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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 66-93 Disease denotes Novel Coronavirus Infection MESH:C000657245
3 95-103 Disease denotes COVID-19 MESH:C000657245
7 261-278 Species denotes novel coronavirus Tax:2697049
8 280-288 Disease denotes COVID-19 MESH:C000657245
9 290-300 Disease denotes infections MESH:D007239
16 1418-1423 Species denotes human Tax:9606
17 1600-1605 Species denotes human Tax:9606
18 1609-1614 Species denotes human Tax:9606
19 1332-1360 Disease denotes novel coronavirus infections MESH:C000657245
20 1362-1370 Disease denotes COVID-19 MESH:C000657245
21 2127-2135 Disease denotes COVID-19 MESH:C000657245
26 3356-3389 Disease denotes severe acute respiratory syndrome MESH:D045169
27 3391-3395 Disease denotes SARS MESH:D045169
28 3621-3625 Disease denotes SARS MESH:D045169
29 3739-3747 Disease denotes COVID-19 MESH:C000657245
33 4642-4650 Disease denotes COVID-19 MESH:C000657245
34 4651-4660 Disease denotes infection MESH:D007239
35 4912-4921 Disease denotes infection MESH:D007239
37 5324-5332 Disease denotes COVID-19 MESH:C000657245
40 5614-5624 Disease denotes infections MESH:D007239
41 5903-5911 Disease denotes COVID-19 MESH:C000657245
43 7827-7835 Disease denotes COVID-19 MESH:C000657245
45 8734-8744 Disease denotes infections MESH:D007239
49 10501-10509 Disease denotes infected MESH:D007239
50 10562-10570 Disease denotes infected MESH:D007239
51 10640-10648 Disease denotes infected MESH:D007239
53 13172-13180 Disease denotes COVID-19 MESH:C000657245
58 15048-15055 Species denotes persons Tax:9606
59 15202-15208 Species denotes people Tax:9606
60 15693-15701 Species denotes patients Tax:9606
61 14828-14836 Disease denotes COVID-19 MESH:C000657245
64 16001-16007 Species denotes people Tax:9606
65 16513-16522 Disease denotes infection MESH:D007239
68 16929-16934 Species denotes human Tax:9606
69 17025-17034 Disease denotes infection MESH:D007239
73 17676-17686 Species denotes SARS-CoV-2 Tax:2697049
74 17464-17472 Disease denotes COVID-19 MESH:C000657245
75 17730-17738 Disease denotes infected MESH:D007239
77 18832-18835 Gene denotes JST Gene:449523
148 19266-19276 Disease denotes infections MESH:D007239
149 19348-19358 Disease denotes infections MESH:D007239
151 19534-19542 Disease denotes infected MESH:D007239

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 9959-9964 https://glytoucan.org/Structures/Glycans/G11259JT denotes ln(2)
T2 10062-10064 https://glytoucan.org/Structures/Glycans/G04616ST denotes ln
T3 10076-10081 https://glytoucan.org/Structures/Glycans/G11259JT denotes ln(2)
T4 10092-10097 https://glytoucan.org/Structures/Glycans/G11259JT denotes ln(2)

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 18837-18842 Body_part denotes CREST http://purl.org/sig/ont/fma/fma75035
T2 20304-20308 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T3 20411-20415 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T4 20692-20696 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T5 20773-20777 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 84-93 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T2 95-103 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 280-288 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 290-300 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T5 1350-1360 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T6 1362-1370 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 2127-2135 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 3143-3153 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T9 3356-3389 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T10 3391-3395 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 3621-3625 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 3739-3747 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 4642-4650 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 4651-4660 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 4912-4921 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 5324-5332 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 5614-5627 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T18 5903-5911 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T19 7827-7835 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 8734-8747 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T21 13172-13180 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T22 14828-14836 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 16513-16522 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 17025-17034 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 17464-17472 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 17676-17684 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 17676-17680 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 19266-19276 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T29 19348-19358 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 547-548 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 593-594 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 751-752 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 850-851 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 917-918 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 940-941 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1415-1423 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes by human
T8 1600-1605 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T9 1609-1614 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T10 2194-2195 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2883-2892 http://purl.obolibrary.org/obo/OBI_0000245 denotes organized
