PMC:7073332 / 4808-6198 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7073332","sourcedb":"PMC","sourceid":"7073332","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7073332","text":"Viruses (including HCoV) require host cellular factors for successful replication during infection1. Systematic identification of virus–host protein–protein interactions (PPIs) offers an effective way toward elucidating the mechanisms of viral infection15,16. Subsequently, targeting cellular antiviral targets, such as virus–host interactome, may offer a novel strategy for the development of effective treatments for viral infections1, including SARS-CoV17, MERS-CoV17, Ebola virus18, and Zika virus14,19–21. We recently presented an integrated antiviral drug discovery pipeline that incorporated gene-trap insertional mutagenesis, known functional drug–gene network, and bioinformatics analyses14. This methodology allows to identify several candidate repurposable drugs for Ebola virus11,14. Our work over the last decade has demonstrated how network strategies can, for example, be used to identify effective repurposable drugs13,22–27 and drug combinations28 for multiple human diseases. For example, network-based drug–disease proximity sheds light on the relationship between drugs (e.g., drug targets) and disease modules (molecular determinants in disease pathobiology modules within the PPIs), and can serve as a useful tool for efficient screening of potentially new indications for approved drugs, as well as drug combinations, as demonstrated in our recent studies13,23,27,28.","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"158","span":{"begin":19,"end":23},"obj":"Species"},{"id":"159","span":{"begin":89,"end":98},"obj":"Disease"},{"id":"160","span":{"begin":238,"end":253},"obj":"Disease"},{"id":"161","span":{"begin":419,"end":435},"obj":"Disease"}],"attributes":[{"id":"A158","pred":"tao:has_database_id","subj":"158","obj":"Tax:694448"},{"id":"A159","pred":"tao:has_database_id","subj":"159","obj":"MESH:D007239"},{"id":"A160","pred":"tao:has_database_id","subj":"160","obj":"MESH:D001102"},{"id":"A161","pred":"tao:has_database_id","subj":"161","obj":"MESH:D001102"},{"subj":"158","pred":"source","obj":"LitCovid-PubTator"},{"subj":"159","pred":"source","obj":"LitCovid-PubTator"},{"subj":"160","pred":"source","obj":"LitCovid-PubTator"},{"subj":"161","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T14","span":{"begin":141,"end":148},"obj":"Body_part"},{"id":"T15","span":{"begin":149,"end":156},"obj":"Body_part"},{"id":"T16","span":{"begin":599,"end":603},"obj":"Body_part"},{"id":"T17","span":{"begin":656,"end":660},"obj":"Body_part"}],"attributes":[{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma74402"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T21","span":{"begin":448,"end":452},"obj":"Disease"},{"id":"T22","span":{"begin":472,"end":477},"obj":"Disease"},{"id":"T23","span":{"begin":491,"end":495},"obj":"Disease"},{"id":"T24","span":{"begin":778,"end":783},"obj":"Disease"}],"attributes":[{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A22","pred":"mondo_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/MONDO_0005737"},{"id":"A23","pred":"mondo_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/MONDO_0018661"},{"id":"A24","pred":"mondo_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/MONDO_0005737"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T26","span":{"begin":0,"end":7},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T27","span":{"begin":130,"end":135},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T28","span":{"begin":320,"end":325},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T29","span":{"begin":354,"end":355},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T30","span":{"begin":599,"end":603},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T31","span":{"begin":656,"end":660},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T32","span":{"begin":826,"end":829},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T33","span":{"begin":938,"end":940},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T34","span":{"begin":978,"end":983},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T35","span":{"begin":1222,"end":1223},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T42","span":{"begin":141,"end":148},"obj":"Chemical"},{"id":"T43","span":{"begin":149,"end":156},"obj":"Chemical"},{"id":"T44","span":{"begin":293,"end":302},"obj":"Chemical"},{"id":"T45","span":{"begin":547,"end":561},"obj":"Chemical"},{"id":"T46","span":{"begin":547,"end":556},"obj":"Chemical"},{"id":"T47","span":{"begin":557,"end":561},"obj":"Chemical"},{"id":"T48","span":{"begin":651,"end":655},"obj":"Chemical"},{"id":"T49","span":{"begin":768,"end":773},"obj":"Chemical"},{"id":"T50","span":{"begin":945,"end":949},"obj":"Chemical"},{"id":"T51","span":{"begin":1021,"end":1025},"obj":"Chemical"},{"id":"T52","span":{"begin":1084,"end":1089},"obj":"Chemical"},{"id":"T53","span":{"begin":1097,"end":1101},"obj":"Chemical"},{"id":"T54","span":{"begin":1304,"end":1309},"obj":"Chemical"},{"id":"T55","span":{"begin":1322,"end":1326},"obj":"Chemical"}],"attributes":[{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A43","pred":"chebi_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A44","pred":"chebi_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/CHEBI_22587