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PMC:7074453 / 1506-21561 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
56 396-401 Species denotes human Tax:9606
57 405-410 Species denotes human Tax:9606
58 651-666 Species denotes new coronavirus Tax:2697049
59 668-677 Species denotes 2019-nCoV Tax:2697049
60 893-903 Species denotes SARS-CoV-2 Tax:2697049
61 47-56 Disease denotes pneumonia MESH:D011014
62 449-470 Disease denotes nosocomial infections MESH:D003428
63 720-729 Disease denotes pneumonia MESH:D011014
64 779-803 Disease denotes Coronavirus Disease 2019 MESH:C000657245
65 805-813 Disease denotes COVID-19 MESH:C000657245
66 1033-1060 Disease denotes novel coronavirus pneumonia MESH:C000657245
67 1062-1070 Disease denotes COVID-19 MESH:C000657245
68 1191-1197 Disease denotes deaths MESH:D003643
69 1506-1514 Disease denotes COVID-19 MESH:C000657245
71 1679-1687 Disease denotes COVID-19 MESH:C000657245
81 2114-2119 Species denotes human Tax:9606
82 2123-2128 Species denotes human Tax:9606
83 2311-2326 Species denotes new coronavirus Tax:2697049
84 2387-2392 Species denotes human Tax:9606
85 2396-2401 Species denotes human Tax:9606
86 1772-1781 Disease denotes pneumonia MESH:D011014
87 1985-2000 Disease denotes viral pneumonia
88 2248-2263 Disease denotes viral pneumonia
89 2420-2440 Disease denotes nosocomial infection MESH:D003428
94 3171-3179 Species denotes patients Tax:9606
95 3288-3294 Species denotes People Tax:9606
96 2500-2508 Disease denotes COVID-19 MESH:C000657245
97 3075-3084 Disease denotes pneumonia MESH:D011014
110 3624-3632 Species denotes patients Tax:9606
111 3729-3737 Species denotes patients Tax:9606
112 3813-3821 Species denotes patients Tax:9606
113 3325-3333 Disease denotes COVID-19 MESH:C000657245
114 3357-3366 Disease denotes mortality MESH:D003643
115 3433-3466 Disease denotes Severe Acute Respiratory Syndrome MESH:D045169
116 3513-3545 Disease denotes Middle East Respiratory Syndrome MESH:D018352
117 3547-3551 Disease denotes MERS MESH:D018352
118 3636-3644 Disease denotes COVID-19 MESH:C000657245
119 3656-3660 Disease denotes MERS MESH:D018352
120 3711-3719 Disease denotes COVID-19 MESH:C000657245
121 3724-3728 Disease denotes MERS MESH:D018352
129 4041-4049 Species denotes patients Tax:9606
130 4073-4081 Species denotes patients Tax:9606
131 4196-4202 Species denotes People Tax:9606
132 3948-3970 Disease denotes Corona Virus Pneumonia
133 4007-4016 Disease denotes infection MESH:D007239
134 4032-4040 Disease denotes COVID-19 MESH:C000657245
135 4108-4117 Disease denotes infection MESH:D007239
166 4290-4301 Species denotes Coronavirus Tax:11118
167 4389-4402 Species denotes Coronaviridae Tax:11118
168 4504-4515 Species denotes coronavirus Tax:11118
169 4599-4612 Species denotes coronaviruses Tax:11118
170 4629-4635 Species denotes humans Tax:9606
171 4737-4748 Species denotes coronavirus Tax:11118
172 4756-4759 Species denotes CoV Tax:11118
173 4766-4822 Species denotes severe acute respiratory syndrome-associated coronavirus Tax:694009
174 4824-4833 Species denotes SARSr-CoV Tax:694009
175 4859-4870 Species denotes coronavirus Tax:11118
176 4916-4924 Species denotes patients Tax:9606
177 4979-4990 Species denotes coronavirus Tax:11118
178 4992-5002 Species denotes SARS-CoV-2 Tax:2697049
179 5050-5060 Species denotes SARS-CoV-2 Tax:2697049
180 5098-5101 Species denotes CoV Tax:11118
181 5106-5115 Species denotes SARSr-CoV Tax:694009
182 5140-5151 Species denotes coronavirus Tax:11118
183 5162-5168 Species denotes humans Tax:9606
184 5207-5220 Species denotes coronaviruses Tax:11118
185 5270-5280 Species denotes SARS-CoV-2 Tax:2697049
186 5320-5335 Species denotes bat coronavirus Tax:1508220
187 5376-5385 Species denotes SARSr-CoV Tax:694009
188 5432-5435 Species denotes CoV Tax:11118
189 5492-5502 Species denotes SARS-CoV-2 Tax:2697049
190 5595-5600 Species denotes human Tax:9606
191 4647-4651 Species denotes 229E Tax:11137
192 4656-4660 Species denotes NL63 Tax:277944
193 4693-4725 Disease denotes Middle East respiratory syndrome MESH:D018352
194 4943-4952 Disease denotes pneumonia MESH:D011014
195 5083-5091 Disease denotes zoonotic MESH:D015047
207 5864-5873 Gene denotes S protein Gene:43740568
208 5960-5969 Gene denotes S-protein Gene:43740568
209 6011-6042 Gene denotes angiotensin-converting enzyme 2 Gene:59272
210 6044-6048 Gene denotes ACE2 Gene:59272
211 6157-6166 Gene denotes S-protein Gene:43740568
212 6167-6171 Gene denotes ACE2 Gene:59272
213 5725-5734 Gene denotes S protein Gene:43740568
214 5609-5620 Species denotes Coronavirus Tax:11118
215 5949-5959 Species denotes SARS-CoV-2 Tax:2697049
216 6005-6010 Species denotes human Tax:9606
217 6131-6136 Species denotes human Tax:9606
228 6256-6269 Species denotes coronaviruses Tax:11118
229 6301-6309 Species denotes SARS-CoV Tax:694009
230 6314-6322 Species denotes MERS-CoV Tax:1335626
231 6328-6341 Species denotes coronaviruses Tax:11118
232 6416-6421 Chemical denotes ether MESH:D004986
233 6427-6434 Chemical denotes ethanol MESH:D000431
234 6436-6444 Chemical denotes chlorine MESH:D002713
235 6459-6473 Chemical denotes peracetic acid MESH:D010463
236 6479-6489 Chemical denotes chloroform MESH:D002725
237 6536-6549 Chemical denotes chlorhexidine MESH:D002710
239 6588-6596 Disease denotes COVID-19 MESH:C000657245
263 6776-6782 Species denotes People Tax:9606
264 7041-7049 Species denotes patients Tax:9606
265 7260-7268 Species denotes patients Tax:9606
266 7335-7343 Species denotes patients Tax:9606
267 7422-7430 Species denotes patients Tax:9606
268 7473-7481 Species denotes patients Tax:9606
269 7544-7552 Species denotes patients Tax:9606
270 7561-7569 Species denotes patients Tax:9606
271 7612-7620 Species denotes Children Tax:9606
272 6678-6705 Disease denotes Novel Coronavirus Pneumonia MESH:C000657245
273 6884-6889 Disease denotes Fever MESH:D005334
274 6891-6898 Disease denotes fatigue MESH:D005221
275 6906-6915 Disease denotes dry cough MESH:D003371
276 6951-6962 Disease denotes obstruction MESH:D000402
277 6986-7012 Disease denotes upper respiratory symptoms MESH:D012818
278 7060-7067 Disease denotes dyspnea MESH:D004417
279 7124-7159 Disease denotes acute respiratory distress syndrome MESH:D012128
280 7161-7173 Disease denotes septic shock MESH:D012772
281 7191-7209 Disease denotes metabolic acidosis MESH:D000138
282 7215-7238 Disease denotes coagulation dysfunction MESH:D001778
283 7297-7302 Disease denotes fever MESH:D005334
284 7323-7328 Disease denotes fever MESH:D005334
285 7373-7378 Disease denotes fever MESH:D005334
301 7901-7910 Gene denotes myoglobin Gene:4151
302 7991-8009 Gene denotes C-reactive protein Gene:1401
303 8011-8014 Gene denotes CRP Gene:1401
304 8260-8263 Gene denotes IL2 Gene:3558
305 8265-8268 Gene denotes IL7 Gene:3574
306 8270-8274 Gene denotes IL10 Gene:3586
307 8282-8286 Gene denotes IP10 Gene:3627
308 8288-8292 Gene denotes MCP1 Gene:6347
309 8294-8299 Gene denotes MIP1a Gene:6348
310 8305-8310 Gene denotes TNF-α Gene:7124
311 7832-7840 Species denotes patients Tax:9606
312 7968-7976 Species denotes patients Tax:9606
313 8105-8113 Species denotes patients Tax:9606
314 8229-8237 Species denotes patients Tax:9606
315 8330-8338 Species denotes patients Tax:9606
320 8369-8377 Species denotes patients Tax:9606
321 8491-8499 Species denotes patients Tax:9606
322 8392-8401 Disease denotes pneumonia MESH:D011014
323 8753-8769 Disease denotes pleural effusion MESH:D010996
370 10602-10610 Species denotes patients Tax:9606
371 9013-9019 Disease denotes deaths MESH:D003643
372 9056-9061 Disease denotes fever MESH:D005334
373 9071-9076 Disease denotes cough MESH:D003371
374 9095-9101 Disease denotes breath MESH:D004417
375 9111-9131 Disease denotes chest tightness/pain MESH:D002637
376 9141-9148 Disease denotes fatigue MESH:D005221
377 9158-9165 Disease denotes dyspnea MESH:D004417
378 9175-9184 Disease denotes dizziness MESH:D004244
379 9185-9193 Disease denotes headache MESH:D006261
380 9210-9214 Disease denotes pain MESH:D010146
381 9380-9392 Disease denotes hypertension MESH:D006973
382 9402-9410 Disease denotes diabetes MESH:D003920
383 9420-9442 Disease denotes coronary heart disease MESH:D003324
384 9452-9471 Disease denotes cerebral infarction MESH:D002544
385 9489-9499 Disease denotes bronchitis MESH:D001991
386 9512-9531 Disease denotes Parkinson’s disease MESH:D010300
387 9630-9635 Disease denotes fever MESH:D005334
388 9643-9648 Disease denotes cough MESH:D003371
389 9666-9675 Disease denotes pneumonia MESH:D011014
390 9692-9698 Disease denotes breath MESH:D004417
391 9706-9717 Disease denotes muscle ache MESH:D063806
392 9741-9749 Disease denotes headache MESH:D006261
393 9756-9767 Disease denotes sore throat MESH:D010608
394 9774-9785 Disease denotes rhinorrhoea
395 9792-9802 Disease denotes chest pain MESH:D002637
396 9809-9818 Disease denotes diarrhoea MESH:D003967
397 9829-9835 Disease denotes nausea MESH:D009325
398 9840-9848 Disease denotes vomiting MESH:D014839
399 9954-9963 Disease denotes pneumonia MESH:D011014
400 9972-9977 Disease denotes fever MESH:D005334
401 9985-9990 Disease denotes cough MESH:D003371
402 9998-10009 Disease denotes lymphopenia MESH:D008231
403 10017-10024 Disease denotes Dyspnea MESH:D004417
404 10032-10039 Disease denotes fatigue MESH:D005221
405 10072-10080 Disease denotes headache MESH:D006261
406 10087-10097 Disease denotes hemoptysis MESH:D006469
407 10108-10116 Disease denotes diarrhea MESH:D003967
408 10160-10168 Disease denotes diabetes MESH:D003920
409 10176-10188 Disease denotes hypertension MESH:D006973
410 10200-10222 Disease denotes cardiovascular disease MESH:D002318
411 10375-10387 Disease denotes hypertension MESH:D006973
412 10389-10397 Disease denotes diabetes MESH:D003920
413 10403-10426 Disease denotes coronary heart diseases MESH:D003324
414 10584-10589 Disease denotes death MESH:D003643
415 10593-10601 Disease denotes COVID-19 MESH:C000657245
417 10629-10637 Disease denotes COVID-19 MESH:C000657245
419 10745-10751 Species denotes People Tax:9606
426 11122-11130 Species denotes patients Tax:9606
427 11196-11204 Species denotes patients Tax:9606
428 11210-11215 Disease denotes fever MESH:D005334
429 11220-11240 Disease denotes respiratory symptoms MESH:D012818
430 11346-11351 Disease denotes fever MESH:D005334
431 11395-11404 Disease denotes pneumonia MESH:D011014
434 11684-11694 Species denotes SARS-CoV-2 Tax:2697049
435 11837-11845 Species denotes patients Tax:9606
437 11927-11936 Disease denotes pneumonia MESH:D011014
441 11986-11991 Disease denotes fever MESH:D005334
442 11993-12013 Disease denotes respiratory symptoms MESH:D012818
443 12019-12028 Disease denotes pneumonia MESH:D011014
448 12184-12190 Chemical denotes oxygen MESH:D010100
449 12289-12295 Chemical denotes oxygen MESH:D010100
450 12340-12346 Chemical denotes oxygen MESH:D010100
451 12114-12121 Disease denotes dyspnea MESH:D004417
453 12411-12430 Disease denotes respiratory failure MESH:D012131
455 12768-12776 Disease denotes COVID-19 MESH:C000657245
458 13253-13258 Chemical denotes water MESH:D014867
459 13375-13381 Chemical denotes oxygen MESH:D010100
462 13447-13465 Gene denotes C-reactive protein Gene:1401
463 13467-13470 Gene denotes CRP Gene:1401
468 13670-13676 Chemical denotes oxygen MESH:D010100
469 13704-13710 Chemical denotes oxygen MESH:D010100
470 13738-13744 Chemical denotes oxygen MESH:D010100
471 13808-13814 Chemical denotes oxygen MESH:D010100
474 13968-13973 Gene denotes IFN-α Gene:3439
475 14057-14076 Chemical denotes Lopinavir/Ritonavir MESH:C558899
477 14366-14375 Disease denotes infection MESH:D007239
