PMC:7077191 / 31007-33674 JSONTXT

Annnotations TAB JSON ListView MergeView

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"1237","span":{"begin":452,"end":456},"obj":"Gene"},{"id":"1238","span":{"begin":504,"end":554},"obj":"Gene"},{"id":"1239","span":{"begin":715,"end":719},"obj":"Gene"},{"id":"1240","span":{"begin":868,"end":872},"obj":"Gene"},{"id":"1241","span":{"begin":958,"end":962},"obj":"Gene"},{"id":"1242","span":{"begin":995,"end":999},"obj":"Gene"},{"id":"1243","span":{"begin":2002,"end":2008},"obj":"Gene"},{"id":"1244","span":{"begin":2077,"end":2081},"obj":"Gene"},{"id":"1245","span":{"begin":2082,"end":2086},"obj":"Gene"},{"id":"1246","span":{"begin":1338,"end":1343},"obj":"Gene"},{"id":"1247","span":{"begin":1427,"end":1431},"obj":"Gene"},{"id":"1248","span":{"begin":76,"end":86},"obj":"Species"},{"id":"1249","span":{"begin":88,"end":96},"obj":"Species"},{"id":"1252","span":{"begin":41,"end":51},"obj":"Species"},{"id":"1253","span":{"begin":56,"end":64},"obj":"Species"}],"attributes":[{"id":"A1237","pred":"tao:has_database_id","subj":"1237","obj":"Gene:5499"},{"id":"A1239","pred":"tao:has_database_id","subj":"1239","obj":"Gene:5499"},{"id":"A1240","pred":"tao:has_database_id","subj":"1240","obj":"Gene:5499"},{"id":"A1241","pred":"tao:has_database_id","subj":"1241","obj":"Gene:5499"},{"id":"A1242","pred":"tao:has_database_id","subj":"1242","obj":"Gene:55354"},{"id":"A1243","pred":"tao:has_database_id","subj":"1243","obj":"Gene:3704"},{"id":"A1244","pred":"tao:has_database_id","subj":"1244","obj":"Gene:10045"},{"id":"A1245","pred":"tao:has_database_id","subj":"1245","obj":"Gene:5499"},{"id":"A1246","pred":"tao:has_database_id","subj":"1246","obj":"Gene:43740574"},{"id":"A1247","pred":"tao:has_database_id","subj":"1247","obj":"Gene:43740577"},{"id":"A1248","pred":"tao:has_database_id","subj":"1248","obj":"Tax:2697049"},{"id":"A1249","pred":"tao:has_database_id","subj":"1249","obj":"Tax:694009"},{"id":"A1252","pred":"tao:has_database_id","subj":"1252","obj":"Tax:2697049"},{"id":"A1253","pred":"tao:has_database_id","subj":"1253","obj":"Tax:694009"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 2 Comparison of protein sequences SARS-CoV-2 and SARS-CoV by Blastp.\nSARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%\n“-” represents no homologous protein. Query cover represents the percentage of the protein sequences that are participating in the comparison. Percent identity indicates the homology."}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T99","span":{"begin":23,"end":30},"obj":"Body_part"},{"id":"T100","span":{"begin":97,"end":104},"obj":"Body_part"},{"id":"T101","span":{"begin":803,"end":810},"obj":"Body_part"},{"id":"T102","span":{"begin":1095,"end":1102},"obj":"Body_part"},{"id":"T103","span":{"begin":1133,"end":1140},"obj":"Body_part"},{"id":"T104","span":{"begin":1184,"end":1191},"obj":"Body_part"},{"id":"T105","span":{"begin":1222,"end":1229},"obj":"Body_part"},{"id":"T106","span":{"begin":1273,"end":1280},"obj":"Body_part"},{"id":"T107","span":{"begin":1298,"end":1305},"obj":"Body_part"},{"id":"T108","span":{"begin":1344,"end":1351},"obj":"Body_part"},{"id":"T109","span":{"begin":1382,"end":1389},"obj":"Body_part"},{"id":"T110","span":{"begin":1432,"end":1439},"obj":"Body_part"},{"id":"T111","span":{"begin":1478,"end":1485},"obj":"Body_part"},{"id":"T112","span":{"begin":1758,"end":1762},"obj":"Body_part"},{"id":"T113","span":{"begin":1894,"end":1901},"obj":"Body_part"},{"id":"T114","span":{"begin":1921,"end":1928},"obj":"Body_part"},{"id":"T115","span":{"begin":2052,"end":2059},"obj":"Body_part"},{"id":"T116","span":{"begin":2133,"end":2145},"obj":"Body_part"},{"id":"T117","span":{"begin":2170,"end":2177},"obj":"Body_part"},{"id":"T118","span":{"begin":2267,"end":2274},"obj":"Body_part"},{"id":"T119","span":{"begin":2305,"end":2308},"obj":"Body_part"},{"id":"T120","span":{"begin":2319,"end":2322},"obj":"Body