PMC:7075884 / 30256-43788
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1091 | 892-899 | Gene | denotes | insulin | Gene:3630 |
| 1092 | 310-315 | Species | denotes | HSV-1 | Tax:10298 |
| 1093 | 408-421 | Species | denotes | HSV-1 (strain | Tax:10298 |
| 1094 | 683-688 | Species | denotes | Human | Tax:9606 |
| 1095 | 130-162 | Chemical | denotes | Dulbecco’s Modified Eagle Medium | |
| 1096 | 164-168 | Chemical | denotes | DMEM | |
| 1097 | 278-282 | Chemical | denotes | DMEM | |
| 1098 | 532-536 | Chemical | denotes | DMEM | |
| 1099 | 538-543 | Chemical | denotes | cDMEM | |
| 1100 | 570-581 | Chemical | denotes | L-glutamine | MESH:D005973 |
| 1101 | 592-602 | Chemical | denotes | penicillin | MESH:D010406 |
| 1102 | 603-615 | Chemical | denotes | streptomycin | MESH:D013307 |
| 1103 | 627-632 | Chemical | denotes | Hepes | MESH:D006531 |
| 1104 | 657-660 | Chemical | denotes | CO2 | MESH:D002245 |
| 1105 | 806-819 | Chemical | denotes | ascorbic acid | MESH:D001205 |
| 1106 | 845-855 | Chemical | denotes | gentamicin | MESH:D005839 |
| 1107 | 866-880 | Chemical | denotes | amphotericin B | MESH:D000666 |
| 1108 | 914-925 | Chemical | denotes | L-glutamine | MESH:D005973 |
| 1109 | 31-35 | CellLine | denotes | HEp2 | CVCL:1906 |
| 1110 | 217-224 | CellLine | denotes | HEK293T | CVCL:0063 |
| 1111 | 229-233 | CellLine | denotes | 293T | CVCL:0063 |
| 1118 | 980-984 | Species | denotes | HCMV | Tax:10359 |
| 1119 | 1115-1119 | Species | denotes | HCMV | Tax:10359 |
| 1120 | 1136-1147 | Chemical | denotes | ganciclovir | MESH:D015774 |
| 1121 | 1149-1152 | Chemical | denotes | GCV | MESH:D015774 |
| 1122 | 1161-1165 | Chemical | denotes | BI-6 | MESH:C118647 |
| 1123 | 1184-1187 | Chemical | denotes | GCV | MESH:D015774 |
| 1134 | 2517-2523 | Gene | denotes | dE1/E3 | Gene:45300 |
| 1135 | 1324-1328 | Species | denotes | ZIKV | Tax:64320 |
| 1136 | 1915-1921 | Species | denotes | stocks | Tax:3724 |
| 1137 | 2493-2515 | Species | denotes | Human Adenovirus Type5 | Tax:28285 |
| 1138 | 1619-1624 | Chemical | denotes | cDMEM | |
| 1139 | 1760-1777 | Chemical | denotes | cellulose acetate | MESH:C005062 |
| 1140 | 1471-1480 | Disease | denotes | infection | MESH:D007239 |
| 1141 | 1592-1601 | Disease | denotes | infection | MESH:D007239 |
| 1142 | 1797-1807 | Disease | denotes | infections | MESH:D007239 |
| 1143 | 1966-1974 | Disease | denotes | infected | MESH:D007239 |
| 1155 | 2598-2601 | Gene | denotes | C17 | Gene:54360 |
| 1156 | 2587-2590 | Gene | denotes | C15 | Gene:51316 |
| 1157 | 2580-2583 | Gene | denotes | C13 | Gene:3229 |
| 1158 | 2864-2870 | Species | denotes | stocks | Tax:3724 |
| 1159 | 2655-2657 | Chemical | denotes | GA | MESH:C112485 |
| 1160 | 2673-2681 | Chemical | denotes | methanol | MESH:D000432 |
| 1161 | 2685-2689 | Chemical | denotes | DMSO | MESH:D004121 |
| 1162 | 2730-2732 | Chemical | denotes | GA | MESH:C112485 |
| 1163 | 2821-2829 | Chemical | denotes | methanol | MESH:D000432 |
| 1164 | 2833-2837 | Chemical | denotes | DMSO | MESH:D004121 |
| 1165 | 2920-2922 | Chemical | denotes | GA | MESH:C112485 |
| 1175 | 3481-3485 | Gene | denotes | US11 | Gene:2703439 |
| 1176 | 3711-3718 | Gene | denotes | β-actin | Gene:728378 |
| 1177 | 2951-2956 | Species | denotes | HSV-1 | Tax:10298 |
| 1178 | 3875-3886 | Species | denotes | horseradish | Tax:3704 |
| 1179 | 3055-3058 | Chemical | denotes | PBS | MESH:D007854 |
| 1180 | 3304-3318 | Chemical | denotes | polyacrylamide | MESH:C016679 |
| 1181 | 3397-3406 | Chemical | denotes | Tween PBS | |
| 1182 | 3934-3991 | Chemical | denotes | 5-bromo-4-chloro-3-indolylphosphate–nitroblue tetrazolium | |
| 1183 | 3509-3515 | Disease | denotes | Cancer | MESH:D009369 |
| 1185 | 4133-4145 | Disease | denotes | Cytotoxicity | MESH:D064420 |
| 1188 | 4232-4234 | Chemical | denotes | GA | MESH:C112485 |
| 1189 | 4339-4346 | Chemical | denotes | DAL1025 | |
| 1197 | 4649-4659 | Chemical | denotes | penicillin | MESH:D010406 |
| 1198 | 4660-4672 | Chemical | denotes | streptomycin | MESH:D013307 |
| 1199 | 4796-4799 | Chemical | denotes | CO2 | MESH:D002245 |
| 1200 | 4932-4936 | Chemical | denotes | DPBS | MESH:C012939 |
| 1201 | 4952-4956 | Chemical | denotes | DMEM | |
| 1202 | 4547-4555 | Disease | denotes | infected | MESH:D007239 |
| 1203 | 4702-4711 | Disease | denotes | infection | MESH:D007239 |
| 1205 | 5731-5736 | Species | denotes | HSV-1 | Tax:10298 |
| 1219 | 6072-6077 | Species | denotes | HSV-1 | Tax:10298 |
| 1220 | 6479-6484 | Species | denotes | human | Tax:9606 |
| 1221 | 5750-5752 | Chemical | denotes | GA | MESH:C112485 |
| 1222 | 5904-5914 | Chemical | denotes | penicillin | MESH:D010406 |
| 1223 | 5915-5927 | Chemical | denotes | streptomycin | MESH:D013307 |
| 1224 | 6062-6066 | Chemical | denotes | DPBS | MESH:C012939 |
| 1225 | 6508-6512 | Chemical | denotes | DMEM | |
| 1226 | 6514-6548 | Chemical | denotes | Dulbecco’s Modified Eagle’s medium | |
| 1227 | 6582-6592 | Chemical | denotes | penicillin | MESH:D010406 |
| 1228 | 6593-6605 | Chemical | denotes | streptomycin | MESH:D013307 |
| 1229 | 6633-6636 | Chemical | denotes | CO2 | MESH:D002245 |
| 1230 | 6716-6724 | Chemical | denotes | methanol | MESH:D000432 |
| 1231 | 6812-6817 | Chemical | denotes | water | MESH:D014867 |
| 1233 | 6951-6955 | Species | denotes | ZIKV | Tax:64320 |
| 1248 | 8861-8866 | Gene | denotes | GAPDH | Gene:2597 |
| 1249 | 7464-7467 | Gene | denotes | C15 | Gene:51316 |
| 1250 | 6974-6978 | Species | denotes | ZIKV | Tax:64320 |
| 1251 | 7075-7079 | Species | denotes | ZIKV | Tax:64320 |
| 1252 | 7512-7516 | Species | denotes | ZIKV | Tax:64320 |
| 1253 | 7023-7025 | Chemical | denotes | GA | MESH:C112485 |
| 1254 | 7034-7038 | Chemical | denotes | DMSO | MESH:D004121 |
| 1255 | 7221-7225 | Chemical | denotes | DPBS | MESH:C012939 |
| 1256 | 7248-7252 | Chemical | denotes | DMEM | |
| 1257 | 7603-7606 | Chemical | denotes | AGM | |
| 1258 | 7624-7626 | Chemical | denotes | GA | MESH:C112485 |
| 1259 | 8507-8511 | Chemical | denotes | SDS2 | |
| 1260 | 7178-7186 | Disease | denotes | infected | MESH:D007239 |
| 1261 | 7498-7506 | Disease | denotes | infected | MESH:D007239 |
| 1269 | 9247-9252 | Gene | denotes | GAPDH | Gene:2597 |
| 1270 | 9030-9034 | Species | denotes | ZIKV | Tax:64320 |
| 1271 | 9057-9061 | Species | denotes | ZIKV | Tax:64320 |
| 1272 | 9096-9100 | Species | denotes | ZIKV | Tax:64320 |
| 1273 | 9163-9168 | Species | denotes | human | Tax:9606 |
| 1274 | 9211-9216 | Gene | denotes | GAPDH | Gene:2597 |
| 1275 | 9178-9183 | Gene | denotes | GAPDH | Gene:2597 |
| 1277 | 9310-9314 | Species | denotes | HCMV | Tax:10359 |
| 1290 | 9527-9531 | Species | denotes | HCMV | Tax:10359 |
| 1291 | 9625-9629 | Species | denotes | HCMV | Tax:10359 |
| 1292 | 10228-10230 | Chemical | denotes | GA | MESH:C112485 |
| 1293 | 10327-10329 | Chemical | denotes | GA | MESH:C112485 |
| 1294 | 10433-10437 | Chemical | denotes | DMSO | MESH:D004121 |
| 1295 | 10627-10629 | Chemical | denotes | GA | MESH:C112485 |
| 1296 | 9501-9509 | Disease | denotes | infected | MESH:D007239 |
| 1297 | 9673-9681 | Disease | denotes | infected | MESH:D007239 |
| 1298 | 10115-10130 | Disease | denotes | Viral infection | MESH:D001102 |
| 1299 | 9323-9326 | CellLine | denotes | HFF | CVCL:3285 |
| 1300 | 9714-9717 | CellLine | denotes | HFF | CVCL:3285 |
| 1301 | 9786-9789 | CellLine | denotes | HFF | CVCL:3285 |
| 1303 | 10884-10888 | Species | denotes | HCMV | Tax:10359 |
| 1307 | 10921-10925 | Species | denotes | HCMV | Tax:10359 |
| 1308 | 11099-11103 | Species | denotes | HCMV | Tax:10359 |
| 1309 | 10926-10934 | Disease | denotes | infected | MESH:D007239 |
| 1311 | 11278-11287 | Disease | denotes | Infection | MESH:D007239 |
| 1319 | 11505-11512 | Gene | denotes | dE1/E3) | Gene:45300 |
| 1320 | 11606-11609 | Gene | denotes | C15 | Gene:51316 |
| 1321 | 11397-11400 | Gene | denotes | C15 | Gene:51316 |
| 1322 | 11480-11503 | Species | denotes | human adenovirus type 5 | Tax:28285 |
| 1323 | 11544-11549 | Species | denotes | HSV-1 | Tax:10298 |