479 14378-14381 Gene denotes 6.3 Gene:55558
481 14547-14566 Disease denotes secondary infection MESH:D060085
486 14727-14734 Species denotes patient Tax:9606
487 14871-14878 Species denotes patient Tax:9606
488 14831-14839 Disease denotes coughing MESH:D003371
489 15095-15106 Disease denotes lung injury MESH:D055370
492 15589-15607 Chemical denotes methylprednisolone MESH:D008775
493 15423-15430 Disease denotes dyspnea MESH:D004417
500 16277-16285 Species denotes patients Tax:9606
501 16861-16869 Species denotes patients Tax:9606
502 17241-17249 Species denotes patients Tax:9606
503 15745-15753 Disease denotes COVID-19 MESH:C000657245
504 16064-16069 Disease denotes Fever MESH:D005334
505 16852-16860 Disease denotes COVID-19 MESH:C000657245
525 17697-17714 Species denotes novel coronavirus Tax:2697049
526 17721-17730 Species denotes 2019-nCoV Tax:2697049
527 17757-17767 Species denotes SARS-CoV-2 Tax:2697049
528 17842-17851 Species denotes SARSr-CoV Tax:694009
529 17858-17861 Species denotes CoV Tax:11118
530 17905-17914 Species denotes SARSr-CoV Tax:694009
531 17925-17928 Species denotes CoV Tax:11118
532 17930-17940 Species denotes SARS-CoV-2 Tax:2697049
533 17976-17984 Species denotes patients Tax:9606
534 17663-17672 Disease denotes pneumonia MESH:D011014
535 17963-17972 Disease denotes mortality MESH:D003643
536 18006-18015 Disease denotes infection MESH:D007239
537 18070-18097 Disease denotes novel coronavirus pneumonia MESH:C000657245
538 18120-18132 Disease denotes hypertension MESH:D006973
539 18134-18142 Disease denotes diabetes MESH:D003920
540 18144-18166 Disease denotes coronary heart disease MESH:D003324
541 18168-18187 Disease denotes cerebral infarction MESH:D002544
542 18201-18211 Disease denotes bronchitis MESH:D001991
543 18264-18269 Disease denotes death MESH:D003643
548 18336-18342 Species denotes people Tax:9606
549 18380-18386 Species denotes people Tax:9606
550 18581-18589 Disease denotes COVID-19 MESH:C000657245
551 18670-18688 Disease denotes infectious disease MESH:D003141
563 19193-19198 Species denotes human Tax:9606
564 19202-19207 Species denotes human Tax:9606
565 19329-19337 Species denotes patients Tax:9606
566 19366-19374 Species denotes patients Tax:9606
567 19536-19544 Species denotes patients Tax:9606
568 19734-19742 Species denotes patients Tax:9606
569 18991-18999 Disease denotes COVID-19 MESH:C000657245
570 19591-19600 Disease denotes infection MESH:D007239
571 19616-19625 Disease denotes infection MESH:D007239
572 19660-19680 Disease denotes nosocomial infection MESH:D003428
573 19880-19907 Disease denotes novel coronavirus pneumonia MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 4330-4333 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T4 4492-4498 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T5 4889-4912 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T6 5242-5248 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T7 5727-5734 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T8 5837-5845 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T9 5866-5873 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T10 5874-5878 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T11 5962-5969 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T12 6159-6166 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T13 6970-6974 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T14 7733-7743 Body_part denotes leukocytes http://purl.org/sig/ont/fma/fma62852
T15 7758-7763 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T16 7792-7802 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T17 7868-7873 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T18 7882-7888 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T19 7947-7955 Body_part denotes troponin http://purl.org/sig/ont/fma/fma62338
T20 8002-8009 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T21 8020-8031 Body_part denotes erythrocyte http://purl.org/sig/ont/fma/fma62845
T22 8184-8189 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T23 8190-8200 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T24 8243-8249 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T25 8260-8263 Body_part denotes IL2 http://purl.org/sig/ont/fma/fma84051
T26 8351-8356 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T27 8407-8412 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T28 8444-8448 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T29 8695-8700 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T30 8719-8723 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T31 9111-9116 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T32 9429-9434 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T33 9706-9712 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T34 9761-9767 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T35 9792-9797 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T36 10047-10053 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T37 10412-10417 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T38 11359-11376 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T39 11524-11534 Body_part denotes leukocytes http://purl.org/sig/ont/fma/fma62852
T40 11549-11559 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T41 11695-11698 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T42 11723-11727 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T43 11749-11755 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T44 11757-11763 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T45 11770-11793 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T46 11954-11959 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T47 12046-12051 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T48 12177-12183 Body_part denotes finger http://purl.org/sig/ont/fma/fma9666
T49 12518-12523 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T50 12596-12601 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T51 13368-13374 Body_part denotes finger http://purl.org/sig/ont/fma/fma9666
T52 13417-13422 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T53 13432-13437 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T54 13458-13465 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T55 13496-13501 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T56 13574-13588 Body_part denotes arterial blood http://purl.org/sig/ont/fma/fma83066
T57 13628-13633 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T58 13831-13835 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T59 14585-14590 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T60 14950-14954 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T61 15095-15099 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T62 15451-15456 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T63 16158-16162 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T64 18153-18158 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 4889-4912 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T4 4895-4912 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T5 6970-6974 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T6 7758-7763 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T7 7868-7873 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T8 8184-8189 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 8351-8356 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T10 8407-8412 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T11 8444-8448 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 8719-8723 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T13 8753-8769 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T14 9111-9116 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T15 9429-9434 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T16 9761-9767 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T17 9792-9797 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T18 10047-10053 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T19 10412-10417 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T20 11359-11376 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T21 11749-11755 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T22 11757-11763 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T23 11770-11793 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T24 11776-11793 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T25 11954-11959 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T26 12046-12051 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T27 12177-12183 Body_part denotes finger http://purl.obolibrary.org/obo/UBERON_0002389
T28 12518-12523 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T29 12596-12601 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T30 13368-13374 Body_part denotes finger http://purl.obolibrary.org/obo/UBERON_0002389
T31 13417-13422 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T32 13432-13437 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T33 13496-13501 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T34 13574-13588 Body_part denotes arterial blood http://purl.obolibrary.org/obo/UBERON_0013755
T35 13583-13588 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T36 13628-13633 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T37 13831-13835 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T38 14585-14590 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T39 14950-14954 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T40 15095-15099 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T41 15451-15456 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T42 18153-18158 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p17732s22 7792-7808 CPA denotes lymphocyte count
p17732s25 7812-7821 NegReg denotes decreased
p17734s9 8137-8144 MPA denotes D-dimer
p17770s17 11539-11548 NegReg denotes decreased

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T20 47-56 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T21 449-470 Disease denotes nosocomial infections http://purl.obolibrary.org/obo/MONDO_0043544
