PMC:7073332 / 40662-41302
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1115 | 33-38 | Species | denotes | human | Tax:9606 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T199 | 275-282 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T279 | 9-10 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T280 | 33-38 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T281 | 68-69 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T282 | 79-81 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T283 | 185-191 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T284 | 408-417 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
| T285 | 575-577 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | AP |
| T286 | 578-580 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T453 | 275-282 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T454 | 575-577 | Chemical | denotes | AP | http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686 |
| T457 | 578-580 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 408-417 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T254 | 0-640 | Sentence | denotes | To build a comprehensive list of human PPIs, we assembled data from a total of 18 bioinformatics and systems biology databases with five types of experimental evidence: (i) binary PPIs tested by high-throughput yeast-two-hybrid (Y2H) systems; (ii) binary, physical PPIs from protein 3D structures; (iii) kinase-substrate interactions by literature-derived low-throughput or high-throughput experiments; (iv) signaling network by literature-derived low-throughput experiments; and (v) literature-curated PPIs identified by affinity purification followed by mass spectrometry (AP-MS), Y2H, or by literature-derived low-throughput experiments. |