T12 3135-3136 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 3193-3196 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T14 3208-3209 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 3645-3654 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T16 4027-4030 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T17 4227-4230 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T18 4361-4362 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 5026-5028 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T20 5471-5472 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 5517-5518 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 5756-5760 http://purl.obolibrary.org/obo/CLO_0001757 denotes at 1
T23 6216-6217 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 6646-6650 http://purl.obolibrary.org/obo/CLO_0004265 denotes h(t)
T25 6778-6782 http://purl.obolibrary.org/obo/CLO_0004265 denotes h(t)
T26 6825-6826 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 6930-6931 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 6960-6961 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 7089-7090 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 7408-7409 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 7580-7581 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 7604-7607 http://purl.obolibrary.org/obo/CLO_0008285 denotes p=1
T33 7604-7607 http://purl.obolibrary.org/obo/CLO_0008286 denotes p=1
T34 7713-7714 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 8078-8079 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 8169-8170 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 8335-8336 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 8469-8473 http://purl.obolibrary.org/obo/CLO_0004265 denotes h(t)
T39 8499-8503 http://purl.obolibrary.org/obo/CLO_0004265 denotes h(t)
T40 8961-8962 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 9059-9060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 9148-9149 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 9241-9242 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 9471-9472 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 9509-9511 http://purl.obolibrary.org/obo/CLO_0007437 denotes m1
T46 9509-9511 http://purl.obolibrary.org/obo/CLO_0007448 denotes m1
T47 9509-9511 http://purl.obolibrary.org/obo/CLO_0007449 denotes m1
T48 9509-9511 http://purl.obolibrary.org/obo/CLO_0050175 denotes m1
T49 9509-9511 http://purl.obolibrary.org/obo/CLO_0052399 denotes m1
T50 9564-9565 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 9634-9637 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T52 9763-9769 http://purl.obolibrary.org/obo/CLO_0008888 denotes (rt)−1
T53 9783-9784 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 10065-10067 http://purl.obolibrary.org/obo/CLO_0051741 denotes C1
T55 10069-10071 http://purl.obolibrary.org/obo/CLO_0007437 denotes m1
T56 10069-10071 http://purl.obolibrary.org/obo/CLO_0007448 denotes m1
T57 10069-10071 http://purl.obolibrary.org/obo/CLO_0007449 denotes m1
T58 10069-10071 http://purl.obolibrary.org/obo/CLO_0050175 denotes m1
T59 10069-10071 http://purl.obolibrary.org/obo/CLO_0052399 denotes m1
T60 10081-10083 http://purl.obolibrary.org/obo/CLO_0051741 denotes C1
T61 10085-10087 http://purl.obolibrary.org/obo/CLO_0007437 denotes m1
T62 10085-10087 http://purl.obolibrary.org/obo/CLO_0007448 denotes m1
T63 10085-10087 http://purl.obolibrary.org/obo/CLO_0007449 denotes m1
T64 10085-10087 http://purl.obolibrary.org/obo/CLO_0050175 denotes m1
T65 10085-10087 http://purl.obolibrary.org/obo/CLO_0052399 denotes m1
T66 10100-10102 http://purl.obolibrary.org/obo/CLO_0007437 denotes m1
T67 10100-10102 http://purl.obolibrary.org/obo/CLO_0007448 denotes m1
T68 10100-10102 http://purl.obolibrary.org/obo/CLO_0007449 denotes m1
T69 10100-10102 http://purl.obolibrary.org/obo/CLO_0050175 denotes m1
T70 10100-10102 http://purl.obolibrary.org/obo/CLO_0052399 denotes m1
T71 10169-10172 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAS
T72 10312-10313 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 10381-10383 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T74 10523-10526 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T75 10708-10714 http://purl.obolibrary.org/obo/CLO_0007919 denotes n = 18
T76 10708-10714 http://purl.obolibrary.org/obo/CLO_0007920 denotes n = 18
T77 10790-10797 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T78 11344-11347 http://purl.obolibrary.org/obo/CLO_0054057 denotes 181
T79 11385-11386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 11632-11633 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 11772-11773 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 11825-11826 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 11985-11986 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 12120-12121 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 12280-12281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 12377-12378 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 12606-12607 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 12920-12921 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 13363-13364 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 13409-13410 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 13540-13541 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 13609-13612 http://purl.obolibrary.org/obo/CLO_0001562 denotes a 2
T93 13609-13612 http://purl.obolibrary.org/obo/CLO_0001563 denotes a 2