T22 720-729 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T23 779-803 Disease denotes Coronavirus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T24 805-813 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 893-901 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 893-897 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 1051-1060 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 1062-1070 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 1506-1514 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 1679-1687 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 1772-1781 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T32 1985-2000 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T33 1991-2000 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T34 2248-2263 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T35 2254-2263 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T36 2420-2440 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T37 2431-2440 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 2500-2508 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 3075-3084 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T40 3325-3333 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 3433-3466 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T42 3468-3472 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 3636-3644 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 3646-3650 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 3711-3719 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 3808-3812 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 3955-3970 Disease denotes Virus Pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T48 3961-3970 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T49 4007-4016 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T50 4032-4040 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 4108-4117 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T52 4766-4799 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T53 4943-4952 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T54 4992-5000 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 4992-4996 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T56 5050-5058 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 5050-5054 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T58 5270-5278 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T59 5270-5274 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T60 5492-5500 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T61 5492-5496 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T62 5949-5957 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 5949-5953 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T64 6301-6309 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 6301-6305 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T66 6588-6596 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 6696-6705 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T68 6964-6974 Disease denotes runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T69 7124-7159 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T70 7130-7159 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T71 7191-7209 Disease denotes metabolic acidosis http://purl.obolibrary.org/obo/MONDO_0000440
T72 7201-7209 Disease denotes acidosis http://purl.obolibrary.org/obo/MONDO_0006022
T73 8392-8401 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T74 9380-9392 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T75 9402-9410 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T76 9420-9442 Disease denotes coronary heart disease http://purl.obolibrary.org/obo/MONDO_0005010
T77 9429-9442 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T78 9452-9471 Disease denotes cerebral infarction http://purl.obolibrary.org/obo/MONDO_0002679|http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057|http://purl.obolibrary.org/obo/MONDO_0020671
T82 9481-9499 Disease denotes chronic bronchitis http://purl.obolibrary.org/obo/MONDO_0005607
T83 9489-9499 Disease denotes bronchitis http://purl.obolibrary.org/obo/MONDO_0003781
T84 9512-9531 Disease denotes Parkinson’s disease http://purl.obolibrary.org/obo/MONDO_0005180
T85 9666-9675 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T86 9756-9767 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T87 9809-9818 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T88 9954-9963 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T89 9998-10009 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T90 10108-10116 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T91 10160-10168 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T92 10176-10188 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T93 10200-10222 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T94 10375-10387 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T95 10389-10397 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T96 10403-10426 Disease denotes coronary heart diseases http://purl.obolibrary.org/obo/MONDO_0005010
T97 10593-10601 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 10629-10637 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 11395-11404 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T100 11684-11692 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T101 11684-11688 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T102 11927-11936 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T103 12019-12028 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T104 12411-12430 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T105 12768-12776 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 14356-14375 Disease denotes bacterial infection http://purl.obolibrary.org/obo/MONDO_0005113
T107 14366-14375 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T108 14557-14566 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T109 15100-15106 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T110 15745-15753 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T111 16852-16860 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T112 17663-17672 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T113 17757-17765 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 17757-17761 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T115 17930-17938 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T116 17930-17934 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T117 18006-18015 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T118 18088-18097 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T119 18120-18132 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T120 18134-18142 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T121 18144-18166 Disease denotes coronary heart disease http://purl.obolibrary.org/obo/MONDO_0005010
T122 18153-18166 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T123 18168-18187 Disease denotes cerebral infarction http://purl.obolibrary.org/obo/MONDO_0002679|http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057|http://purl.obolibrary.org/obo/MONDO_0020671
T127 18193-18211 Disease denotes chronic bronchitis http://purl.obolibrary.org/obo/MONDO_0005607
T128 18201-18211 Disease denotes bronchitis http://purl.obolibrary.org/obo/MONDO_0003781
T129 18305-18309 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T130 18409-18413 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T131 18564-18568 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T132 18581-18589 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T133 18670-18688 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T134 18991-18999 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T135 19591-19600 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T136 19616-19625 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T137 19660-19680 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T138 19671-19680 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T139 19898-19907 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T140 19919-19923 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T18 34-35 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 140-142 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T20 217-222 http://purl.obolibrary.org/obo/PR_000001318 denotes sells
T21 266-273 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T22 396-401 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T23 405-410 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 577-580 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T25 649-650 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 831-843 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T27 869-874 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 950-957 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T29 978-979 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1011-1013 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T31 1097-1099 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T32 1312-1313 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 1388-1389 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 1426-1429 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T35 1460-1461 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 1752-1753 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 1832-1834 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T38 2114-2119 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T39 2123-2128 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T40 2155-2157 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T41 2199-2200 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 2309-2310 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 2387-2392 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T44 2396-2401 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T45 2660-2662 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T46 2740-2742 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T47 3157-3158 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 3773-3780 http://purl.obolibrary.org/obo/UBERON_0003100 denotes females
T49 3791-3796 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T50 3791-3796 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T51 3857-3862 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T52 3857-3862 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T53 3875-3882 http://purl.obolibrary.org/obo/UBERON_0003100 denotes females
T54 3955-3960 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T55 4237-4242 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T56 4305-4306 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 4343-4348 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T58 4629-4635 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T59 4889-4912 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T60 4965-4966 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 5162-5168 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T62 5281-5284 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T63 5320-5323 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T64 5352-5354 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T65 5391-5392 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 5437-5439 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T67 5453-5454 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 5455-5461 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat is
T69 5587-5591 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T70 5595-5607 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human beings
T71 5621-5624 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T72 5695-5696 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 5720-5722 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T74 5768-5773 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T75 5784-5785 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 5853-5858 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T77 5874-5878 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T78 5979-5980 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 6005-6010 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T80 6082-6087 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T81 6094-6095 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 6131-6136 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T83 6189-6191 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T84 6521-6526 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T85 6868-6872 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1–14