| 1324 | 11406-11410 | Chemical | denotes | DMSO | MESH:D004121 |
| 1325 | 11626-11635 | Disease | denotes | Infection | MESH:D007239 |
| 1333 | 11762-11766 | Species | denotes | ZIKV | Tax:64320 |
| 1334 | 11773-11777 | Species | denotes | EBOV | Tax:1570291 |
| 1335 | 11784-11788 | Species | denotes | VEEV | Tax:11036 |
| 1336 | 11790-11793 | Species | denotes | VSV | Tax:11276 |
| 1337 | 11795-11798 | Species | denotes | SFV | Tax:11033 |
| 1338 | 11803-11806 | Species | denotes | EBV | Tax:10376 |
| 1339 | 11779-11782 | Disease | denotes | IVA | MESH:C538167 |
| 1355 | 12576-12579 | Gene | denotes | C17 | Gene:54360 |
| 1356 | 12566-12569 | Gene | denotes | C15 | Gene:51316 |
| 1357 | 12559-12562 | Gene | denotes | C13 | Gene:3229 |
| 1358 | 12443-12446 | Gene | denotes | C15 | Gene:51316 |
| 1359 | 12385-12388 | Gene | denotes | C15 | Gene:51316 |
| 1360 | 12251-12255 | Species | denotes | EBOV | Tax:1570291 |
| 1361 | 12293-12297 | Species | denotes | VEEV | Tax:11036 |
| 1362 | 12342-12346 | Species | denotes | EBOV | Tax:1570291 |
| 1363 | 12269-12272 | Species | denotes | SFV | Tax:11033 |
| 1364 | 12283-12286 | Species | denotes | IAV | Tax:11320 |
| 1365 | 12301-12304 | Species | denotes | VSV | Tax:11276 |
| 1366 | 12310-12313 | Species | denotes | EBV | Tax:10376 |
| 1367 | 11987-11997 | Chemical | denotes | Calcein-AM | MESH:C085925 |
| 1368 | 12064-12094 | Chemical | denotes | 7-amino-4-chloromethylcoumarin | MESH:C453681 |
| 1369 | 12096-12100 | Chemical | denotes | CMAC | |
| 1372 | 12609-12613 | Species | denotes | HCMV | Tax:10359 |
| 1373 | 12690-12693 | Chemical | denotes | BI6 | MESH:C118647 |
| 1375 | 13056-13060 | Species | denotes | HCMV | Tax:10359 |
| 1377 | 13288-13292 | Species | denotes | ZIKV | Tax:64320 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T241 | 9-14 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T242 | 36-41 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T243 | 204-209 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T244 | 235-240 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T245 | 477-482 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T246 | 572-581 | Body_part | denotes | glutamine | http://purl.org/sig/ont/fma/fma82752 |
| T247 | 689-699 | Body_part | denotes | Astrocytes | http://purl.org/sig/ont/fma/fma54537 |
| T248 | 732-741 | Body_part | denotes | Astrocyte | http://purl.org/sig/ont/fma/fma54537 |
| T249 | 892-899 | Body_part | denotes | insulin | http://purl.org/sig/ont/fma/fma83365 |
| T250 | 916-925 | Body_part | denotes | glutamine | http://purl.org/sig/ont/fma/fma82752 |
| T251 | 1014-1018 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T252 | 1282-1289 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T253 | 1440-1445 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T254 | 1760-1769 | Body_part | denotes | cellulose | http://purl.org/sig/ont/fma/fma82748 |
| T255 | 1856-1861 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T256 | 1980-1985 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T257 | 2157-2165 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T258 | 2211-2219 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T259 | 2304-2307 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T260 | 2849-2854 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T261 | 2958-2963 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T262 | 3178-3190 | Body_part | denotes | g of protein | http://purl.org/sig/ont/fma/fma61788 |
| T263 | 3183-3190 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T264 | 3237-3245 | Body_part | denotes | Proteins | http://purl.org/sig/ont/fma/fma67257 |
| T265 | 3469-3477 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T266 | 3552-3560 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T267 | 3627-3635 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T268 | 3699-3707 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T269 | 3713-3718 | Body_part | denotes | actin | http://purl.org/sig/ont/fma/fma67843 |
| T270 | 3818-3826 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T271 | 3899-3906 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T272 | 4152-4157 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T273 | 4245-4249 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T274 | 4519-4524 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T275 | 4730-4734 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T276 | 4809-4814 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T277 | 4880-4884 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T278 | 4902-4907 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T279 | 4989-4994 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T280 | 5044-5049 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T281 | 5223-5227 | Body_part | denotes | milk | http://purl.org/sig/ont/fma/fma62100 |
| T282 | 5243-5248 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T283 | 5354-5359 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T284 | 5400-5404 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T285 | 5801-5806 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T286 | 5891-5896 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T287 | 6029-6034 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T288 | 6128-6133 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T289 | 6305-6310 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T290 | 6398-6403 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T291 | 6441-6446 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T292 | 6485-6490 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T293 | 6689-6694 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T294 | 6964-6968 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T295 | 7104-7109 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T296 | 7187-7192 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T297 | 7348-7352 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T298 | 7364-7367 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T299 | 7654-7658 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T300 | 7743-7747 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T301 | 7801-7806 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T302 | 7843-7846 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T303 | 7891-7894 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T304 | 8024-8027 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T305 | 8154-8157 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T306 | 8309-8313 | Body_part | denotes | Gene | http://purl.org/sig/ont/fma/fma74402 |
| T307 | 8767-8770 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T308 | 8965-8968 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T309 | 9495-9500 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T310 | 9682-9687 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T311 | 9755-9760 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T312 | 10199-10204 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T313 | 10889-10892 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T314 | 11005-11008 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T315 | 11060-11065 | Body_part | denotes | Blood | http://purl.org/sig/ont/fma/fma9670 |
| T316 | 11104-11107 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T317 | 11176-11179 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T318 | 11333-11338 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T319 | 11424-11429 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T320 | 11679-11683 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T321 | 11684-11688 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T322 | 11734-11738 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T323 | 11739-11743 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T324 | 11768-11771 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T325 | 11829-11837 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T326 | 11913-11927 | Body_part | denotes | Nucleated cell | http://purl.org/sig/ont/fma/fma67513 |