T94 13659-13660 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 14084-14085 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 14183-14184 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 14219-14220 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 14253-14254 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 14286-14287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 14353-14354 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T101 14529-14530 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T102 14713-14714 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 14859-14860 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 14938-14950 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T105 15059-15060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 15085-15087 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T107 15519-15520 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 15727-15728 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 15872-15873 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 15952-15953 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 16213-16214 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 16656-16657 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 16929-16934 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T114 17165-17166 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 17294-17295 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T116 17522-17523 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 17596-17597 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T118 18018-18020 http://purl.obolibrary.org/obo/CLO_0050050 denotes s1
T119 18028-18030 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T120 19618-19620 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T121 19745-19746 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 19823-19824 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T123 19871-19872 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 20026-20027 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 20288-20289 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T126 20347-20348 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 20491-20492 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T128 20525-20526 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 20661-20662 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 20726-20727 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1580-1586 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T2 5070-5083 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T3 5070-5083 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T4 6457-6463 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T5 7008-7020 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T6 9618-9624 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T7 9870-9876 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T8 11032-11038 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T9 11083-11089 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T10 19568-19574 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T11 20881-20893 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-104 Sentence denotes Assessing the Impact of Reduced Travel on Exportation Dynamics of Novel Coronavirus Infection (COVID-19)
T2 106-114 Sentence denotes Abstract
T3 115-315 Sentence denotes The impact of the drastic reduction in travel volume within mainland China in January and February 2020 was quantified with respect to reports of novel coronavirus (COVID-19) infections outside China.
T4 316-610 Sentence denotes Data on confirmed cases diagnosed outside China were analyzed using statistical models to estimate the impact of travel reduction on three epidemiological outcome measures: (i) the number of exported cases, (ii) the probability of a major epidemic, and (iii) the time delay to a major epidemic.
T5 611-709 Sentence denotes From 28 January to 7 February 2020, we estimated that 226 exported cases (95% confidence interval:
T6 710-822 Sentence denotes 86,449) were prevented, corresponding to a 70.4% reduction in incidence compared to the counterfactual scenario.
T7 823-969 Sentence denotes The reduced probability of a major epidemic ranged from 7% to 20% in Japan, which resulted in a median time delay to a major epidemic of two days.
T8 970-1042 Sentence denotes Depending on the scenario, the estimated delay may be less than one day.
T9 1043-1253 Sentence denotes As the delay is small, the decision to control travel volume through restrictions on freedom of movement should be balanced between the resulting estimated epidemiological impact and predicted economic fallout.
T10 1255-1257 Sentence denotes 1.
T11 1258-1270 Sentence denotes Introduction
T12 1271-1402 Sentence denotes By early February 2020, it was evident that the incidence of novel coronavirus infections (COVID-19) was growing exponentially [1].
T13 1403-1557 Sentence denotes Accelerated by human migration, exported cases have been reported in various regions of the world, including Europe, Asia, North America, and Oceania [2].
T14 1558-1856 Sentence denotes To minimize the rapid growth of cases via human-to-human transmission [3,4,5], the government of China suspended all modes of transportation to and from Wuhan on 23 January 2020—including vehicles, trains, and flights—expecting that the intervention would prevent further spread of the disease [6].
T15 1857-2136 Sentence denotes As of 12 February 2020, two additional cities outside of Hubei Province—Wenzhou (Zhejiang Province) and Shenzhen (Guangdong Province)—have been placed on complete lockdown (i.e., no cross-border movement to and from the closed city) to prevent further spatial spread of COVID-19.
T16 2137-2213 Sentence denotes To our knowledge, such drastic movement restrictions are a historical first.
T17 2214-2539 Sentence denotes Since Wuhan was placed on lockdown, travel restriction and border control have been implemented by various countries, either as: (i) complete travel bans, (ii) travel restriction and quarantine—which allows for restriction of healthy individuals, (iii) entry screening for all incoming travelers, or some combination thereof.
T18 2540-2782 Sentence denotes Most countermeasures are in line with (ii) and (iii), aside from the three cities on complete lockdown, while some countries at high risk refused any entry from China (e.g., Australia) or those from Hubei and Zhejiang provinces (e.g., Japan).
T19 2783-3032 Sentence denotes All travel arrangements including tourist tours outbound from China (to international destinations) organized by Chinese travel agencies were cancelled, and all non-urgent travel with business purposes both inbound and outbound were greatly reduced.