T86 6904-6905 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 6970-6974 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T88 7436-7437 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 7494-7495 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 7758-7763 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T91 7758-7763 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T92 7868-7873 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T93 7868-7873 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T94 7882-7888 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T95 7882-7888 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T96 7882-7888 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T97 7882-7888 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T98 7901-7910 http://purl.obolibrary.org/obo/PR_000010213 denotes myoglobin
T99 8020-8031 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocyte
T100 8184-8189 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T101 8184-8189 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T102 8243-8249 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T103 8260-8263 http://purl.obolibrary.org/obo/PR_000001379 denotes IL2
T104 8351-8356 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T105 8407-8412 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T106 8444-8448 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T107 8444-8448 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T108 8695-8700 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T109 8719-8723 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T110 8719-8723 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T111 8753-8769 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T112 8947-8948 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T113 8958-8960 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T114 9111-9116 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T115 9252-9253 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T116 9429-9434 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T117 9429-9434 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T118 9429-9434 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T119 9429-9434 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T120 9706-9712 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T121 9706-9712 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T122 9706-9712 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T123 9706-9712 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T124 9719-9721 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T125 9792-9797 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T126 9895-9897 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T127 10412-10417 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T128 10412-10417 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T129 10412-10417 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T130 10412-10417 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T131 10665-10666 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 10898-10899 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T133 10921-10922 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T134 10943-10944 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T135 10958-10959 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T136 11033-11034 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T137 11310-11311 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T138 11723-11727 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T139 11770-11793 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T140 11954-11959 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T141 12046-12051 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T142 12111-12112 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T143 12156-12157 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T144 12260-12268 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T145 12260-12268 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T146 12403-12404 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T147 12472-12473 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T148 12518-12523 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T149 12596-12601 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T150 12656-12661 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T151 12669-12671 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T152 13009-13010 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T153 13417-13422 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T154 13417-13422 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T155 13496-13501 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T156 13496-13501 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T157 13574-13582 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T158 13574-13582 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T159 13583-13588 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T160 13583-13588 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T161 13628-13633 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T162 13831-13835 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T163 14475-14483 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T164 14585-14590 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T165 14805-14811 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T166 14950-14954 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T167 14950-14954 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T168 15095-15099 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T169 15095-15099 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T170 15197-15205 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T171 15451-15456 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T172 15504-15505 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T173 15518-15521 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3–5
T174 15701-15702 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T175 15755-15757 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T176 15760-15761 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T177 15815-15816 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T178 15897-15905 http://purl.obolibrary.org/obo/OBI_0000245 denotes organize
T179 15897-15905 http://purl.obolibrary.org/obo/OBI_0100026 denotes organize
T180 15897-15905 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organize
T181 16059-16061 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T182 17152-17165 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T183 17334-17347 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T184 17565-17566 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T185 17695-17696 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T186 17814-17821 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T187 17828-17833 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T188 17868-17869 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T189 17989-17992 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T190 17993-17994 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T191 18153-18158 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T192 18153-18158 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T193 18153-18158 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T194 18153-18158 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T195 18318-18319 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T196 18634-18635 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T197 18865-18866 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T198 18927-18928 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 19093-19096 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T200 19163-19168 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T201 19193-19201 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human to
T202 19202-19207 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T203 19240-19243 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T204 19379-19384 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T205 19977-19982 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 5727-5734 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T4 5837-5845 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T5 5866-5873 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 5962-5969 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 6011-6022 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T8 6050-6059 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T9 6159-6166 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T10 6416-6421 Chemical denotes ether http://purl.obolibrary.org/obo/CHEBI_25698
T11 6427-6434 Chemical denotes ethanol http://purl.obolibrary.org/obo/CHEBI_16236
T12 6436-6444 Chemical denotes chlorine http://purl.obolibrary.org/obo/CHEBI_23116|http://purl.obolibrary.org/obo/CHEBI_29310
T14 6445-6457 Chemical denotes disinfectant http://purl.obolibrary.org/obo/CHEBI_48219
T15 6469-6473 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T16 6479-6489 Chemical denotes chloroform http://purl.obolibrary.org/obo/CHEBI_35255
T17 6536-6549 Chemical denotes chlorhexidine http://purl.obolibrary.org/obo/CHEBI_3614
T18 7901-7910 Chemical denotes myoglobin http://purl.obolibrary.org/obo/CHEBI_7044
T19 8002-8009 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T20 11145-11157 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T21 11153-11157 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T22 12184-12190 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T23 12289-12295 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T24 12340-12346 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T25 13253-13258 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T26 13375-13381 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T27 13458-13465 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28 13670-13676 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T29 13704-13710 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T30 13738-13744 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T31 13808-13814 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T32 13930-13944 Chemical denotes antiviral drug http://purl.obolibrary.org/obo/CHEBI_36044
T33 13930-13939 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T34 13940-13944 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T35 14057-14066 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T36 14194-14205 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T37 14256-14267 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T38 15334-15339 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T39 15470-15485 Chemical denotes glucocorticoids http://purl.obolibrary.org/obo/CHEBI_24261
T40 15589-15607 Chemical denotes methylprednisolone http://purl.obolibrary.org/obo/CHEBI_6888
T41 16525-16538 Chemical denotes disinfectants http://purl.obolibrary.org/obo/CHEBI_48219
T42 19235-19239 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T43 19385-19393 Chemical denotes carriers http://purl.obolibrary.org/obo/CHEBI_78059
T44 20029-20034 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 2891-2897 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T3 7215-7226 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation
T4 11794-11803 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T5 13552-13563 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation
T6 14812-14822 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T7 19957-19969 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T14 0-2 Sentence denotes 1.