| T327 | 11923-11927 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T328 | 11928-11932 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T329 | 12023-12028 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T330 | 12051-12058 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T331 | 12125-12130 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T332 | 12203-12210 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T333 | 12373-12380 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T334 | 12497-12505 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T335 | 13061-13064 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T11 | 204-209 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T12 | 5223-5227 | Body_part | denotes | milk | http://purl.obolibrary.org/obo/UBERON_0001913 |
| T13 | 5277-5281 | Body_part | denotes | tube | http://purl.obolibrary.org/obo/UBERON_0000025 |
| T14 | 5891-5896 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T15 | 6485-6490 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T16 | 11060-11065 | Body_part | denotes | Blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T76 | 757-760 | Disease | denotes | AGM | http://purl.obolibrary.org/obo/MONDO_0011096 |
| T77 | 1471-1480 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T78 | 1592-1601 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T79 | 1797-1807 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T80 | 2060-2062 | Disease | denotes | BD | http://purl.obolibrary.org/obo/MONDO_0007191 |
| T81 | 2430-2432 | Disease | denotes | BD | http://purl.obolibrary.org/obo/MONDO_0007191 |
| T82 | 3509-3515 | Disease | denotes | Cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T83 | 4702-4711 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T84 | 5215-5222 | Disease | denotes | sterile | http://purl.obolibrary.org/obo/MONDO_0005047 |
| T85 | 5624-5631 | Disease | denotes | sterile | http://purl.obolibrary.org/obo/MONDO_0005047 |
| T86 | 7603-7606 | Disease | denotes | AGM | http://purl.obolibrary.org/obo/MONDO_0011096 |
| T87 | 10115-10130 | Disease | denotes | Viral infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T88 | 10121-10130 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T89 | 11278-11287 | Disease | denotes | Infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T90 | 11626-11635 | Disease | denotes | Infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T91 | 11779-11782 | Disease | denotes | IVA | http://purl.obolibrary.org/obo/MONDO_0009475 |
| T92 | 11995-11997 | Disease | denotes | AM | http://purl.obolibrary.org/obo/MONDO_0020320 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T460 | 9-14 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T461 | 16-23 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T462 | 31-35 | http://purl.obolibrary.org/obo/CLO_0003707 | denotes | HEp2 |
| T463 | 31-35 | http://purl.obolibrary.org/obo/CLO_0050927 | denotes | HEp2 |
| T464 | 36-41 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T465 | 111-113 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
| T466 | 229-233 | http://purl.obolibrary.org/obo/CLO_0050894 | denotes | 293T |
| T467 | 229-233 | http://purl.obolibrary.org/obo/CLO_0051650 | denotes | 293T |
| T468 | 229-233 | http://purl.obolibrary.org/obo/CLO_0052052 | denotes | 293T |
| T469 | 235-240 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T470 | 326-327 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T471 | 404-407 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T472 | 431-432 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T473 | 472-476 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T474 | 472-476 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T475 | 477-482 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T476 | 683-688 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T477 | 689-699 | http://purl.obolibrary.org/obo/CL_0000127 | denotes | Astrocytes |
| T478 | 732-741 | http://purl.obolibrary.org/obo/CL_0000127 | denotes | Astrocyte |
| T479 | 879-880 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T480 | 892-899 | http://purl.obolibrary.org/obo/PR_000009054 | denotes | insulin |
| T481 | 1014-1018 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T482 | 1317-1322 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T483 | 1435-1439 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T484 | 1435-1439 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T485 | 1440-1445 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T486 | 1481-1485 | http://purl.obolibrary.org/obo/CLO_0001757 | denotes | at 1 |
| T487 | 1734-1735 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T488 | 1778-1786 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T489 | 1851-1855 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T490 | 1851-1855 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T491 | 1856-1861 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T492 | 1909-1914 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T493 | 1923-1928 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T494 | 1944-1949 | http://purl.obolibrary.org/obo/CLO_0009985 | denotes | focus |
| T495 | 1975-1979 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T496 | 1975-1979 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T497 | 1980-1985 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T498 | 2138-2139 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T499 | 2140-2145 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T500 | 2249-2260 | http://purl.obolibrary.org/obo/CLO_0002662 | denotes | D1–4G2-4-15 |
| T501 | 2298-2303 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T502 | 2493-2498 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T503 | 2521-2523 | http://purl.obolibrary.org/obo/CLO_0002861 | denotes | E3 |
| T504 | 2598-2603 | http://purl.obolibrary.org/obo/CLO_0002099 | denotes | C17:1 |
| T505 | 2640-2642 | http://purl.obolibrary.org/obo/CLO_0009141 | denotes | St |
| T506 | 2640-2642 | http://purl.obolibrary.org/obo/CLO_0050980 | denotes | St |
| T507 | 2651-2653 | http://purl.obolibrary.org/obo/CLO_0007815 | denotes | MO |
| T508 | 2693-2694 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T509 | 2849-2854 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T510 | 2955-2963 | http://purl.obolibrary.org/obo/CLO_0001757 | denotes | 1, cells |
| T511 | 3452-3457 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T512 | 3535-3540 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T513 | 3583-3584 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T514 | 3610-3615 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T515 | 3657-3658 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T516 | 3682-3687 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T517 | 3739-3740 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T518 | 3759-3768 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | Membranes |
| T519 | 3848-3868 | http://purl.obolibrary.org/obo/PR_000023540 | denotes | alkaline phosphatase |
| T520 | 4146-4151 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T521 | 4152-4157 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T522 | 4173-4175 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T523 | 4245-4249 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T524 | 4369-4374 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T525 | 4411-4412 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T526 | 4514-4518 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T527 | 4514-4518 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T528 | 4519-4524 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T529 | 4684-4685 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T530 | 4730-4734 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T531 | 4809-4814 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T532 | 4829-4834 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T533 | 4880-4884 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T534 | 4897-4901 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T535 | 4897-4901 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T536 | 4902-4907 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T537 | 4989-4994 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T538 | 5044-5049 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T539 | 5243-5248 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T540 | 5269-5273 | http://purl.obolibrary.org/obo/CLO_0001557 | denotes | a 15 |