T20 3033-3236 Sentence denotes The effectiveness of quarantine (i.e., lockdown) measures to prevent the spread of an epidemic due to a novel infectious pathogen where no vaccine is available has often been a subject of debate [7,8,9].
T21 3237-3323 Sentence denotes Under ordinary circumstances, border control efforts do not go beyond entry screening.
T22 3324-3723 Sentence denotes However, during the epidemic of severe acute respiratory syndrome (SARS) in 2002–2003, although entry screening at airports and other key locations was adopted, in most countries its effectiveness was estimated to be very limited due to the relatively long incubation period and low prevalence of SARS, which resulted in extremely low positive predictive values at screening locations [10,11,12,13].
T23 3724-3858 Sentence denotes In the ongoing COVID-19 epidemic, many countries have accompanied regular entry screening with drastic changes in travel restrictions.
T24 3859-4062 Sentence denotes Although the effectiveness of entry screening is likely very limited as already shown elsewhere [14], the epidemiological impact of the change in movement restrictions has yet to be explicitly evaluated.
T25 4063-4223 Sentence denotes In this study, we quantify the impact of the drastic reduction in travel volume—resulting from movement restrictions—on the transmission dynamics outside China.
T26 4224-4417 Sentence denotes We aim to estimate reductions in the number of exported cases, probability of an outbreak occurring outside China, and any time delay to a major epidemic that may be gained with these policies.
T27 4418-4551 Sentence denotes We use the example of Japan, the country in Asia that receives the largest number of visitors from China, to calculate our estimates.
T28 4553-4555 Sentence denotes 2.
T29 4556-4563 Sentence denotes Methods
T30 4565-4569 Sentence denotes 2.1.
T31 4570-4590 Sentence denotes Epidemiological Data
T32 4591-4767 Sentence denotes An epidemiological dataset of confirmed cases with COVID-19 infection diagnosed outside China was collected from government and news websites quoting official outbreak reports.
T33 4768-4844 Sentence denotes For each case, the date of reporting and country of diagnosis were recorded.
T34 4845-4967 Sentence denotes The data included only cases diagnosed outside China, but for whom infection may have occurred either in or outside China.
T35 4968-5030 Sentence denotes The dataset is available as Supplementary Material (Table S1).
T36 5031-5184 Sentence denotes All cases were confirmed using reverse transcriptase polymerase chain reaction (RT-PCR) apart from two cases in Australia that were clinically diagnosed.
T37 5185-5245 Sentence denotes The endpoint for data collection was set at 6 February 2020.
T38 5247-5251 Sentence denotes 2.2.
T39 5252-5269 Sentence denotes Statistical Model
T40 5270-5369 Sentence denotes We considered the impact of reduced travel volumes on COVID-19 transmission dynamics outside China.
T41 5370-5534 Sentence denotes Specifically, we quantified the impact on: (i) the number of exported cases, (ii) the probability of a major epidemic, and (iii) the time delay to a major epidemic.
T42 5536-5542 Sentence denotes 2.2.1.
T43 5543-5575 Sentence denotes Reduced Number of Exported Cases
T44 5576-5646 Sentence denotes Figure 1 shows the observed number of infections in and outside China.
T45 5647-5715 Sentence denotes The first exported case in Thailand was reported on 13 January 2020.
T46 5716-5855 Sentence denotes Assuming the epidemic start date is set at 1 December 2019 (Day 0), the city of Wuhan was put in lockdown from Day 53 (or 23 January 2020).
T47 5856-6036 Sentence denotes Considering that the mean incubation period of COVID-19 approximately is 5 days, the impact of reduced travel volumes would start to be interpretable from Day 58 (28 January 2020).
T48 6037-6155 Sentence denotes We used data from Day 43 (13 January) onwards because the first case diagnosed outside China was reported on that day.
T49 6156-6239 Sentence denotes To estimate the reduced volume of exported cases, we employ a counterfactual model.
T50 6240-6501 Sentence denotes If we let c(t) be the incidence of exported cases on Day t, Poisson regression was used to fit the following model through Day 57:(1) E(c(t))=c0exp(rt), where c0 is the initial value at t = 0 and r is the exponential growth rate of exported cases outside China.