T15 3-15 Sentence denotes Introduction
T16 16-129 Sentence denotes In December 2019, a cluster of pneumonia of unknown etiology was detected in Wuhan City, Hubei Province of China.
T17 130-278 Sentence denotes The first 27 reported cases were all related to Huanan Seafood Wholesale Market, which sells aquatic products, live poultries, and wild animals [1].
T18 279-521 Sentence denotes The first batch of cases identified later showed no exposure or even no relation to Huanan Wholesale Market, and the human-to-human transmission was confirmed; moreover, nosocomial infections were reported in some health care workers [2,3,4].
T19 522-743 Sentence denotes The Chinese Center for Disease Control and Prevention (CDC) and Chinese health authorities later identified and announced that a new coronavirus (2019-nCoV) was accountable for the outbreak of this pneumonia in Wuhan [5].
T20 744-962 Sentence denotes Thereafter, this disease was named Coronavirus Disease 2019 (COVID-19) by World Health Organization (WHO), and the causative virus was designated as SARS-CoV-2 by the International Committee on Taxonomy of Viruses [6].
T21 963-1212 Sentence denotes Within one and a half months, as of midnight of 18 February 2020, the novel coronavirus pneumonia (COVID-19) had spread from Hubei to 34 provinces in China and another 25 countries, resulting in 75,199 confirmed cases with 2009 deaths (Table 1) [7].
T22 1213-1342 Sentence denotes At present, the number of cases is increasing rapidly in China and even around the world, which is a big threat to public health.
T23 1343-1421 Sentence denotes Thirty-one provinces of China have initiated a level-1 public health response.
T24 1422-1654 Sentence denotes The aim of this article is to provide a timely review of the characteristics of the COVID-19 outbreak including the epidemiology, pathogenicity, clinical features, and measures of treatment, prevention, and control for this disease.
T25 1656-1658 Sentence denotes 2.
T26 1659-1687 Sentence denotes The Epidemiology of COVID-19
T27 1688-1905 Sentence denotes On 31 December 2019, Wuhan Municipal Health Commission reported a number of unknown pneumonia cases related to Huanan Seafood Wholesale Market, 27 cases were hospitalized, seven of which were in serious condition [1].
T28 1906-2147 Sentence denotes On 5 February 2020, Wuhan Municipal Health Committee reported that 59 cases of viral pneumonia with unknown etiology were detected in Wuhan, including seven severe cases, but no clear evidence was found for “human-to-human” transmission [8].
T29 2148-2331 Sentence denotes On Jan 11, Wuhan Municipal Health Committee issued a new report confirming that the pathogen of the viral pneumonia of unknown cause was initially determined as a new coronavirus [9].
T30 2332-2460 Sentence denotes On 20 February 2020, it was officially confirmed that “human-to-human” transmission and nosocomial infection had occurred [2,3].
T31 2461-2677 Sentence denotes Since 16 February 2020, the cumulative COVID-19 case number increased quickly; meanwhile, the daily emerging case number increased steadily to 3886 on 4 February 2020, and then fluctuated to 2015 on 11 February 2020.
T32 2678-2757 Sentence denotes The fatality cases number increased steadily to 2004 cases on 18 February 2020.
T33 2758-2878 Sentence denotes The cumulative and daily emerged cases number jumped to 59,804 and 15,152, respectively, on 12 February 2020 (Figure 1).
T34 2879-3153 Sentence denotes This fierce growth of cumulative and daily emerged cases number in one day is due to the improvement of diagnosis standard for confirmed cases in Hubei province, in which the suspected cases with pneumonia imaging characteristics are categorized as clinical diagnosis cases.
T35 3154-3231 Sentence denotes As a result, the patients can receive standard treatment as soon as possible.
T36 3232-3320 Sentence denotes All data are from the National Health Commission of the People’s Republic of China [10].
T37 3321-3599 Sentence denotes The COVID-19 resulted in much lower mortality (about 2.67% up-to-date) among the confirmed cases, compared with Severe Acute Respiratory Syndrome (SARS) at 9.60% (November 2002–July 2003) and Middle East Respiratory Syndrome (MERS) at 34.4% (April 2012–November 2019) (Table 1).
T38 3600-3710 Sentence denotes The median ages for the patients of COVID-19, SARS, and MERS are 55.5, 41.3, and 52.8 years old, respectively.
T39 3711-3891 Sentence denotes COVID-19 and MERS patients share similargender composition of females (32%) and males (67%), but SARS patients show almost the same proportion of males (46.9%) and females (53.1%).
T40 3892-4118 Sentence denotes According to the “Diagnosis &Treatment Scheme for Novel Corona Virus Pneumonia (Trial) 6th Edition”, the source of infection is majorly the COVID-19 patients, even the asymptomatic patients can also be the source of infection.
T41 4119-4195 Sentence denotes The transmission way is majorly through respiratory droplets and contacting.
T42 4196-4243 Sentence denotes People are generally susceptible to this virus.
T43 4245-4247 Sentence denotes 3.
T44 4248-4289 Sentence denotes Pathogenic Characteristics of Coronavirus
T45 4290-4442 Sentence denotes Coronavirus is a single strand positive RNA (+ssRNA) virus, belonging to order Nidovirales, family Coronaviridae, and subfamily Orthocoronavirinae [13].
T46 4443-4575 Sentence denotes According to the characteristics of serotype and genome, the coronavirus subfamily is divided into four genera: α, β, γ, and δ [14].