| T541 | 5277-5281 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tube |
| T542 | 5307-5312 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T543 | 5349-5353 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T544 | 5349-5353 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T545 | 5354-5359 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T546 | 5400-5404 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T547 | 5481-5482 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T548 | 5579-5584 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T549 | 5796-5800 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T550 | 5796-5800 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T551 | 5801-5806 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T552 | 6029-6034 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T553 | 6068-6071 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T554 | 6128-6133 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T555 | 6300-6304 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T556 | 6300-6304 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T557 | 6305-6310 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T558 | 6338-6339 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T559 | 6368-6373 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T560 | 6398-6403 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T561 | 6441-6446 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T562 | 6479-6484 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T563 | 6689-6694 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T564 | 6964-6968 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T565 | 7099-7103 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T566 | 7099-7103 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T567 | 7104-7109 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T568 | 7187-7192 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T569 | 7318-7320 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T570 | 7348-7352 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T571 | 7654-7658 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T572 | 7743-7747 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T573 | 7801-7806 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T574 | 7886-7888 | http://purl.obolibrary.org/obo/CLO_0007622 | denotes | MD |
| T575 | 7916-7917 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T576 | 8268-8272 | http://purl.obolibrary.org/obo/CLO_0001564 | denotes | a 20 |
| T577 | 8268-8272 | http://purl.obolibrary.org/obo/CLO_0050194 | denotes | a 20 |
| T578 | 8309-8313 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Gene |
| T579 | 8601-8603 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T580 | 9108-9113 | http://purl.obolibrary.org/obo/CLO_0001417 | denotes | 5′/56 |
| T581 | 9163-9168 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T582 | 9260-9265 | http://purl.obolibrary.org/obo/CLO_0001417 | denotes | 5′/56 |
| T583 | 9323-9326 | http://purl.obolibrary.org/obo/CLO_0052986 | denotes | HFF |
| T584 | 9495-9500 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T585 | 9593-9598 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T586 | 9682-9687 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T587 | 9714-9717 | http://purl.obolibrary.org/obo/CLO_0052986 | denotes | HFF |
| T588 | 9755-9760 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T589 | 9786-9789 | http://purl.obolibrary.org/obo/CLO_0052986 | denotes | HFF |
| T590 | 9978-9983 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T591 | 10046-10049 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T592 | 10108-10113 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T593 | 10199-10204 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T594 | 10441-10442 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T595 | 10654-10655 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T596 | 11060-11065 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | Blood |
| T597 | 11060-11065 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | Blood |
| T598 | 11130-11131 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T599 | 11291-11294 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T600 | 11306-11313 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T601 | 11328-11332 | http://purl.obolibrary.org/obo/CLO_0009524 | denotes | Vero |
| T602 | 11328-11332 | http://purl.obolibrary.org/obo/CLO_0050515 | denotes | Vero |
| T603 | 11333-11338 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T604 | 11424-11429 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T605 | 11456-11457 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T606 | 11480-11485 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T607 | 11509-11511 | http://purl.obolibrary.org/obo/CLO_0002861 | denotes | E3 |
| T608 | 11524-11527 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T609 | 11532-11535 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T610 | 11540-11543 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T611 | 11550-11555 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T612 | 11577-11578 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T613 | 11679-11683 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T614 | 11684-11688 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T615 | 11734-11738 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T616 | 11739-11743 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T617 | 11889-11891 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T618 | 11889-11891 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T619 | 11923-11927 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T620 | 11928-11932 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T621 | 12023-12028 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T622 | 12125-12130 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T623 | 12273-12275 | http://purl.obolibrary.org/obo/CLO_0002857 | denotes | E1 |
| T624 | 12276-12278 | http://purl.obolibrary.org/obo/CLO_0002860 | denotes | E2 |
| T625 | 12483-12489 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T626 | 12576-12581 | http://purl.obolibrary.org/obo/CLO_0002099 | denotes | C17:1 |
| T627 | 12933-12938 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T628 | 12975-12976 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T629 | 13174-13175 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T630 | 13180-13186 | http://purl.obolibrary.org/obo/UBERON_0002415 | denotes | tailed |
| T631 | 13189-13193 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T632 | 13337-13343 | http://purl.obolibrary.org/obo/UBERON_0002415 | denotes | tailed |
| T633 | 13356-13360 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T634 | 13463-13464 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T635 | 13493-13494 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T765 | 28-30 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T768 | 111-113 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
| T769 | 570-581 | Chemical | denotes | L-glutamine | http://purl.obolibrary.org/obo/CHEBI_18050|http://purl.obolibrary.org/obo/CHEBI_30011|http://purl.obolibrary.org/obo/CHEBI_58359 |
| T772 | 572-581 | Chemical | denotes | glutamine | http://purl.obolibrary.org/obo/CHEBI_28300 |
| T773 | 592-602 | Chemical | denotes | penicillin | http://purl.obolibrary.org/obo/CHEBI_17334|http://purl.obolibrary.org/obo/CHEBI_51356 |