T51 6502-6630 Sentence denotes Using the estimated parameters and their covariance matrix, we obtain the expected number of exported cases from Day 58 onwards.
T52 6631-6793 Sentence denotes Supposing that h(t) is the observed number of cases on day t, the reduced travel volume of exported cases by Day 67 is calculated as:(2) V=∑t=5867(h(t)−E(c(t))). 
T53 6795-6801 Sentence denotes 2.2.2.
T54 6802-6850 Sentence denotes Reduced Probability of a Major Epidemic Overseas
T55 6851-7143 Sentence denotes We assumed that the distribution of the number of secondary cases generated by a single primary case follows a negative binomial distribution with the basic reproduction number R0, i.e., the average number of secondary cases generated by a single primary case, and the dispersion parameter k.
T56 7144-7260 Sentence denotes The probability of extinction π defined by the first generating moment [15] is then modeled as:(3) π=1(1+R0k(1−π))k.
T57 7261-7391 Sentence denotes R0 is estimated to range from 1.5 to 3.7, and here we adopt 1.5, 2.2, and 3.7 as plausible values for our calculations [16,17,18].
T58 7392-7482 Sentence denotes The value of k, a dispersion parameter, is assumed to be 0.54 as estimated elsewhere [17].
T59 7483-7611 Sentence denotes Supposing that there are n untraced cases that were independently introduced, the probability of a major epidemic is:(4) p=1−πn.
T60 7612-7792 Sentence denotes Now we compare two scenarios: the observed data as influenced by the reduction in travel volume, and a counterfactual scenario in which travel volume reduction does not take place.
T61 7793-7958 Sentence denotes The cumulative number of exported COVID-19 cases observed in the former scenario is denoted m, while m¯ describes the number of cases in the counterfactual scenario.
T62 7959-8037 Sentence denotes This leads to the following sums:(5) m=∑t=5867h(t), and (6) m¯=∑t=5867E(c(t)).
T63 8038-8125 Sentence denotes Accordingly, the reduced probability of a major epidemic is calculated as:(7) ε=πm−πm¯.
T64 8126-8267 Sentence denotes It should be noted that the probability of a major epidemic is evaluated at the country level, and only results for Japan are presented here.
T65 8268-8379 Sentence denotes Whereas, the proposed method can equally handle the probability of a major epidemic for each importing country.
T66 8380-8646 Sentence denotes For the computation, we first subtracted m¯, the integral of E(c(t)), by the integral of h(t), assuming that all cases h(t) were already traced, and then we multiplied the difference by 0.9, 0.7, or 0.5 if only 10%, 30%, or 50% of contacts were traced, respectively.
T67 8647-8796 Sentence denotes For m, we accounted for three symptomatic cases that were regarded as locally acquired infections in reports and diagnosed between Day 58 and Day 67.
T68 8797-8938 Sentence denotes Assuming that the asymptomatic ratio was 50% [19], we considered that in total there were m = 6 untraced cases including the diagnosed cases.
T69 8940-8946 Sentence denotes 2.2.3.
T70 8947-9020 Sentence denotes Time Delay to a Major Epidemic Gained from the Reduction in Travel Volume
T71 9021-9212 Sentence denotes Lastly, we measured the time delay to a major epidemic gained from the reduction in travel volume using the hazard function of a major epidemic, λ(t), in the absence of travel volume changes.
T72 9213-9349 Sentence denotes We model the probability of a major epidemic by time t in the absence of travel volume reduction as follows:(8) H0(t)=1−exp(−∫0tλ(s)ds).
T73 9350-9526 Sentence denotes In the presence of travel volume reduction, the hazard is reduced by the relative reduction factor in the probability of a major epidemic: (9) H1(t)=1−exp(−1−πm1−πm¯∫0tλ(s)ds).
T74 9527-9596 Sentence denotes Here, we consider the median time to a major epidemic in (8) and (9).
T75 9597-9698 Sentence denotes Since an exponential growth of cases has been observed, we let the hazard be an exponential function.
T76 9699-9913 Sentence denotes Then, the integral of the hazard function holds the form: C⋅(exp(rt)−1), where C is a constant (assumed to be one for the following calculation), and r is the exponential growth rate estimated at 0.14 per day [16].
T77 9914-9979 Sentence denotes The doubling time is then calculated as td = ln(2)/r = 4.95 days.