T47 4576-4854 Sentence denotes There are six kinds of coronaviruses known to infect humans, including 229E and NL63 of α genus [15,16], OC43, HKU1, Middle East respiratory syndrome-associated coronavirus (MERSr-CoV), and severe acute respiratory syndrome-associated coronavirus (SARSr-CoV) of β genus [16,17].
T48 4855-5049 Sentence denotes The coronavirus isolated from the lower respiratory tract of patients with unidentified pneumonia in Wuhan is a new type of coronavirus (SARS-CoV-2) belonging to genus β, and subgenus sarbe [5].
T49 5050-5173 Sentence denotes SARS-CoV-2 is different from the zoonotic MERSr-CoV and SARSr-CoV and becomes the seventh coronavirus to infect humans [5].
T50 5174-5441 Sentence denotes The phylogenetic analysis of the coronaviruses based on full-length genome sequences shows that SARS-CoV-2 has the smallest genetic distance from bat coronavirus, but only about 45%–90% similarity with SARSr-CoV, and a lower similarity of 20%–60% with MERSr-CoV [18].
T51 5442-5608 Sentence denotes Therefore, a bat is probably the original host of SARS-CoV-2, although the intermediate host may still exist in the process of transmission from bats to human beings.
T52 5609-5724 Sentence denotes Coronavirus has an envelope, the particles are round or oval, often pleomorphic, with a diameter of 50–200 nm [18].
T53 5725-5807 Sentence denotes S protein is located on the surface of the virus and forms a rod-shaped structure.
T54 5808-5919 Sentence denotes As one of the main antigenic proteins of the virus, the S protein gene is the main target used for typing [19].
T55 5920-6193 Sentence denotes Xu et al. also reported that SARS-CoV-2 S-protein supports a strong interaction with human angiotensin-converting enzyme 2 (ACE2) molecules, which means that the virus poses a significant public health risk for human transmission by the S-protein–ACE2 binding pathway [18].
T56 6194-6323 Sentence denotes The knowledge of the physical and chemical characteristics of coronaviruses mostly comes from the study of SARS-CoV and MERS-CoV.
T57 6324-6402 Sentence denotes The coronaviruses are sensitive to heat and can be killed at 56 °C for 30 min.
T58 6403-6555 Sentence denotes In addition, ether, 75% ethanol, chlorine disinfectant, peracetic acid, and chloroform can effectively inactivate the virus, but not chlorhexidine [20].
T59 6557-6559 Sentence denotes 4.
T60 6560-6596 Sentence denotes Clinical Characteristics of COVID-19
T61 6598-6602 Sentence denotes 4.1.
T62 6603-6626 Sentence denotes Clinical Manifestations
T63 6627-6883 Sentence denotes According to the “Diagnosis & Treatment Scheme for Novel Coronavirus Pneumonia (Trial) 6th Edition” enacted by the National Health Commission of the People’s Republic of China on 19 February 2020, the incubation time after exposure is about 1–14 days [20].
T64 6884-6944 Sentence denotes Fever, fatigue, and a dry cough are the main manifestations.
T65 6945-7022 Sentence denotes Nasal obstruction, runny nose, and other upper respiratory symptoms are rare.
T66 7023-7239 Sentence denotes About half of the patients developed dyspnea one week later, and severe cases developed rapidly into acute respiratory distress syndrome, septic shock, hard-to-correct metabolic acidosis, and coagulation dysfunction.
T67 7240-7329 Sentence denotes Severe and critical patients may present moderate to low fever, or even no obvious fever.
T68 7330-7416 Sentence denotes Some patients have mild onset symptoms, no fever, and mostly recovered after one week.
T69 7417-7534 Sentence denotes Most patients have a favorable prognosis, although some patients are left in a critical condition, or do not survive.
T70 7535-7611 Sentence denotes The aged patients and the patients with basic diseases have worse prognosis.
T71 7612-7647 Sentence denotes Children cases are relatively mild.
T72 7649-7653 Sentence denotes 4.2.
T73 7654-7676 Sentence denotes Laboratory Examination
T74 7677-7962 Sentence denotes In the early stages of the disease, the total number of leukocytes in peripheral blood is normal or decreased, the lymphocyte count is decreased, and some patients present elevated levels of liver enzyme, muscle enzyme, and myoglobin; some severe cases present elevated troponin level.
T75 7963-8083 Sentence denotes Most patients show elevated C-reactive protein (CRP) and erythrocyte sedimentation rate (ESR), and normal procalcitonin.
T76 8084-8206 Sentence denotes In severe cases, the patients present with increased D-dimer and progressively decreased peripheral blood lymphocyte [20].
T77 8207-8344 Sentence denotes Compared with non-ICU patients, the plasma levels of IL2, IL7, IL10, GSCF, IP10, MCP1, MIP1a, and TNF-α were higher in ICU patients [21].
T78 8346-8350 Sentence denotes 4.3.
T79 8351-8364 Sentence denotes Chest Imaging
T80 8365-8454 Sentence denotes All patients suffered from pneumonia, and chest CT scans showed shadows in the lung [20].
T81 8455-8606 Sentence denotes In the early stages of the disease, patients present with multiple small patch shadows and interstitial changes, especially in the extrapulmonary zone.
T82 8607-8701 Sentence denotes It further progresses to multiple ground glass shadows and infiltrative shadows in both lungs.
T83 8702-8783 Sentence denotes In severe cases, lung consolidation may occur, but pleural effusion is rare [20].
T84 8784-8946 Sentence denotes To provide more information about the disease for the treatment in clinics, we collected detailed information about the fatal cases released by official channels.
T85 8947-9251 Sentence denotes A total of 41 fatal cases were used to reveal the symptoms of the deaths, showing the symptom composition of fever (80.5%), cough (56.1%), short of breath (31.7%), chest tightness/pain (24.4%), fatigue (22.0%), dyspnea (12.2%), dizziness/headache (4.9%), general pain (7.3%) and chills (4.9%) (Figure 2).
T86 9252-9550 Sentence denotes A total of 26 cases with fatalities were used to disclose the dangerous comorbidities, showing that the major comorbidities are hypertension (53.8%), diabetes (42.3%), coronary heart disease (19.2%), cerebral infarction (15.4%), chronic bronchitis (19.2%) and Parkinson’s disease (7.7%) (Figure 2).
T87 9551-9858 Sentence denotes Chen N et al. reported that, among 99 confirmed cases, the common symptoms are fever (83%), cough (82%), bilateral pneumonia (75%), short of breath (31%), muscle ache (11%), confusion (9%), headache (8%), sore throat (5%), rhinorrhoea (4%), chest pain (2%), diarrhoea (2%), and nausea and vomiting (1%) [4].
T88 9859-10234 Sentence denotes Huang C et al. reported that, among 41 confirmed cases, the symptom composition is as follows: pneumonia (100%), fever (98%), cough (76%), lymphopenia (63%), Dyspnea (55%), fatigue (44%), sputum production (28%), headache (8%), hemoptysis (5%), and diarrhea (3%); and the underlying diseases included diabetes (20%), hypertension (15%), and cardiovascular disease (15%) [21].
T89 10235-10499 Sentence denotes Though the symptom compositions reported for the confirmed cases are similar to that of the fatality cases we collected, the percentages of hypertension, diabetes, and coronary heart diseases are much higher among the fatality cases than among the confirmed cases.
T90 10500-10611 Sentence denotes This may indicate that the comorbidities probably are important factors resulted in death of COVID-19 patients.
T91 10613-10615 Sentence denotes 5.