_part"},{"id":"T121","span":{"begin":2409,"end":2421},"obj":"Body_part"},{"id":"T122","span":{"begin":2445,"end":2457},"obj":"Body_part"},{"id":"T123","span":{"begin":2513,"end":2520},"obj":"Body_part"},{"id":"T124","span":{"begin":2567,"end":2574},"obj":"Body_part"}],"attributes":[{"id":"A99","pred":"fma_id","subj":"T99","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A100","pred":"fma_id","subj":"T100","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A101","pred":"fma_id","subj":"T101","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A102","pred":"fma_id","subj":"T102","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A103","pred":"fma_id","subj":"T103","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A104","pred":"fma_id","subj":"T104","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A105","pred":"fma_id","subj":"T105","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A106","pred":"fma_id","subj":"T106","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A107","pred":"fma_id","subj":"T107","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A108","pred":"fma_id","subj":"T108","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A109","pred":"fma_id","subj":"T109","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A110","pred":"fma_id","subj":"T110","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A111","pred":"fma_id","subj":"T111","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A112","pred":"fma_id","subj":"T112","obj":"http://purl.org/sig/ont/fma/fma84120"},{"id":"A113","pred":"fma_id","subj":"T113","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A114","pred":"fma_id","subj":"T114","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A115","pred":"fma_id","subj":"T115","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A116","pred":"fma_id","subj":"T116","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A117","pred":"fma_id","subj":"T117","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A118","pred":"fma_id","subj":"T118","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A119","pred":"fma_id","subj":"T119","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A120","pred":"fma_id","subj":"T120","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A121","pred":"fma_id","subj":"T121","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A122","pred":"fma_id","subj":"T122","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A123","pred":"fma_id","subj":"T123","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A124","pred":"fma_id","subj":"T124","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"Table 2 Comparison of protein sequences SARS-CoV-2 and SARS-CoV by Blastp.\nSARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%\n“-” represents no homologous protein. Query cover represents the percentage of the protein sequences that are participating in the comparison. Percent identity indicates the homology."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T390","span":{"begin":41,"end":49},"obj":"Disease"},{"id":"T391","span":{"begin":41,"end":45},"obj":"Disease"},{"id":"T392","span":{"begin":56,"end":64},"obj":"Disease"},{"id":"T393","span":{"begin":56,"end":60},"obj":"Disease"},{"id":"T394","span":{"begin":76,"end":84},"obj":"Disease"},{"id":"T395","span":{"begin":76,"end":80},"obj":"Disease"},{"id":"T396","span":{"begin":88,"end":96},"obj":"Disease"},{"id":"T397","span":{"begin":88,"end":92},"obj":"Disease"}],"attributes":[{"id":"A390","pred":"mondo_id","subj":"T390","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A391","pred":"mondo_id","subj":"T391","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A392","pred":"mondo_id","subj":"T392","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A393","pred":"mondo_id","subj":"T393","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A394","pred":"mondo_id","subj":"T394","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A395","pred":"mondo_id","subj":"T395","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A396","pred":"mondo_id","subj":"T396","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A397","pred":"mondo_id","subj":"T397","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table 2 Comparison of protein sequences SARS-CoV-2 and SARS-CoV by Blastp.\nSARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%\n“-” represents no homologous protein. Query cover represents the percentage of the protein sequences that are participating in the comparison. Percent identity indicates the homology."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T274","span":{"begin":464,"end":467},"obj":"http://purl.obolibrary.org/obo/CLO_0009366"},{"id":"T275","span":{"begin":464,"end":467},"obj":"http://purl.obolibrary.org/obo/CLO_0052470"},{"id":"T276","span":{"begin":526,"end":527},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T277","span":{"begin":785,"end":786},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T278","span":{"begin":991,"end":993},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T279","span":{"begin":1514,"end":1516},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T280","span":{"begin":1694,"end":1699},"obj":"http://purl.obolibrary.org/obo/CLO_0001180"},{"id":"T281","span":{"begin":1881,"end":1883},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T282","span":{"begin":2009,"end":2012},"obj":"http://purl.obolibrary.org/obo/CLO_0003679"},{"id":"T283","span":{"begin":2124,"end":2132},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T284","span":{"begin":2301,"end":2303},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"}],"text":"Table 2 Comparison of protein sequences SARS-CoV-2 and SARS-CoV by Blastp.\nSARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%\n“-” represents no homologous protein. Query cover represents the percentage of the protein sequences that are participating in the comparison. Percent identity indicates the homology."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T157","span":{"begin":23,"end":30},"obj":"Chemical"},{"id":"T158","span":{"begin":97,"end":104},"obj":"Chemical"},{"id":"T159","span":{"begin":556,"end":561},"obj":"Chemical"},{"id":"T160","span":{"begin":803,"end":810},"obj":"Chemical"},{"id":"T161","span":{"begin":1095,"end":1102},"obj":"Chemical"},{"id":"T162","span":{"begin":1133,"end":1140},"obj":"Chemical"},{"id":"T163","span":{"begin":1184,"end":1191},"obj":"Chemical"},{"id":"T164","span":{"begin":1222,"end":1229},"obj":"Chemical"},{"id":"T165","span":{"begin":1273,"end":1280},"obj":"Chemical"},{"id":"T166","span":{"begin":1298,"end":1305},"obj":"Chemical"},{"id":"T167","span":{"begin":1344,"end":1351},"obj":"Chemical"},{"id":"T168","span":{"begin":1382,"end":1389},"obj":"Chemical"},{"id":"T169","span":{"begin":1432,"end":1439},"obj":"Chemical"},{"id":"T170","span":{"begin":1478,"end":1485},"obj":"Chemical"},{"id":"T171","span":{"begin":1523,"end":1529},"obj":"Chemical"},{"id":"T173","span":{"begin":1583,"end":1585},"obj":"Chemical"},{"id":"T174","span":{"begin":1894,"end":1901},"obj":"Chemical"},{"id":"T175","span":{"begin":1921,"end":1928},"obj":"Chemical"},{"id":"T176","span":{"begin":2052,"end":2059},"obj":"Chemical"},{"id":"T177","span":{"begin":2133,"end":2145},"obj":"Chemical"},{"id":"T178","span":{"begin":2170,"end":2177},"obj":"Chemical"},{"id":"T179","span":{"begin":2267,"end":2274},"obj":"Chemical"},{"id":"T180","span":{"begin":2409,"end":2421},"obj":"Chemical"},{"id":"T181","span":{"begin":2445,"end":2457},"obj":"Chemical"},{"id":"T182","span":{"begin":2513,"end":2520},"obj":"Chemical"},{"id":"T183","span":{"begin":2567,"end":2574},"obj":"Chemical"}],"attributes":[{"id":"A157","pred":"chebi_id","subj":"T157","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A158","pred":"chebi_id","subj":"T158","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