T78 9980-10115 Sentence denotes The difference in the median date between (8) and (9) is thus described as:(10) D=ln(C1−πm1−πm¯+ln(2)C1−πm1−πm¯+ln(2)1−πm1−πm¯)tdln(2).
T79 10116-10206 Sentence denotes All computations were conducted in JMP Version 14.0 (SAS Institute, Cary, North Carolina).
T80 10207-10280 Sentence denotes The confidence intervals were calculated using profile likelihood method.
T81 10282-10284 Sentence denotes 3.
T82 10285-10292 Sentence denotes Results
T83 10293-10451 Sentence denotes As Figure 1 shows, a total of 242 cases were diagnosed and reported outside of China in 27 countries between Day 43 (13 January) and Day 67 (6 February 2020).
T84 10452-10585 Sentence denotes Of these, 140 cases were considered to have been infected in China and 102 cases were considered to have been infected outside China.
T85 10586-10756 Sentence denotes The country with the highest number of exported cases infected inside China was Thailand (n = 20), followed by Singapore (n = 18), Australia (n = 14), and Japan (n = 12).
T86 10757-10912 Sentence denotes Among 242 cases, we specifically focused on 140 cases who traveled while movement restrictions were in place and were likely affected by said restrictions.
T87 10913-11015 Sentence denotes Figure 2 compares the observed and expected number of cases diagnosed outside China by date of report.
T88 11016-11198 Sentence denotes The exponential growth of cases is consistent with the exponential growth of incidence in China, which qualitatively captures the observed pattern of incidence from Day 43 to Day 57.
T89 11199-11343 Sentence denotes Using the predicted curve, the expected number of cases between Day 58 (28 January 2020) and Day 67 was 321 cases (95% confidence interval [CI]:
T90 11344-11354 Sentence denotes 181, 544).
T91 11355-11448 Sentence denotes In the empirical observation, a total of 95 cases were diagnosed, including 8 cases in Japan.
T92 11449-11549 Sentence denotes That is, following the time that Wuhan city was put in lockdown, we estimate that 226 cases (95% CI:
T93 11550-11611 Sentence denotes 86, 449) were prevented from being exported across the world.
T94 11612-11709 Sentence denotes This corresponds to a reduction in the number of exported cases of 70.4% during that time period.
T95 11710-11789 Sentence denotes As another measure of impact, we estimated the probability of a major epidemic.
T96 11790-12056 Sentence denotes Figure 3A shows the probability of a major epidemic with three different levels of transmissibility assuming an R0 of 1.5, 2.2, or 3.7, and three different levels of contact tracing resulting in a success rate of isolation of the traced contacts of 10%, 30%, or 50%.
T97 12057-12168 Sentence denotes Without the reduction in the travel volume, the probability of a major epidemic exceeded 90% in most scenarios.
T98 12169-12333 Sentence denotes However, considering there have been six untraced cases in Japan under travel restrictions, the probability of a major epidemic more broadly ranged from 56% to 98%.
T99 12334-12394 Sentence denotes Figure 3B shows the reduced probability of a major epidemic.
T100 12395-12551 Sentence denotes Assuming an R0 of 2.2, the absolute risk reduction was 7%, 12%, and 20%, respectively, for contact tracing levels leading to isolation at 10%, 30%, and 50%.
T101 12552-12623 Sentence denotes Figure 3B describes the absolute reduction in risk of a major epidemic.
T102 12624-12700 Sentence denotes The largest reduction was 37% when R0 = 1.5 and 50% of contacts were traced.
T103 12701-12777 Sentence denotes The smallest reduction was 1% when R0 = 3.7 and 10% of contacts were traced.
T104 12778-12901 Sentence denotes Using those estimated relative reductions, the median time of delay gained by travel volume reduction is shown in Figure 4.
T105 12902-13014 Sentence denotes The time delay of a major epidemic was less than one day when R0 is 2.2 and 3.7, and 1 to 2 days when R0 is 1.5.
T106 13016-13018 Sentence denotes 4.
T107 13019-13029 Sentence denotes Discussion
T108 13030-13227 Sentence denotes The present study explicitly quantified the epidemiological impact of reduced travel volume to and from China on the transmission dynamics of COVID-19 outside China using simple statistical models.
T109 13228-13426 Sentence denotes The three epidemiological outcomes we measured on the example of Japan were: (i) the number of exported cases, (ii) the probability of a major epidemic, and (iii) the time delay to a major epidemic.