T92 10616-10637 Sentence denotes Diagnosis of COVID-19
T93 10638-10841 Sentence denotes The diagnosis was based on a set of clinical criteria recommended by the National Health Commission of the People’s Republic of China and the National Administration of Traditional Chinese Medicine [20].
T94 10843-10847 Sentence denotes 5.1.
T95 10848-10863 Sentence denotes Suspected Cases
T96 10864-11337 Sentence denotes The cases comply with any item of A and any two items of B, or with 3 items of B as follows. (A) Epidemiological history: within two weeks before disease onset, 1. have a history of travel or residence in the district with case report; 2. have contacted the patients positive with nucleic acid detection; 3. have contacted with the patients with fever and respiratory symptoms from the district with case report; 4. disease onset in clustering. (B) Clinical manifestations:
T97 11338-11340 Sentence denotes 1.
T98 11341-11389 Sentence denotes Have fever and/or respiratory tract symptoms; 2.
T99 11390-11451 Sentence denotes Have pneumonia with image characteristics mentioned above; 3.
T100 11452-11566 Sentence denotes In early stage of the disease, have normal or decreased total number of leukocytes, or decreased lymphocyte count.
T101 11568-11572 Sentence denotes 5.2.
T102 11573-11588 Sentence denotes Confirmed Cases
T103 11589-11846 Sentence denotes The unconfirmed cases met the criteria of the suspected cases and are identified positive with SARS-CoV-2 RNA, by real-time RT-PCR or gene sequencing, from the sputum, throat swab, lower respiratory tract secretion, or other samples collected from patients.
T104 11848-11852 Sentence denotes 5.3.
T105 11853-11891 Sentence denotes Clinical Typing of the Confirmed Cases
T106 11892-11966 Sentence denotes Mild cases: have mild symptoms, no pneumonia manifestation in chest image;
T107 11967-12058 Sentence denotes Common cases: have fever, respiratory symptoms, and pneumonia manifestation in chest image;
T108 12059-12348 Sentence denotes Severe cases: comply with any item of the follows. (A) dyspnea, respiratory rate ≥30 times/min; (B) at resting state, finger oxygen saturation ≤ 93%; (C) PaO2/FiO2 ≤ 300 mmHg (1mmHg = 0.133 kPa, PaO2: arterial partial pressure of oxygen, FiO2: fractional concentration of inspired oxygen);
T109 12349-12750 Sentence denotes Critical cases: comply with any item of the follows. (A) show respiratory failure and mechanical ventilation is required; (B) present with shock; (C) combine with other organ failure needing Intensive Care Unit (ICU) monitoring and treatment; (D) chest imaging shows multilobe lesions or progress of lesion focus within 48 h ≥ 50%; (E) combine with other clinical conditions requiring hospitalization.
T110 12752-12754 Sentence denotes 6.
T111 12755-12776 Sentence denotes Treatment of COVID-19
T112 12778-12782 Sentence denotes 6.1.
T113 12783-12840 Sentence denotes Treatment Area Decision According to the Disease Severity
T114 12841-12966 Sentence denotes Suspected and confirmed cases should be treated in isolation in hospitals with effective isolation and protective conditions.
T115 12967-13081 Sentence denotes The suspected cases should be isolated in a single room, and the confirmed cases can be accepted in the same room.
T116 13082-13142 Sentence denotes Critical cases should be treated in ICU as soon as possible.
T117 13144-13148 Sentence denotes 6.2.
T118 13149-13166 Sentence denotes General Treatment
T119 13167-13404 Sentence denotes Bed rest, strengthen supportive treatment, ensure sufficient energy; pay attention to water-electrolytes balance and maintain the stability of the internal environment; closely monitor vital signs and finger oxygen saturation, and so on.
T120 13405-13642 Sentence denotes Monitor the blood routine, urine routine, C-reactive protein (CRP) and health indications (liver enzyme, myocardial enzyme, renal function, etc.), coagulation function, arterial blood gas analysis if necessary, and recheck chest imaging.
T121 13643-13777 Sentence denotes According to the change of oxygen saturation, give effective oxygen therapy in time, including oxygen given by nasal catheter or mask.
T122 13778-13895 Sentence denotes If necessary, apply high flow oxygen therapy via the nose, noninvasive or invasive mechanical ventilation, and so on.
T123 13896-13956 Sentence denotes Antiviral treatment: no effective antiviral drug at present.
T124 13957-14139 Sentence denotes Treat with IFN-α aerosol inhalation (five million U per time for adults, two times per day), and/or Lopinavir/Ritonavir oral administration (two tablets per time, two times per day).
T125 14140-14268 Sentence denotes Antibiotic treatment: avoid blind and improper use of antibiotics, especially the combination use of broad-spectrum antibiotics.
T126 14269-14307 Sentence denotes Strengthen bacteriological monitoring.
T127 14308-14376 Sentence denotes Antibiotics should be used in time in secondary bacterial infection.
T128 14378-14382 Sentence denotes 6.3.
T129 14383-14421 Sentence denotes Treatment of Severe and Critical Cases
T130 14422-14608 Sentence denotes Treatment principle: based on symptomatic treatment, actively prevent and treat complications, treat basic diseases, prevent secondary infection, and timely apply organ function support.
T131 14609-14944 Sentence denotes Respiratory support: apply noninvasive mechanical ventilation for two hours, if the condition is not improved, or the patient is intolerable to noninvasive ventilation, accompanied with increased airway secretions, severe coughing, or unstable hemodynamics, the patient should be transferred to invasive mechanical ventilation in time.
T132 14945-15107 Sentence denotes The “lung-protective ventilation strategy” with low tidal volume should be adopted in invasive mechanical ventilation to reduce ventilator-associated lung injury.
T133 15108-15237 Sentence denotes If necessary, ventilation in the prone position, recruitment maneuver, or extracorporeal membrane oxygenation (ECMO) can be used.
T134 15238-15387 Sentence denotes Circulation support: improve microcirculation based on full fluid resuscitation, use vasoactive drugs, and apply hemodynamic monitoring if necessary.
T135 15388-15622 Sentence denotes Others: according to the degree of dyspnea and the progress of chest imaging, use glucocorticoids appropriately for a short time (3–5 days) with the recommended dose no more than what is equivalent to methylprednisolone 1–2 mg/kg·day.
T136 15624-15626 Sentence denotes 7.
T137 15627-15649 Sentence denotes Prevention and Control
T138 15650-15759 Sentence denotes As of 26 January 2020, 30 provinces have initiated a level-1 public health response to control COVID-19 [22].
T139 15760-16063 Sentence denotes A level-1 response means that during the occurrence of a particularly serious public health emergency, the provincial headquarters shall organize and coordinate the emergency response work within its administrative area according to the decision deployment and unified command of the State Council [22].
T140 16064-16286 Sentence denotes Fever observation rooms shall be set up at stations, airports, ports, and so on to detect the body temperature of passengers entering and leaving the area and implement observation/registration for the suspicious patients.
T141 16287-16470 Sentence denotes The government under its jurisdiction shall, in accordance with the law, take compulsory measures to restrict all kinds of the congregation, and ensure the supply of living resources.
T142 16471-16618 Sentence denotes They will also ensure the sufficient supply of masks, disinfectants, and other protective articles on the market, and standardize the market order.
T143 16619-16756 Sentence denotes The strengthening of public health surveillance, hygiene knowledge publicity, and monitoring of public places and key groups is required.
T144 16757-16977 Sentence denotes Comprehensive medical institutions and some specialized hospitals should be prepared to accept COVID-19 patients to ensure that severe and critical cases can be differentiated, diagnosed, and effectively treated in time.
