PMC:7073332 / 38224-38876
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1087 | 395-398 | Gene | denotes | ebi | Gene:6907 |
| 1088 | 146-155 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 1089 | 156-166 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T180 | 0-6 | Body_part | denotes | Genome | http://purl.org/sig/ont/fma/fma84116 |
| T181 | 68-71 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T182 | 86-93 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T183 | 167-174 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T184 | 256-262 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T185 | 277-284 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T186 | 574-581 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T157 | 156-164 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T271 | 245-247 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T431 | 68-71 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T432 | 86-93 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T433 | 277-284 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T434 | 529-533 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
| T435 | 574-581 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T436 | 643-647 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T235 | 0-44 | Sentence | denotes | Genome information and phylogenetic analysis |
| T236 | 45-249 | Sentence | denotes | In total, we collected DNA sequences and protein sequences for 15 HCoVs, including three most recent 2019-nCoV/SARS-CoV-2 genomes, from the NCBI GenBank database (28 January 2020, Supplementary Table S1). |
| T237 | 250-431 | Sentence | denotes | Whole-genome alignment and protein sequence identity calculation were performed by Multiple Sequence Alignment in EMBL-EBI database (https://www.ebi.ac.uk/) with default parameters. |
| T238 | 432-569 | Sentence | denotes | The neighbor joining (NJ) tree was computed from the pairwise phylogenetic distance matrix using MEGA X84 with 1000 bootstrap replicates. |
| T239 | 570-652 | Sentence | denotes | The protein alignment and phylogenetic tree of HCoVs were constructed by MEGA X84. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32194980-29722887-19614248 | 535-537 | 29722887 | denotes | 84 |
| 32194980-29722887-19614249 | 649-651 | 29722887 | denotes | 84 |