T110 13427-13702 Sentence denotes When the volume of exported cases outside China was considered to have been reduced by 70.4%, the probability of a major epidemic was estimated to be reduced by 7%–20% in Japan, and a 2-day delay was gained in the estimated time to a major epidemic between Day 58 and Day 67.
T111 13703-13796 Sentence denotes The reduced volume of exported cases was estimated to be as large as 226 cases outside China.
T112 13797-13955 Sentence denotes Our estimate is consistent with an assessment by Chinazzi et al. [20], which indicated that the exported cases would be reduced by 80% by the end of February.
T113 13956-14154 Sentence denotes In addition to appropriately quantifying the impact on prevention of exported cases, we have estimated the median time delay to a major epidemic assuming plausible values of R0 at 1.5, 2.2, and 3.7.
T114 14155-14315 Sentence denotes With reduced probability of a major epidemic, the time delay to a major epidemic was estimated at a maximum of 2 days in Japan and a minimum of less than 1 day.
T115 14316-14458 Sentence denotes The estimated effect of the delay to a major epidemic outside China is smaller than what was anticipated for cities in China other than Wuhan.
T116 14459-14576 Sentence denotes Tian et al. [21] estimated that the reduction in travel volume led to a 2.9-day delay in the spatial spread in China.
T117 14577-14814 Sentence denotes To our knowledge, the present study is the first to have used simple stochastic process models to explicitly estimate the time delay to a major epidemic in Japan that gained by the drastic reduction in travel volume in and outside China.
T118 14815-15089 Sentence denotes Although the COVID-19 epidemic was declared a public health emergency of international concern (PHEIC) by the World Health Organization (WHO), the WHO specifically called upon member states to not restrict the freedom of movement of persons as a result of the epidemic [22].
T119 15090-15225 Sentence denotes However, member states did not adhere to this recommendation and have varyingly restricted the free movement of people from China [23].
T120 15226-15325 Sentence denotes Such restrictions were most drastic in China, where some cities were put on complete lockdown [23].
T121 15326-15503 Sentence denotes These political decisions regarding movement restrictions must balance the expected epidemiological impact with predicted economic burden—the latter of which we did not examine.
T122 15504-15882 Sentence denotes While securing a few days delay to epidemic spread in China would secure time for healthcare systems in Chinese cities that have not yet been affected to prepare for the appearance of case-patients [21], the impact of such a delay outside China is not substantial enough to accomplish meaningful prevention, such as the development, manufacturing, and distribution of a vaccine.
T123 15883-16031 Sentence denotes In modern history, this epidemic is perhaps the first instance where a large city populated with more than 10 million people was placed on lockdown.
T124 16032-16314 Sentence denotes While countermeasures to prevent epidemic spread require the sort of strong political decisions that resulted in strong movement restrictions, our study indicated that the delay to a major epidemic in countries other than China (using Japan as an example) was unfortunately minimal.
T125 16315-16562 Sentence denotes While the complete lockdown of Wuhan, Wenzhou, and Shenzhen likely helped reduce case incidence outside of these cities, migration from other cities in China could still contribute to the spread of infection locally and internationally [24,25,26].
T126 16563-16768 Sentence denotes To quantify the epidemiological impact for the entire course of the epidemic more precisely, a more detailed analysis using dynamic datasets, e.g., airline passenger data, should be explored in the future.
T127 16769-16820 Sentence denotes Limitations of the present study must be discussed.
T128 16821-16950 Sentence denotes First, the present study relied on the volume of cases diagnosed outside China and did not directly examine human migration data.
T129 16951-17070 Sentence denotes Second, we were unable to classify exported cases into those who acquired infection in Hubei versus elsewhere in China.
T130 17071-17124 Sentence denotes Having this information may offer additional insight.
T131 17125-17319 Sentence denotes Third, several rough assumptions (e.g., a fixed time delay from illness onset to reporting at 5 days) were imposed, and the results presented here should be regarded as a preliminary assessment.
T132 17321-17323 Sentence denotes 5.
T133 17324-17335 Sentence denotes Conclusions
T134 17336-17595 Sentence denotes In conclusion, the present study explored the impact of reduced travel volume to and from China on the transmission dynamics of COVID-19 outside China, estimating that the time delay to a major epidemic was on the order of 2 days by 7 February 2020 for Japan.
