Sentence"},{"id":"T320","span":{"begin":2321,"end":2407},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"SARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%"}