PMC:7073332 / 38269-38876
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1087 | 350-353 | Gene | denotes | ebi | Gene:6907 |
| 1088 | 101-110 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 1089 | 111-121 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T181 | 23-26 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T182 | 41-48 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T183 | 122-129 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T184 | 211-217 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T185 | 232-239 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T186 | 529-536 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T157 | 111-119 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T271 | 200-202 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T431 | 23-26 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T432 | 41-48 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T433 | 232-239 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T434 | 484-488 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
| T435 | 529-536 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T436 | 598-602 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T236 | 0-204 | Sentence | denotes | In total, we collected DNA sequences and protein sequences for 15 HCoVs, including three most recent 2019-nCoV/SARS-CoV-2 genomes, from the NCBI GenBank database (28 January 2020, Supplementary Table S1). |
| T237 | 205-386 | Sentence | denotes | Whole-genome alignment and protein sequence identity calculation were performed by Multiple Sequence Alignment in EMBL-EBI database (https://www.ebi.ac.uk/) with default parameters. |
| T238 | 387-524 | Sentence | denotes | The neighbor joining (NJ) tree was computed from the pairwise phylogenetic distance matrix using MEGA X84 with 1000 bootstrap replicates. |
| T239 | 525-607 | Sentence | denotes | The protein alignment and phylogenetic tree of HCoVs were constructed by MEGA X84. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32194980-29722887-19614248 | 490-492 | 29722887 | denotes | 84 |
| 32194980-29722887-19614249 | 604-606 | 29722887 | denotes | 84 |