A159","pred":"chebi_id","subj":"T159","obj":"http://purl.obolibrary.org/obo/CHEBI_30212"},{"id":"A160","pred":"chebi_id","subj":"T160","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A161","pred":"chebi_id","subj":"T161","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A162","pred":"chebi_id","subj":"T162","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A163","pred":"chebi_id","subj":"T163","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A164","pred":"chebi_id","subj":"T164","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A165","pred":"chebi_id","subj":"T165","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A166","pred":"chebi_id","subj":"T166","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A167","pred":"chebi_id","subj":"T167","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A168","pred":"chebi_id","subj":"T168","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A169","pred":"chebi_id","subj":"T169","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A170","pred":"chebi_id","subj":"T170","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A171","pred":"chebi_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/CHEBI_33942"},{"id":"A172","pred":"chebi_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/CHEBI_47013"},{"id":"A173","pred":"chebi_id","subj":"T173","obj":"http://purl.obolibrary.org/obo/CHEBI_73614"},{"id":"A174","pred":"chebi_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A175","pred":"chebi_id","subj":"T175","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A176","pred":"chebi_id","subj":"T176","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A177","pred":"chebi_id","subj":"T177","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A178","pred":"chebi_id","subj":"T178","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A179","pred":"chebi_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A180","pred":"chebi_id","subj":"T180","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A181","pred":"chebi_id","subj":"T181","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A182","pred":"chebi_id","subj":"T182","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A183","pred":"chebi_id","subj":"T183","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"Table 2 Comparison of protein sequences SARS-CoV-2 and SARS-CoV by Blastp.\nSARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%\n“-” represents no homologous protein. Query cover represents the percentage of the protein sequences that are participating in the comparison. Percent identity indicates the homology."}

    LitCovid-PD-GO-BP

    {"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T14","span":{"begin":1625,"end":1635},"obj":"http://purl.obolibrary.org/obo/GO_0004175"}],"text":"Table 2 Comparison of protein sequences SARS-CoV-2 and SARS-CoV by Blastp.\nSARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%\n“-” represents no homologous protein. Query cover represents the percentage of the protein sequences that are participating in the comparison. Percent identity indicates the homology."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T290","span":{"begin":0,"end":75},"obj":"Sentence"},{"id":"T291","span":{"begin":76,"end":96},"obj":"Sentence"},{"id":"T292","span":{"begin":97,"end":204},"obj":"Sentence"},{"id":"T293","span":{"begin":205,"end":286},"obj":"Sentence"},{"id":"T294","span":{"begin":287,"end":355},"obj":"Sentence"},{"id":"T295","span":{"begin":356,"end":421},"obj":"Sentence"},{"id":"T296","span":{"begin":422,"end":494},"obj":"Sentence"},{"id":"T297","span":{"begin":495,"end":589},"obj":"Sentence"},{"id":"T298","span":{"begin":590,"end":684},"obj":"Sentence"},{"id":"T299","span":{"begin":685,"end":752},"obj":"Sentence"},{"id":"T300","span":{"begin":753,"end":835},"obj":"Sentence"},{"id":"T301","span":{"begin":836,"end":899},"obj":"Sentence"},{"id":"T302","span":{"begin":900,"