| T775 | 603-615 | Chemical | denotes | streptomycin | http://purl.obolibrary.org/obo/CHEBI_17076|http://purl.obolibrary.org/obo/CHEBI_58007 |
| T777 | 627-632 | Chemical | denotes | Hepes | http://purl.obolibrary.org/obo/CHEBI_42334 |
| T778 | 633-639 | Chemical | denotes | buffer | http://purl.obolibrary.org/obo/CHEBI_35225 |
| T779 | 657-660 | Chemical | denotes | CO2 | http://purl.obolibrary.org/obo/CHEBI_16526 |
| T780 | 806-819 | Chemical | denotes | ascorbic acid | http://purl.obolibrary.org/obo/CHEBI_22652|http://purl.obolibrary.org/obo/CHEBI_29073 |
| T782 | 815-819 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T783 | 866-880 | Chemical | denotes | amphotericin B | http://purl.obolibrary.org/obo/CHEBI_2682 |
| T784 | 892-899 | Chemical | denotes | insulin | http://purl.obolibrary.org/obo/CHEBI_145810 |
| T785 | 914-925 | Chemical | denotes | L-glutamine | http://purl.obolibrary.org/obo/CHEBI_18050|http://purl.obolibrary.org/obo/CHEBI_30011|http://purl.obolibrary.org/obo/CHEBI_58359 |
| T788 | 916-925 | Chemical | denotes | glutamine | http://purl.obolibrary.org/obo/CHEBI_28300 |
| T789 | 1120-1134 | Chemical | denotes | antiviral drug | http://purl.obolibrary.org/obo/CHEBI_36044 |
| T790 | 1120-1129 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
| T791 | 1130-1134 | Chemical | denotes | drug | http://purl.obolibrary.org/obo/CHEBI_23888 |
| T792 | 1136-1147 | Chemical | denotes | ganciclovir | http://purl.obolibrary.org/obo/CHEBI_465284 |
| T793 | 1282-1289 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T794 | 1413-1415 | Chemical | denotes | VA | http://purl.obolibrary.org/obo/CHEBI_75008 |
| T795 | 1744-1754 | Chemical | denotes | surfactant | http://purl.obolibrary.org/obo/CHEBI_35195 |
| T796 | 1760-1777 | Chemical | denotes | cellulose acetate | http://purl.obolibrary.org/obo/CHEBI_145232 |
| T797 | 1770-1777 | Chemical | denotes | acetate | http://purl.obolibrary.org/obo/CHEBI_30089|http://purl.obolibrary.org/obo/CHEBI_47622 |
| T799 | 2196-2201 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
| T800 | 2211-2219 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T801 | 2310-2312 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T804 | 2364-2366 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T805 | 2577-2579 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T808 | 2580-2585 | Chemical | denotes | C13:0 | http://purl.obolibrary.org/obo/CHEBI_45919 |
| T809 | 2587-2592 | Chemical | denotes | C15:1 | http://purl.obolibrary.org/obo/CHEBI_75088 |
| T810 | 2587-2590 | Chemical | denotes | C15 | http://purl.obolibrary.org/obo/CHEBI_42504 |
| T811 | 2598-2603 | Chemical | denotes | C17:1 | http://purl.obolibrary.org/obo/CHEBI_36001 |
| T812 | 2655-2657 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T815 | 2673-2681 | Chemical | denotes | methanol | http://purl.obolibrary.org/obo/CHEBI_17790 |
| T816 | 2685-2689 | Chemical | denotes | DMSO | http://purl.obolibrary.org/obo/CHEBI_28262 |
| T817 | 2730-2732 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T820 | 2821-2829 | Chemical | denotes | methanol | http://purl.obolibrary.org/obo/CHEBI_17790 |
| T821 | 2833-2837 | Chemical | denotes | DMSO | http://purl.obolibrary.org/obo/CHEBI_28262 |
| T822 | 2920-2922 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T825 | 3091-3097 | Chemical | denotes | buffer | http://purl.obolibrary.org/obo/CHEBI_35225 |
| T826 | 3102-3121 | Chemical | denotes | protease inhibitors | http://purl.obolibrary.org/obo/CHEBI_37670|http://purl.obolibrary.org/obo/CHEBI_60258 |
| T828 | 3111-3121 | Chemical | denotes | inhibitors | http://purl.obolibrary.org/obo/CHEBI_35222 |
| T829 | 3183-3190 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T830 | 3304-3318 | Chemical | denotes | polyacrylamide | http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766 |
| T833 | 3353-3367 | Chemical | denotes | nitrocellulose | http://purl.obolibrary.org/obo/CHEBI_53325 |
| T834 | 3899-3906 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T835 | 3936-3941 | Chemical | denotes | bromo | http://purl.obolibrary.org/obo/CHEBI_22927|http://purl.obolibrary.org/obo/CHEBI_47265 |
| T837 | 3944-3950 | Chemical | denotes | chloro | http://purl.obolibrary.org/obo/CHEBI_47853 |
| T838 | 4055-4063 | Chemical | denotes | reagents | http://purl.obolibrary.org/obo/CHEBI_33893 |
| T839 | 4232-4234 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T842 | 4649-4659 | Chemical | denotes | penicillin | http://purl.obolibrary.org/obo/CHEBI_17334|http://purl.obolibrary.org/obo/CHEBI_51356 |
| T844 | 4660-4672 | Chemical | denotes | streptomycin | http://purl.obolibrary.org/obo/CHEBI_17076|http://purl.obolibrary.org/obo/CHEBI_58007 |
| T846 | 4796-4799 | Chemical | denotes | CO2 | http://purl.obolibrary.org/obo/CHEBI_16526 |
| T847 | 5750-5752 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T850 | 5904-5914 | Chemical | denotes | penicillin | http://purl.obolibrary.org/obo/CHEBI_17334|http://purl.obolibrary.org/obo/CHEBI_51356 |
| T852 | 5915-5927 | Chemical | denotes | streptomycin | http://purl.obolibrary.org/obo/CHEBI_17076|http://purl.obolibrary.org/obo/CHEBI_58007 |
| T854 | 6582-6592 | Chemical | denotes | penicillin | http://purl.obolibrary.org/obo/CHEBI_17334|http://purl.obolibrary.org/obo/CHEBI_51356 |
| T856 | 6593-6605 | Chemical | denotes | streptomycin | http://purl.obolibrary.org/obo/CHEBI_17076|http://purl.obolibrary.org/obo/CHEBI_58007 |
| T858 | 6633-6636 | Chemical | denotes | CO2 | http://purl.obolibrary.org/obo/CHEBI_16526 |
| T859 | 6716-6724 | Chemical | denotes | methanol | http://purl.obolibrary.org/obo/CHEBI_17790 |
| T860 | 6812-6817 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
| T861 | 7023-7025 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T864 | 7034-7038 | Chemical | denotes | DMSO | http://purl.obolibrary.org/obo/CHEBI_28262 |
| T865 | 7461-7463 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T868 | 7464-7469 | Chemical | denotes | C15:1 | http://purl.obolibrary.org/obo/CHEBI_75088 |
| T869 | 7464-7467 | Chemical | denotes | C15 | http://purl.obolibrary.org/obo/CHEBI_42504 |
| T870 | 7624-7626 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T873 | 7734-7742 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
| T874 | 7787-7789 | Chemical | denotes | WI | http://purl.obolibrary.org/obo/CHEBI_141448 |
| T875 | 7886-7888 | Chemical | denotes | MD | http://purl.obolibrary.org/obo/CHEBI_74699 |
| T876 | 8024-8027 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T877 | 8276-8284 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
| T878 | 8384-8389 | Chemical | denotes | probe | http://purl.obolibrary.org/obo/CHEBI_50406 |
| T879 | 8906-8911 | Chemical | denotes | probe | http://purl.obolibrary.org/obo/CHEBI_50406 |
| T880 | 8965-8968 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T881 | 9101-9106 | Chemical | denotes | probe | http://purl.obolibrary.org/obo/CHEBI_50406 |
| T882 | 9253-9258 | Chemical | denotes | probe | http://purl.obolibrary.org/obo/CHEBI_50406 |
| T883 | 10228-10230 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T886 | 10327-10329 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T889 | 10433-10437 | Chemical | denotes | DMSO | http://purl.obolibrary.org/obo/CHEBI_28262 |
| T890 | 10627-10629 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T893 | 10889-10892 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T894 | 11005-11008 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T895 | 11094-11096 | Chemical | denotes | WI | http://purl.obolibrary.org/obo/CHEBI_141448 |
| T896 | 11104-11107 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T897 | 11176-11179 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T898 | 11394-11396 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T901 | 11397-11402 | Chemical | denotes | C15:1 | http://purl.obolibrary.org/obo/CHEBI_75088 |
| T902 | 11397-11400 | Chemical | denotes | C15 | http://purl.obolibrary.org/obo/CHEBI_42504 |
| T903 | 11406-11410 | Chemical | denotes | DMSO | http://purl.obolibrary.org/obo/CHEBI_28262 |