T145 16978-17305 Sentence denotes The health administration departments, public health departments, and medical institutions at all (province, city, county, district, township, and street) levels, and social organizations shall function in epidemic prevention and control and provide guidance for patients and close contact families for disease prevention [23].
T146 17306-17369 Sentence denotes The responsibilities of the organizations are shown in Table 2.
T147 17370-17605 Sentence denotes In accordance with the working principle of “prevention first, prevention and control combined, scientific guidance and timely treatment”, the prevention and control work shall be carried out in a coordinated and standardized way [23].
T148 17607-17609 Sentence denotes 8.
T149 17610-17620 Sentence denotes Discussion
T150 17621-17822 Sentence denotes The recent outbreak of the unknown severe pneumonia in China is caused by a novel coronavirus named 2019-nCoV [2], later was designated SARS-CoV-2 by the International Committee on Taxonomy of Viruses.
T151 17823-17890 Sentence denotes This virus and the SARSr-CoV/MERSr-CoV share a common ancestor [2].
T152 17891-18024 Sentence denotes Compared with SARSr-CoV and MERSr-CoV, SARS-CoV-2 results in much lower mortality in patients but has a comparable infection ability.
T153 18025-18270 Sentence denotes From the analysis of the fatal cases of this novel coronavirus pneumonia, the comorbidities of hypertension, diabetes, coronary heart disease, cerebral infarction, and chronic bronchitis were found to be dangerous factors that resulted in death.
T154 18271-18395 Sentence denotes In 2002 and 2003, the outbreak of SARS brought a disaster to the people of the world, especially the Chinese people [24,25].
T155 18396-18569 Sentence denotes Fortunately, SARS was finally defeated, and Chinese health departments upgraded their disease prevention and control system by summing up their experiences of fighting SARS.
T156 18570-18689 Sentence denotes Thus, when COVID-19 appeared, the whole country quickly entered a state of fighting against the new infectious disease.
T157 18690-18873 Sentence denotes Policies led by the National Health Commission have been formulated and implemented efficiently, and Chinese scientists identified the etiology of the disease in no more than a month.
T158 18874-18990 Sentence denotes However, new cases are increasing every day, showing a trend of spreading to the whole country and across the world.
T159 18991-19157 Sentence denotes COVID-19 appeared just one month before the Spring Festival of China, and the massive population flow has brought great challenges for disease prevention and control.
T160 19158-19255 Sentence denotes This virus can be transmitted from human to human and no effective treatment drug has been found.
T161 19256-19479 Sentence denotes The most effective prevention and control measures are to find suspected patients and close contacts, confirm patients and virus carriers, and block the transmission through isolation, disinfection, and personal protection.
T162 19480-19631 Sentence denotes Therefore, early detection, isolation, and treatment of patients are the key measures to control the source of infection and reduce the infection rate.
T163 19632-19743 Sentence denotes It is also crucial to avoid nosocomial infection by strengthening the management of medical staff and patients.
T164 19744-19827 Sentence denotes Health education on knowledge for disease prevention and control is also important.
T165 19828-20055 Sentence denotes Finally, if we want to eliminate the threat of this novel coronavirus pneumonia similar to SARS, we need to learn more about the pathogenesis of the virus and develop specific vaccines and therapeutic drugs as soon as possible.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 47-56 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 720-729 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1051-1060 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T12 1772-1781 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 1991-2000 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T14 2254-2263 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 3075-3084 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T16 3961-3970 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 4943-4952 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 6696-6705 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T19 6884-6889 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T20 6891-6898 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T21 6906-6915 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T22 6945-6962 Phenotype denotes Nasal obstruction http://purl.obolibrary.org/obo/HP_0001742
T23 6964-6974 Phenotype denotes runny nose http://purl.obolibrary.org/obo/HP_0031417
T24 7060-7067 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T25 7130-7150 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T26 7168-7173 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T27 7191-7209 Phenotype denotes metabolic acidosis http://purl.obolibrary.org/obo/HP_0001942
T28 7297-7302 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T29 7323-7328 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T30 7373-7378 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T31 8392-8401 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T32 8753-8769 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T33 9056-9061 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T34 9071-9076 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T35 9086-9101 Phenotype denotes short of breath http://purl.obolibrary.org/obo/HP_0002098
T36 9111-9126 Phenotype denotes chest tightness http://purl.obolibrary.org/obo/HP_0031352
T37 9127-9131 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531
T38 9141-9148 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T39 9158-9165 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T40 9175-9184 Phenotype denotes dizziness http://purl.obolibrary.org/obo/HP_0002321
T41 9185-9193 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T42 9210-9214 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531
T43 9226-9232 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T44 9380-9392 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T45 9481-9499 Phenotype denotes chronic bronchitis http://purl.obolibrary.org/obo/HP_0004469
T46 9630-9635 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T47 9643-9648 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T48 9666-9675 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T49 9683-9698 Phenotype denotes short of breath http://purl.obolibrary.org/obo/HP_0002098
T50 9706-9717 Phenotype denotes muscle ache http://purl.obolibrary.org/obo/HP_0003326
T51 9741-9749 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T52 9756-9767 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T53 9792-9802 Phenotype denotes chest pain http://purl.obolibrary.org/obo/HP_0100749
T54 9809-9818 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T55 9829-9848 Phenotype denotes nausea and vomiting http://purl.obolibrary.org/obo/HP_0002017
T56 9954-9963 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T57 9972-9977 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T58 9985-9990 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T59 9998-10009 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T60 10017-10024 Phenotype denotes Dyspnea http://purl.obolibrary.org/obo/HP_0002094
T61 10032-10039 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T62 10072-10080 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T63 10087-10097 Phenotype denotes hemoptysis http://purl.obolibrary.org/obo/HP_0002105
T64 10108-10116 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T65 10176-10188 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T66 10200-10222 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T67 10375-10387 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T68 11210-11215 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T69 11346-11351 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T70 11395-11404 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T71 11927-11936 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T72 11986-11991 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T73 12019-12028 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T74 12114-12121 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T75 12411-12430 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T76 12488-12493 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T77 14831-14839 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T78 15423-15430 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T79 16064-16069 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T80 17663-17672 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T81 18088-18097 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T82 18120-18132 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T83 18193-18211 Phenotype denotes chronic bronchitis http://purl.obolibrary.org/obo/HP_0004469
T84 19898-19907 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32093211-31986261-57901183 516-517 31986261 denotes 3
32093211-32007143-57901184 518-519 32007143 denotes 4
32093211-31986261-57901185 2457-2458 31986261 denotes 3
32093211-30531947-57901186 4438-4440 30531947 denotes 13
32093211-30791586-57901187 4571-4573 30791586 denotes 14
32093211-9367365-57901188 4673-4675 9367365 denotes 15
32093211-17631932-57901189 4676-4678 17631932 denotes 16
32093211-17631932-57901190 4847-4849 17631932 denotes 16
32093211-30679277-57901191 4850-4852 30679277 denotes 17
32093211-32009228-57901192 5437-5439 32009228 denotes 18
32093211-32009228-57901193 5720-5722 32009228 denotes 18
32093211-18798692-57901194 5915-5917 18798692 denotes 19
32093211-32009228-57901195 6189-6191 32009228 denotes 18
32093211-31986264-57901196 8340-8342 31986264 denotes 21
32093211-32007143-57901197 9855-9856 32007143 denotes 4
32093211-31986264-57901198 10230-10232 31986264 denotes 21
32093211-14585636-57901199 18388-18390 14585636 denotes 24
32093211-12690091-57901200 18391-18393 12690091 denotes 25