end":990},"obj":"Sentence"},{"id":"T303","span":{"begin":991,"end":1084},"obj":"Sentence"},{"id":"T304","span":{"begin":1085,"end":1174},"obj":"Sentence"},{"id":"T305","span":{"begin":1175,"end":1262},"obj":"Sentence"},{"id":"T306","span":{"begin":1263,"end":1333},"obj":"Sentence"},{"id":"T307","span":{"begin":1334,"end":1422},"obj":"Sentence"},{"id":"T308","span":{"begin":1423,"end":1467},"obj":"Sentence"},{"id":"T309","span":{"begin":1468,"end":1513},"obj":"Sentence"},{"id":"T310","span":{"begin":1514,"end":1612},"obj":"Sentence"},{"id":"T311","span":{"begin":1613,"end":1693},"obj":"Sentence"},{"id":"T312","span":{"begin":1694,"end":1798},"obj":"Sentence"},{"id":"T313","span":{"begin":1799,"end":1880},"obj":"Sentence"},{"id":"T314","span":{"begin":1881,"end":1954},"obj":"Sentence"},{"id":"T315","span":{"begin":1955,"end":2040},"obj":"Sentence"},{"id":"T316","span":{"begin":2041,"end":2119},"obj":"Sentence"},{"id":"T317","span":{"begin":2120,"end":2204},"obj":"Sentence"},{"id":"T318","span":{"begin":2205,"end":2300},"obj":"Sentence"},{"id":"T319","span":{"begin":2301,"end":2396},"obj":"Sentence"},{"id":"T320","span":{"begin":2397,"end":2483},"obj":"Sentence"},{"id":"T321","span":{"begin":2484,"end":2521},"obj":"Sentence"},{"id":"T322","span":{"begin":2522,"end":2626},"obj":"Sentence"},{"id":"T323","span":{"begin":2627,"end":2667},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 2 Comparison of protein sequences SARS-CoV-2 and SARS-CoV by Blastp.\nSARS-CoV-2 SARS-CoV\nProtein Name Accession Number Putative Function/Domain Accession Number Query Cover * Percent Identity\n1 nsp2 YP_009725298.1 nonstructural polyprotein pp1a ABF65834.1 100% 68.34%\n2 nsp3 YP_009725299.1 polyprotein orf1a AFR58698.1 100% 75.82%\n3 nsp4 YP_009725300.1 polyprotein 1a ARO76381.1 100% 80.80%\n4 nsp6 YP_009725302.1 nsp6-pp1a/pp1ab (TM3) NP_828864.1 98% 88.15%\n5 nsp7 YP_009725303.1 Chain A, Replicase Polyprotein 1ab, Light Chain 2AHM_A 100% 98.80%\n6 nsp8 YP_009725304.1 Chain E, Replicase Polyprotein 1ab, Heavy Chain 2AHM_E 100% 97.47%\n7 nsp9 YP_009725305.1 nsp9-pp1a/pp1ab NP_828867.1 100% 97.35%\n8 nsp10 YP_009725306.1 Chain A, Non-structural Protein 10 5C8S_A 100% 97.12%\n9 nsp11 YP_009725312.1 nsp11-pp1a NP_904321.1 100% 84.62%\n10 orf1a polyprotein YP_009725295.1 orf1a polyprotein (pp1a) NP_828850.1 100% 80.58%\n11 orf1ab polyprotein YP_009724389.1 orf1ab polyprotein (pp1ab) NP_828849.2 100% 86.26%\n12 orf3a protein YP_009724391.1 hypothetical protein sars3a NP_828852.2 100% 72.04%\n13 orf6 protein YP_009724394.1 hypothetical protein sars6 NP_828856.1 100% 68.85%\n14 orf7a protein YP_009724395.1 protein 8 ARO76387.1 100% 87.70%\n15 orf7b protein YP_009725296.1 hypothetical protein sars7b NP_849175.1 95% 85.37%\n16 orf8 protein YP_009724396.1 - - - -\n17 orf10 protein YP_009725255.1 - - - -\n18 2’-O-ribose methyltransferase YP_009725311.1 nsp16-pp1ab (2’-o-MT) NP_828873.2 99% 93.60%\n19 3C-like proteinase YP_009725301.1 polyprotein 1a ARO76381.1 100% 96.08%\n20 3’-to-5’ exonuclease YP_009725309.1 nsp14-pp1ab (nuclease ExoN homolog) NP_828871.1 100% 95.07%\n21 endoRNAse YP_009725310.1 nsp15-pp1ab (endoRNAse) NP_828872.1 100% 88.73%\n22 envelope protein YP_009724392.1 E protein APO40581.1 100% 94.74%\n23 helicase YP_009725308.1 nsp13-pp1ab (ZD, NTPase/HEL) NP_828870.1 100% 99.83%\n24 leader protein YP_009725297.1 nsp1-pp1a/pp1ab NP_828860.2 100% 84.44%\n25 membrane glycoprotein YP_009724393.1 matrix protein NP_828855.1 100% 90.54%\n26 nucleocapsid phosphoprotein YP_009724397.2 nucleocapsid protein ARO76389.1 100% 90.52%\n27 RNA-dependent RNA polymerase YP_009725307.1 nsp12-pp1ab (RdRp) NP_828869.1 100% 96.35%\n28 surface glycoprotein YP_009724390.1 spike glycoprotein ABD72985.1 100% 76.42%\n“-” represents no homologous protein. Query cover represents the percentage of the protein sequences that are participating in the comparison. Percent identity indicates the homology."}