| T904 | 11603-11605 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T907 | 11606-11611 | Chemical | denotes | C15:1 | http://purl.obolibrary.org/obo/CHEBI_75088 |
| T908 | 11606-11609 | Chemical | denotes | C15 | http://purl.obolibrary.org/obo/CHEBI_42504 |
| T909 | 11829-11837 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T910 | 11889-11891 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T911 | 12014-12022 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T912 | 12051-12058 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T913 | 12066-12071 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T914 | 12142-12146 | Chemical | denotes | dyes | http://purl.obolibrary.org/obo/CHEBI_37958 |
| T915 | 12203-12210 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T916 | 12347-12349 | Chemical | denotes | GP | http://purl.obolibrary.org/obo/CHEBI_70744 |
| T917 | 12373-12380 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T918 | 12385-12390 | Chemical | denotes | C15:1 | http://purl.obolibrary.org/obo/CHEBI_75088 |
| T919 | 12385-12388 | Chemical | denotes | C15 | http://purl.obolibrary.org/obo/CHEBI_42504 |
| T920 | 12391-12393 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T923 | 12443-12448 | Chemical | denotes | C15:1 | http://purl.obolibrary.org/obo/CHEBI_75088 |
| T924 | 12443-12446 | Chemical | denotes | C15 | http://purl.obolibrary.org/obo/CHEBI_42504 |
| T925 | 12449-12451 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T928 | 12497-12505 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T929 | 12556-12558 | Chemical | denotes | GA | http://purl.obolibrary.org/obo/CHEBI_5206|http://purl.obolibrary.org/obo/CHEBI_73855|http://purl.obolibrary.org/obo/CHEBI_5354 |
| T932 | 12559-12564 | Chemical | denotes | C13:0 | http://purl.obolibrary.org/obo/CHEBI_45919 |
| T933 | 12566-12571 | Chemical | denotes | C15:1 | http://purl.obolibrary.org/obo/CHEBI_75088 |
| T934 | 12566-12569 | Chemical | denotes | C15 | http://purl.obolibrary.org/obo/CHEBI_42504 |
| T935 | 12576-12581 | Chemical | denotes | C17:1 | http://purl.obolibrary.org/obo/CHEBI_36001 |
| T936 | 13061-13064 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T140 | 742-748 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | Growth |
| T141 | 3085-3090 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | lysis |
| T142 | 3857-3868 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatase |
| T143 | 6653-6662 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
| T144 | 7743-7761 | http://purl.obolibrary.org/obo/GO_0008283 | denotes | cell proliferation |
| T145 | 7960-7966 | http://purl.obolibrary.org/obo/GO_0004530 | denotes | DNaseI |
| T146 | 8061-8067 | http://purl.obolibrary.org/obo/GO_0004530 | denotes | DNaseI |
| T147 | 8309-8324 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | Gene Expression |
| T148 | 10115-10130 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | Viral infection |
| T149 | 11684-11695 | http://purl.obolibrary.org/obo/GO_0140253 | denotes | cell fusion |
| T150 | 11684-11695 | http://purl.obolibrary.org/obo/GO_0045026 | denotes | cell fusion |
| T151 | 11684-11695 | http://purl.obolibrary.org/obo/GO_0000768 | denotes | cell fusion |
| T152 | 11684-11695 | http://purl.obolibrary.org/obo/GO_0000747 | denotes | cell fusion |
| T153 | 11734-11750 | http://purl.obolibrary.org/obo/GO_0140253 | denotes | cell-cell fusion |
| T154 | 11734-11750 | http://purl.obolibrary.org/obo/GO_0045026 | denotes | cell-cell fusion |
| T155 | 11739-11750 | http://purl.obolibrary.org/obo/GO_0000768 | denotes | cell fusion |
| T156 | 11739-11750 | http://purl.obolibrary.org/obo/GO_0000747 | denotes | cell fusion |
| T157 | 11923-11939 | http://purl.obolibrary.org/obo/GO_0140253 | denotes | cell-cell fusion |
| T158 | 11923-11939 | http://purl.obolibrary.org/obo/GO_0045026 | denotes | cell-cell fusion |
| T159 | 11928-11939 | http://purl.obolibrary.org/obo/GO_0000768 | denotes | cell fusion |
| T160 | 11928-11939 | http://purl.obolibrary.org/obo/GO_0000747 | denotes | cell fusion |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T214 | 0-7 | Sentence | denotes | Methods |
| T215 | 9-30 | Sentence | denotes | Cells, viruses and GA |
| T216 | 31-216 | Sentence | denotes | HEp2 cells, obtained from the American Type Culture Collection (ATCC Rockville, MD), were grown in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 5% fetal bovine serum (FBS). |
| T217 | 217-309 | Sentence | denotes | HEK293T/17 (293T) cells obtained from the ATCC were grown in DMEM supplemented with 10% FBS. |
| T218 | 310-403 | Sentence | denotes | HSV-1 strain F, a limited-passage isolate, is the prototype strain used in this laboratory28. |
| T219 | 404-471 | Sentence | denotes | GFP-HSV-1 (strain 17), was a generous gift from Dr. Peter O’Hare29. |
| T220 | 472-661 | Sentence | denotes | Vero cells obtained from the ATCC were cultured in complete DMEM (cDMEM) containing 10% FBS, 2 mM L-glutamine, 100 U/mL penicillin/streptomycin, and 10 mM Hepes buffer at 37 °C with 5% CO2. |
| T221 | 662-926 | Sentence | denotes | Fetal-derived Normal Human Astrocytes (NHA, Lonza) were maintained in Astrocyte Growth Medium (AGM, Lonza) supplemented with 0.3% FBS, 30 µl/mL ascorbic acid, 1 µl/mL rhEGF, 30 µg/mL gentamicin, 15 μg/mL amphotericin B, 2.5 µl/mL insulin, and 10 µl/mL L-glutamine. |
| T222 | 927-979 | Sentence | denotes | Early passages (1–4) were used in these experiments. |
| T223 | 980-1078 | Sentence | denotes | HCMV studies were performed using cell-associated low-passage clinical isolates CH1914 and BI-615. |
| T224 | 1079-1188 | Sentence | denotes | CH19 is resistant to the first-line HCMV antiviral drug, ganciclovir (GCV), while BI-6 is susceptible to GCV. |
| T225 | 1189-1323 | Sentence | denotes | Additional experiments were performed using CMVPT30-GFP16, which expresses green fluorescent protein and produces extracellular virus. |
| T226 | 1324-1546 | Sentence | denotes | ZIKV strain PRVABC59 obtained from the American Type Culture Collection (ATCC; Manassas, VA) was propagated in Vero cells grown in T-150 flasks by infection at 1:50 dilution of viral stock (MOI 0.25) in the absence of FBS. |
| T227 | 1547-1625 | Sentence | denotes | The medium was removed and replaced 6 h post-infection (hpi) with fresh cDMEM. |
| T228 | 1626-1787 | Sentence | denotes | Supernatant was collected at 72 hpi, clarified by centrifugation at 350 × g for 5 min, and filtered through a 0.45-μm surfactant-free cellulose acetate membrane. |
| T229 | 1788-1922 | Sentence | denotes | For mock infections, supernatant was collected from uninfected Vero cells and prepared by the same protocol used to make virus stocks. |
| T230 | 1923-1956 | Sentence | denotes | Virus was titered by focus assay. |
| T231 | 1957-2331 | Sentence | denotes | Briefly, infected Vero cells, 24 hpi were fixed and permeabilized using Cytofix/Cytoperm Solution Kit (BD Biosciences) according to the manufacturer’s instructions and stained with a mouse monoclonal antibody (mAb) specific for flavivirus group envelope proteins (1:250; EMD Millipore; clone D1–4G2-4-15) followed by incubation with an anti-mouse IgG - PE (1:1000 dilution). |
| T232 | 2332-2492 | Sentence | denotes | Samples were run through an LSR II flow cytometer and data were collected with FACSDiva software (BD Biosciences) and analyzed using FlowJo Software (TreeStar). |
| T233 | 2493-2530 | Sentence | denotes | Human Adenovirus Type5 (dE1/E3), Cat. |
| T234 | 2531-2535 | Sentence | denotes | No.: |
| T235 | 2536-2576 | Sentence | denotes | 1060, was purchased from Vector Biolabs. |
| T236 | 2577-2654 | Sentence | denotes | GA C13:0, C15:1, and C17:1, were purchased from Sigma Aldrich, St. Louis, MO. |
| T237 | 2655-2718 | Sentence | denotes | GA was diluted in methanol or DMSO to a concentration of 50 mM. |
| T238 | 2719-2848 | Sentence | denotes | Effects of GA in all assays and models used in this study have been compared to vehicle-treated (i.e. methanol or DMSO) controls. |