T135 17596-17812 Sentence denotes A relatively short time period of gain is likely due to high contingency of the SARS-CoV-2, and also that the substantial fraction of infected individuals with milder symptoms are likely to escape the border control.
T136 17813-17916 Sentence denotes Our proposed approach was kept simple and will be applicable to other emerging epidemics in the future.
T137 17918-17941 Sentence denotes Supplementary Materials
T138 17942-18031 Sentence denotes The following is available online at https://www.mdpi.com/2077-0383/9/2/601/s1, Table S1:
T139 18032-18076 Sentence denotes Number of confirmed cases by date of report.
T140 18077-18113 Sentence denotes Click here for additional data file.
T141 18115-18135 Sentence denotes Author Contributions
T142 18136-18240 Sentence denotes H.N. conceived the study, A.A. and T.K. collected the data and analyzed the empirical data using models.
T143 18241-18286 Sentence denotes All authors participated in the study design.
T144 18287-18329 Sentence denotes A.A, T.K. and H.N. drafted the manuscript.
T145 18330-18398 Sentence denotes All authors gave comments on the earlier versions of the manuscript.
T146 18399-18475 Sentence denotes All authors have read and agreed to the published version of the manuscript.
T147 18477-18484 Sentence denotes Funding
T148 18485-18687 Sentence denotes H.N. received funding from the Japan Agency for Medical Research and Development (AMED) [grant number: JP18fk0108050]; the Japan Society for the Promotion of Science (JSPS) KAKENHI [grant numbers, H.N.:
T149 18688-18736 Sentence denotes 17H04701, 17H05808, 18H04895 and 19H01074; R.K.:
T150 18737-18751 Sentence denotes 18J21587; AS.:
T151 18752-18878 Sentence denotes 19K24159], the Inamori Foundation, and the Japan Science and Technology Agency (JST) CREST program [grant number: JPMJCR1413].
T152 18879-19006 Sentence denotes SMJ and NML receive graduate study scholarships from the Ministry of Education, Culture, Sports, Science and Technology, Japan.
T153 19008-19029 Sentence denotes Conflicts of Interest
T154 19030-19075 Sentence denotes The authors declare no conflicts of interest.
T155 19077-19145 Sentence denotes Figure 1 Number of confirmed cases outside China by date of report.
T156 19146-19240 Sentence denotes The bars measure the number of cases reported each day between 13 January and 6 February 2020.
T157 19241-19406 Sentence denotes The black bars represent infections that are likely to have occurred in China while the grey bars indicate infections that are likely to have occurred outside China.
T158 19407-19497 Sentence denotes Figure 2 Observed and expected number of cases diagnosed outside China by date of report.
T159 19498-19552 Sentence denotes Observed cases (dots) include those infected in China.
T160 19553-19634 Sentence denotes An exponential growth curve was fitted to the observed data from 27 January 2020.
T161 19635-19719 Sentence denotes The dashed lines represent the 95% confidence interval on and after 28 January 2020.
T162 19720-19983 Sentence denotes Figure 3 Probability of a major epidemic with various levels of transmissibility and traced contact. (A) The solid lines represent the probability of a major epidemic in the counterfactual scenario, i.e., based on the expected number of cases diagnosed in Japan.
T163 19984-20191 Sentence denotes Dashed lines represent the probability of a major epidemic in the presence of travel volume reductions, calculated using the number of traced and untraced cases was 6 in total in Japan from Day 58 to Day 67.
T164 20192-20267 Sentence denotes Contact tracing leading to isolation was assumed at three different levels:
T165 20268-20395 Sentence denotes 10%, 30%, and 50%. (B) The vertical axis represents the reduced probability of a major epidemic due to travel volume reduction.
T166 20396-20493 Sentence denotes The horizontal axis shows the proportion of cases traced, adopting the same scenarios as panel A.
T167 20494-20576 Sentence denotes Figure 4 Delay in the time to a major epidemic gained by travel volume reduction.
T168 20577-20678 Sentence denotes The median delay is shown for Japan, using relative reduction in the probability of a major epidemic.
T169 20679-20823 Sentence denotes The vertical axis represents the time delay to a major epidemic (in days), and the horizontal axis represents the proportion of contacts traced.
T170 20824-20901 Sentence denotes Each shaped dot represents different values of the basic reproduction number.

2_test

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