"},{"id":"A45","pred":"chebi_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/CHEBI_36044"},{"id":"A46","pred":"chebi_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/CHEBI_22587"},{"id":"A47","pred":"chebi_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A48","pred":"chebi_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A49","pred":"chebi_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A50","pred":"chebi_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A51","pred":"chebi_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A52","pred":"chebi_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A53","pred":"chebi_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A55","pred":"chebi_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"subj":"T42","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T43","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T44","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T45","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T46","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T51","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T52","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T53","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T55","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T30","span":{"begin":0,"end":100},"obj":"Sentence"},{"id":"T31","span":{"begin":101,"end":259},"obj":"Sentence"},{"id":"T32","span":{"begin":260,"end":510},"obj":"Sentence"},{"id":"T33","span":{"begin":511,"end":700},"obj":"Sentence"},{"id":"T34","span":{"begin":701,"end":795},"obj":"Sentence"},{"id":"T35","span":{"begin":796,"end":993},"obj":"Sentence"},{"id":"T36","span":{"begin":994,"end":1390},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T30","pred":"source","obj":"LitCovid-sentences"},{"subj":"T31","pred":"source","obj":"LitCovid-sentences"},{"subj":"T32","pred":"source","obj":"LitCovid-sentences"},{"subj":"T33","pred":"source","obj":"LitCovid-sentences"},{"subj":"T34","pred":"source","obj":"LitCovid-sentences"},{"subj":"T35","pred":"source","obj":"LitCovid-sentences"},{"subj":"T36","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32194980-26868298-19614154","span":{"begin":98,"end":99},"obj":"26868298"},{"id":"32194980-30984872-19614155","span":{"begin":253,"end":255},"obj":"30984872"},{"id":"32194980-26868298-19614156","span":{"begin":435,"end":436},"obj":"26868298"},{"id":"32194980-24841273-19614157","span":{"begin":456,"end":458},"obj":"24841273"},{"id":"32194980-24841273-19614158","span":{"begin":468,"end":470},"obj":"24841273"},{"id":"32194980-27632082-19614159","span":{"begin":501,"end":503},"obj":"27632082"},{"id":"32194980-27476412-19614160","span":{"begin":504,"end":506},"obj":"27476412"},{"id":"32194980-27571349-19614160","span":{"begin":504,"end":506},"obj":"27571349"},{"id":"32194980-27632082-19614161","span":{"begin":697,"end":699},"obj":"27632082"},{"id":"32194980-27692879-19614162","span":{"begin":789,"end":791},"obj":"27692879"},{"id":"32194980-27632082-19614163","span":{"begin":792,"end":794},"obj":"27632082"},{"id":"32194980-30002366-19614164","span":{"begin":932,"end":934},"obj":"30002366"},{"id":"32194980-22589709-19614165","span":{"begin":935,"end":937},"obj":"22589709"},{"id":"32194980-31375661-19614165","span":{"begin":935,"end":937},"obj":"31375661"},{"id":"32194980-31116390-19614165","span":{"begin":935,"end":937},"obj":"31116390"},{"id":"32194980-30867426-19614166","span":{"begin":962,"end":964},"obj":"30867426"},{"id":"32194980-30002366-19614167","span":{"begin":1378,"end":1380},"obj":"30002366"},{"id":"32194980-31375661-19614168","span":{"begin":1381,"end":1383},"obj":"31375661"},{"id":"32194980-30867426-19614169","span":{"begin":1387,"end":1389},"obj":"30867426"}],"attributes":[{"subj":"32194980-26868298-19614154","pred":"source","obj":"2_test"},{"subj":"32194980-30984872-19614155","pred":"source","obj":"2_test"},{"subj":"32194980-26868298-19614156","pred":"source","obj":"2_test"},{"subj":"32194980-24841273-19614157","pred":"source","obj":"2_test"},{"subj":"32194980-24841273-19614158","pred":"source","obj":"2_test"},{"subj":"32194980-27632082-19614159","pred":"source","obj":"2_test"},{"subj":"32194980-27476412-19614160","pred":"source","obj":"2_test"},{"subj":"32194980-27571349-19614160","pred":"source","obj":"2_test"},{"subj":"32194980-27632082-19614161","pred":"source","obj":"2_test"},{"subj":"32194980-27692879-19614162","pred":"source","obj":"2_test"},{"subj":"32194980-27632082-19614163","pred":"source","obj":"2_test"},{"subj":"32194980-30002366-19614164","pred":"source","obj":"2_test"},{"subj":"32194980-22589709-19614165","pred":"source","obj":"2_test"},{"subj":"32194980-31375661-19614165","pred":"source","obj":"2_test"},{"subj":"32194980-31116390-19614165","pred":"source","obj":"2_test"},{"subj":"32194980-30867426-19614166","pred":"source","obj":"2_test"},{"subj":"32194980-30002366-19614167","pred":"source","obj":"2_test"},{"subj":"32194980-31375661-19614168","pred":"source","obj":"2_test"},{"subj":"32194980-30867426-19614169","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#e0ec93","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#de93ec"},{"id":"LitCovid-PD-MONDO","color":"#93ecc4"},{"id":"LitCovid-PD-CLO","color":"#ecaa93"},{"id":"LitCovid-PD-CHEBI","color":"#9395ec"},{"id":"LitCovid-sentences","color":"#afec93"},{"id":"2_test","color":"#ec93c9"}]}]}}