| T239 | 2849-2923 | Sentence | denotes | Cells or viral stocks were treated with the indicated concentration of GA. |
| T240 | 2925-2946 | Sentence | denotes | Western blot analyses |
| T241 | 2947-3159 | Sentence | denotes | For HSV-1, cells were harvested at the indicated times, collected by low-speed centrifugation and rinsed in PBS, then resuspended in RIPA lysis buffer and protease inhibitors (Complete Protease Inhibitor; Roche). |
| T242 | 3160-3236 | Sentence | denotes | Approximately 60 μg of protein per sample was subjected to further analysis. |
| T243 | 3237-3447 | Sentence | denotes | Proteins were electrophoretically separated on 8 to 10% denaturing polyacrylamide gels, electrically transferred to nitrocellulose sheets, blocked by 5% BSA in Tween PBS and reacted with the primary antibodies. |
| T244 | 3448-3605 | Sentence | denotes | The mouse monoclonal antibody to US11 (Goodwin Institute for Cancer Research), and the mouse monoclonal antibody to ICP8, were used at a dilution of 1:1,000. |
| T245 | 3606-3677 | Sentence | denotes | The mouse monoclonal antibody to ICP27 was used at a dilution of 1:250. |
| T246 | 3678-3758 | Sentence | denotes | The mouse monoclonal antibody to β-actin (Sigma) was used at a 1:5,000 dilution. |
| T247 | 3759-3898 | Sentence | denotes | Membranes were then reacted with the appropriate secondary antibody conjugated either to alkaline phosphatase or to horseradish peroxidase. |
| T248 | 3899-4131 | Sentence | denotes | Protein bands were visualized with 5-bromo-4-chloro-3-indolylphosphate–nitroblue tetrazolium (Denville Scientific, Inc.) or with ECL Western Blot detection reagents (Amersham Biosciences) according to the manufacturer’s instruction. |
| T249 | 4133-4151 | Sentence | denotes | Cytotoxicity tests |
| T250 | 4152-4244 | Sentence | denotes | Cells grown in 96 or 48 well plates were exposed to different concentrations of GA for 24 h. |
| T251 | 4245-4348 | Sentence | denotes | Cell viability was determined by Alamarblue® assay (Thermo Fisher Scientific, Catalog number: DAL1025). |
| T252 | 4349-4450 | Sentence | denotes | Pair-wise Student t-tests were used to compare the outcome of a treatment as compared to the control. |
| T253 | 4451-4478 | Sentence | denotes | Error bars are SEM (n ≥ 3). |
| T254 | 4480-4503 | Sentence | denotes | Viral stock preparation |
| T255 | 4504-4835 | Sentence | denotes | Confluent Vero cells in 75-cm2 flasks were infected with HSV in 3 ml of 199V (Gibco; 199 medium supplemented with 1% heat-inactivated FBS and 1% penicillin/streptomycin) medium at a multiplicity of infection (MOI) of 0.01 pfu/cell and incubated by gentle shaking for 2 hours at 37 °C with 5% CO2 to allow cells to absorb the virus. |
| T256 | 4836-4937 | Sentence | denotes | After 2 hours, 199 V was aspirated from the cell culture and Vero cells were gently washed with DPBS. |
| T257 | 4938-5082 | Sentence | denotes | 3 ml of fresh DMEM/5% FBS medium was added and the cells were incubated for 2 to 3 days until 100% of the cells display cytopathic effect (CPE). |
| T258 | 5083-5238 | Sentence | denotes | When 100% CPE was observed, the flask was placed at −80 °C for 15 min, then allowed to warm up at room temperature and 3 ml of cold sterile milk was added. |
| T259 | 5239-5298 | Sentence | denotes | The cells were collected into a 15 ml tube and kept on ice. |
| T260 | 5299-5574 | Sentence | denotes | To free virus particles from the cellular debris, Vero cells were sonicated three times (letting the cell suspension cool on ice for 1 min between sonications), for 30 seconds using a Branson Sonifier with microtip at an output setting of 4 (approximate Power Output of 15%). |
| T261 | 5575-5681 | Sentence | denotes | The virus stock was aliquoted and transferred to sterile, screw-capped cryovials and was stored at −80 °C. |
| T262 | 5682-5729 | Sentence | denotes | The viral titer was determined by plaque assay. |
| T263 | 5731-5749 | Sentence | denotes | HSV-1 plaque assay |
| T264 | 5750-5970 | Sentence | denotes | GA (10 µM) was incubated on the monolayers of Vero cells (6-well plate) with 199V (Gibco; supplemented with 1% heat-inactivated fetal bovine serum and 1% penicillin/streptomycin) at 37 °C for 1 hour prior to inoculation. |
| T265 | 5971-6067 | Sentence | denotes | Following incubation, the supernatants were aspirated and cells were washed two times with DPBS. |
| T266 | 6068-6166 | Sentence | denotes | GFP-HSV-1 strain 17+29, at an MOI of 1 was incubated on the cells with 199V at 37 °C for 24 hours. |
| T267 | 6167-6209 | Sentence | denotes | The supernatant was collected and titered. |
| T268 | 6210-6404 | Sentence | denotes | Various 10-fold dilutions of collected supernatants were incubated on monolayers of fresh Vero cells (6-well plate) at 37 °C on a shaker for 2 h to allow the virus to attach and enter the cells. |
| T269 | 6405-6663 | Sentence | denotes | The supernatants were aspirated and cells were incubated with 20 mg/mL of human serum (Sigma-H4522) in DMEM (Dulbecco’s Modified Eagle’s medium, supplemented with 5% FBS and 1% penicillin/streptomycin) for 3 days at 37 °C in 5% CO2 to allow plaque formation. |
| T270 | 6664-6850 | Sentence | denotes | For plaque counting, the cells were fixed with 100% methanol for 5 min. at room temperature and stained with 10% KaryoMax Giemsa stain in distilled water for 20 min. at room temperature. |
| T271 | 6851-6949 | Sentence | denotes | Viral titer was calculated through plaque counting and expressed as plaque-forming units (PFU)/ml. |
| T272 | 6951-6963 | Sentence | denotes | ZIKV studies |
| T273 | 6964-7059 | Sentence | denotes | Cell free ZIKV in 199V medium was pretreated with 10 µM/ml GA or with DMSO for 1 hour at 37 °C. |
| T274 | 7060-7173 | Sentence | denotes | The pretreated ZIKV was used to infect Vero cells grown in 6 well plates >80% confluency with 0.5 MOI for 1 hour. |
| T275 | 7174-7278 | Sentence | denotes | The infected cells were washed twice with warm DPBS and supplemented with DMEM supplemented with 5% FBS. |
| T276 | 7279-7394 | Sentence | denotes | Supernatant was collected at 4, 24 and 48 hours post-inoculation for cell-free viral RNA copy number determination. |
| T277 | 7395-7534 | Sentence | denotes | NHA were grown in 24 well plates to >80% confluency, treated with GA C15:1 (0–20 µM) for 3 h, and then infected with ZIKV at an MOI of 0.3. |
| T278 | 7535-7653 | Sentence | denotes | Supernatant was carefully removed and replaced at 12 hpi with fresh AGM replenished with GA at 0–20 µM concentrations. |
| T279 | 7654-7890 | Sentence | denotes | Cell viability was assessed at 7 days post-inoculation by Celltiter Aqueous One solution cell proliferation assay (Promega, Madison, WI), and live cells were carefully harvested to extract RNA by the RNeasy kit (Qiagen, Germantown, MD). |
| T280 | 7891-8202 | Sentence | denotes | RNA was quantified using a Nanodrop2000 (ThermoFisher), treated with DNaseI (Sigma-Aldrich) for 15 min at room temperature to remove DNA contamination, and subsequently, DNaseI was inactivated by heating at 70 °C for 15 min. cDNA was synthesized from 0.2–1 μg of RNA using Qscript supermix (Quanta Biosciences). |
| T281 | 8203-8390 | Sentence | denotes | Quantitative real-time PCR (qRT-PCR) reactions were performed in a 20 μl solution containing 10 μl TaqMan Gene Expression Master Mix (Life Technologies), 500 nM primers, and 300 nM probe. |
| T282 | 8391-8523 | Sentence | denotes | Reactions were performed in an Applied Biosystems 7900HT sequence detection system (Thermo Fisher Scientific) using SDS2.3 software. |
| T283 | 8524-8649 | Sentence | denotes | The reaction conditions were, 50 °C for 2 min, 95 °C for 10 min, followed by 45 cycles of 95 °C for 15 s and 60 °C for 1 min. |
| T284 | 8650-8751 | Sentence | denotes | Samples were run in duplicate or triplicates, and template controls were included wherever necessary. |
| T285 | 8752-8889 | Sentence | denotes | Fold change in RNA expression was calculated by relative quantification using the comparative CT method with GAPDH as endogenous control. |
| T286 | 8890-8983 | Sentence | denotes | The primers and probe were designed using the PrimerQuest tool (Integrated DNA Technologies). |
| T287 | 8984-9029 | Sentence | denotes | The sequences of the primers were as follows: |
| T288 | 9030-9308 | Sentence | denotes | ZIKV-F-CGCTGCCCAACACAAGGT; ZIKV-R-, GCTCCCTTTGCCAAAAAGTCCACA, and ZIKV-probe, 5′/56-FAM/ACCTTGACA/ZEN/AGCAGTCAGACACTCAA/3IABkFQ; and human specific GAPDH-F-GGTGTGAACCATGAGAAGTATGA; GAPDH-R-GAGTCCTTCCACGATACCAAAG; and GAPDH-probe, 5′/56-FAM/AGATCATCA/ZEN/GCAATGCCTCCTGCA/3IABkFQ. |
| T289 | 9310-9322 | Sentence | denotes | HCMV studies |
| T290 | 9323-9494 | Sentence | denotes | HFF were grown in 24 well plates to 100% confluency in MEM with 10% FBS to establish viral inhibition of two low-passage clinical strains (BI-6 and CH19) via plaque assay. |
| T291 | 9495-9654 | Sentence | denotes | Cells infected with low-passage HCMV clinical strains (CH19 and BI6) do not release extracellular virus, but they display typical HCMV cytopathic effect (CPE). |
| T292 | 9655-9729 | Sentence | denotes | The percentage of infected cells was estimated visually in HFF monolayers. |
| T293 | 9730-9819 | Sentence | denotes | Dilutions of trypsinized cells were used as inocula for HFF monolayers in 24 well plates. |
| T294 | 9820-9947 | Sentence | denotes | After 7 days in culture, plaques were counted to determine the average number of plaques in 4-well replicates of each dilution. |
| T295 | 9948-10037 | Sentence | denotes | The optimal dilution for each virus strain produced an average of 60–80 plaques per well. |
| T296 | 10038-10114 | Sentence | denotes | CMVPT30-GFP having undergone multiple passages produces extracellular virus. |
| T297 | 10115-10198 | Sentence | denotes | Viral infection was quantitatively determined by PRA of culture supernatant medium. |
| T298 | 10199-10393 | Sentence | denotes | Cells were either exposed to GA for three hours prior to inoculation, or were inoculated prior to addition of medium containing GA at concentrations of 1, 2, 5, 10, and 20 µM in MEM with 1% FBS. |
| T299 | 10394-10459 | Sentence | denotes | One set of four wells was treated with DMSO as a vehicle control. |
| T300 | 10460-10549 | Sentence | denotes | For each experiment the remaining concentrations were represented in quadruplicate wells. |
| T301 | 10550-10739 | Sentence | denotes | Plates were read beginning at 7 days post inoculation (dpi) to determine the GA concentration producing a reduction of 50% in the number of plaques relative to vehicle control wells (IC50). |
| T302 | 10740-10882 | Sentence | denotes | Data were normalized to the vehicle controls, and probit analysis in SPSS was used to obtain 95% confidence intervals of the mean IC50 values. |
| T303 | 10884-10920 | Sentence | denotes | HCMV DNA extraction and quantitation |
| T304 | 10921-11004 | Sentence | denotes | HCMV infected monolayers were trypsinized and pooled at the termination of the PRA. |
| T305 | 11005-11098 | Sentence | denotes | DNA was extracted from the pooled monolayers using the Blood gDNA kit (Promega, Madison, WI). |
| T306 | 11099-11193 | Sentence | denotes | HCMV DNA was quantitated using a validated in-house assay, which targets the DNA polymerase30. |
| T307 | 11194-11276 | Sentence | denotes | Reactions were performed on an Applied Biosystems 7500 (Thermo Fisher Scientific). |
| T308 | 11278-11313 | Sentence | denotes | Infection of GFP-expressing viruses |
| T309 | 11314-11419 | Sentence | denotes | Monolayers of Vero cells were incubated for 1 hour with medium containing 10 µM GA C15:1 or DMSO vehicle. |
| T310 | 11420-11625 | Sentence | denotes | The cells then were inoculated with a replication-defective human adenovirus type 5 (dE1/E3) containing GFP (Ad-GFP) or GFP-HSV-1 virus, at an MOI of 0.5 in a medium containing 10 µM GA C15:1 for 24 hours. |
| T311 | 11626-11677 | Sentence | denotes | Infection was evaluated by fluorescence microscopy. |
| T312 | 11679-11703 | Sentence | denotes | Cell-cell fusion vectors |
| T313 | 11704-11807 | Sentence | denotes | In these experiments, we used cell-cell fusion systems of ZIKV, HIV, EBOV, IVA, VEEV, VSV, SFV and EBV. |
| T314 | 11808-11892 | Sentence | denotes | The plasmids, fusion proteins, and the related references are described in Table S2. |
| T315 | 11894-11912 | Sentence | denotes | Fusion experiments |
| T316 | 11913-11986 | Sentence | denotes | Nucleated cell-cell fusion, experiments were performed as described31,32. |
| T317 | 11987-12131 | Sentence | denotes | Calcein-AM was loaded into effector cells expressing the fusion protein, and 7-amino-4-chloromethylcoumarin (CMAC) was loaded into target cells. |
| T318 | 12132-12168 | Sentence | denotes | Mixing of dyes was scored as fusion. |
| T319 | 12169-12316 | Sentence | denotes | Fusion experiments for each viral protein were performed as previously described: EBOV GP32; HIV33; SFV E1/E2 and IAV HA34; VEEV E, VSV, and EBV35. |
| T320 | 12317-12421 | Sentence | denotes | Unless stated otherwise, EBOV GP was used as the fusion protein and C15:1 GA was used to inhibit fusion. |
| T321 | 12422-12506 | Sentence | denotes | As shown in Fig. 2B, C15:1 GA inhibited fusion for the eight tested fusion proteins. |
| T322 | 12507-12582 | Sentence | denotes | Figure 2C documents that fusion was blockaded by GA C13:0, C15:1, or C17:1. |
| T323 | 12584-12604 | Sentence | denotes | Statistical analysis |
| T324 | 12605-12685 | Sentence | denotes | For HCMV plaque assays, data were analyzed using one-way ANOVA analysis in SPSS. |
| T325 | 12686-12763 | Sentence | denotes | For BI6 n = 25; degrees of freedom between groups = 4 and within groups = 20. |
| T326 | 12764-12786 | Sentence | denotes | The F value is 68.827. |
| T327 | 12787-12865 | Sentence | denotes | For CH19 n = 24; degrees of freedom between groups = 4 and within groups = 19. |
| T328 | 12866-12888 | Sentence | denotes | The F value is 41.090. |
| T329 | 12889-13027 | Sentence | denotes | For fusion experiments, Pair-wise Student t-tests were used to compare the outcome of a manipulation on fusion as compared to the control. |
| T330 | 13028-13055 | Sentence | denotes | Error bars are SEM (n ≥ 3). |
| T331 | 13056-13110 | Sentence | denotes | HCMV DNA copy numbers expressed as percent of control. |
| T332 | 13111-13144 | Sentence | denotes | Significance was set at P < 0.05. |
| T333 | 13145-13194 | Sentence | denotes | P values were obtained using a two-tailed t-test. |
| T334 | 13195-13240 | Sentence | denotes | All measurements were performed in duplicate. |
| T335 | 13241-13283 | Sentence | denotes | Standard curves were included on each run. |
| T336 | 13284-13401 | Sentence | denotes | For ZIKV, the data were analyzed using unpaired, two tailed student’s t test and represented as mean± standard error. |
| T337 | 13402-13532 | Sentence | denotes | Experiments were done independently at least three times and a value of p ≤ 0.05 indicated a statistically significant difference. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T8 | 3509-3515 | Phenotype | denotes | Cancer | http://purl.obolibrary.org/obo/HP_0002664 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32179788-4300104-138463445 | 400-402 | 4300104 | denotes | 28 |
| 32179788-10196307-138463446 | 468-470 | 10196307 | denotes | 29 |
| 32179788-12198609-138463447 | 1062-1066 | 12198609 | denotes | 1914 |
| 32179788-23661800-138463448 | 1074-1077 | 23661800 | denotes | 615 |
| 32179788-17716703-138463449 | 1244-1246 | 17716703 | denotes | 16 |
| 32179788-10196307-138463450 | 6088-6090 | 10196307 | denotes | 29 |
| 32179788-26422187-138463451 | 11190-11192 | 26422187 | denotes | 30 |
| 32179788-10590134-138463452 | 11980-11982 | 10590134 | denotes | 31 |
| 32179788-26730950-138463453 | 11983-11985 | 26730950 | denotes | 32 |
| 32179788-26730950-138463454 | 12258-12260 | 26730950 | denotes | 32 |
| 32179788-11038187-138463455 | 12265-12267 | 11038187 | denotes | 33 |
| 32179788-17686870-138463456 | 12289-12291 | 17686870 | denotes | 34 |
| 32179788-24124539-138463457 | 12313-12315 | 24124539 | denotes | 35 |