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PMC:7068984 / 7995-10717 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
309 452-459 Gene denotes ORF1a/b Gene:43740578
310 490-494 Gene denotes pp1a Gene:5499
311 1542-1546 Gene denotes NSP7 Gene:43740578
312 1616-1620 Gene denotes NSP2 Gene:43740578
313 1622-1626 Gene denotes NSP3 Gene:43740578
314 1628-1633 Gene denotes spike Gene:43740568
315 1743-1747 Gene denotes NSP2 Gene:43740578
316 1752-1756 Gene denotes NSP3 Gene:43740578
317 1555-1563 Gene denotes envelope Gene:43740570
318 2531-2532 Gene denotes S Gene:43740568
319 2479-2480 Gene denotes S Gene:43740568
320 35-42 Species denotes patient Tax:9606
321 116-127 Species denotes coronavirus Tax:11118
322 150-160 Species denotes SARS-CoV-2 Tax:2697049
323 185-193 Species denotes SARS-CoV Tax:694009
324 198-206 Species denotes MERS-CoV Tax:1335626
325 319-323 Species denotes CoVs Tax:11118
326 1076-1084 Species denotes SARS-CoV Tax:694009
327 1197-1202 Species denotes human Tax:9606
328 1241-1249 Species denotes SARS-CoV Tax:694009
329 1254-1262 Species denotes MERS-CoV Tax:1335626
330 1271-1281 Species denotes SARS-CoV-2 Tax:2697049
331 1313-1317 Species denotes CoVs Tax:11118
332 1390-1400 Species denotes SARS-CoV-2 Tax:2697049
333 1416-1425 Species denotes SARS-CoVs Tax:694009
334 1827-1837 Species denotes SARS-CoV-2 Tax:2697049
335 1853-1859 Species denotes people Tax:9606
336 1931-1941 Species denotes SARS-CoV-2 Tax:2697049
337 1946-1954 Species denotes SARS-CoV Tax:694009
338 2093-2101 Species denotes patients Tax:9606
339 2140-2150 Species denotes SARS-CoV-2 Tax:2697049
340 2181-2189 Species denotes patients Tax:9606
341 2242-2252 Species denotes SARS-CoV-2 Tax:2697049
342 2376-2386 Species denotes SARS-CoV-2 Tax:2697049
343 2448-2458 Species denotes SARS-CoV-2 Tax:2697049
344 2656-2673 Species denotes novel coronavirus Tax:2697049
345 2296-2305 Species denotes influenza Tax:11309
346 16-34 Disease denotes COVID-19 pneumonia MESH:C000657245
347 2071-2079 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T28 95-101 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T29 227-230 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T30 231-238 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T31 309-315 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T32 414-417 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T33 536-544 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T34 609-617 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T35 642-648 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T36 683-691 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T37 713-725 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T38 746-753 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T39 766-773 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 796-803 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 837-845 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T42 1108-1120 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T43 1121-1125 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T44 1263-1269 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T45 1340-1346 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T46 1378-1386 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T47 1472-1479 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T48 1500-1510 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T49 1586-1594 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T50 1634-1641 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T51 2387-2394 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T64 16-24 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T65 25-34 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T66 150-158 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T67 185-193 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T68 1076-1084 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T69 1241-1249 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T70 1271-1279 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T71 1299-1303 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T72 1390-1398 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T73 1416-1420 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T74 1772-1782 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T75 1827-1835 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 1931-1939 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 1946-1954 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 2071-2079 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 2140-2148 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 2242-2250 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 2290-2305 Disease denotes avian influenza http://purl.obolibrary.org/obo/MONDO_0018695
T82 2296-2305 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T83 2376-2384 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 2448-2456 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T65 14-15 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 44-45 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 170-172 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T68 170-172 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T69 247-249 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T70 247-249 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T71 259-261 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T72 259-261 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T73 285-288 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T74 333-334 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 354-356 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T76 458-459 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T77 636-641 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T78 1121-1125 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T79 1197-1202 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T80 1309-1312 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T81 1595-1597 http://purl.obolibrary.org/obo/CLO_0008339 denotes p6
T82 1678-1680 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T83 1762-1763 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 2339-2340 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T19 536-544 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T20 609-617 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T21 683-691 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T22 713-725 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T23 746-753 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T24 766-773 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T25 796-803 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T26 837-845 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T27 1108-1120 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T28 1378-1386 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T29 1472-1479 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T30 1500-1510 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T31 1500-1505 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T32 1506-1510 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T33 1586-1594 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T34 1634-1641 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T8 876-898 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T9 883-898 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T10 1898-1905 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism
T11 2699-2708 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T12 2699-2708 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T59 0-178 Sentence denotes Isolated from a COVID-19 pneumonia patient, a worker in the Wuhan seafood market, the complete genome of Wuhan-Hu-1 coronavirus (WHCV), one strain of SARS-CoV-2, is 29.9 kb [14].
T60 179-281 Sentence denotes While SARS-CoV and MERS-CoV have positive-sense RNA genomes of 27.9 kb and 30.1 kb, respectively [19].
T61 282-393 Sentence denotes It has been shown that the genome of CoVs contains a variable number (6–11) of open reading frames (ORFs) [20].
T62 394-618 Sentence denotes Two-thirds of viral RNA, mainly located in the first ORF (ORF1a/b) translates two polyproteins, pp1a and pp1ab, and encodes 16 non-structural proteins (NSP), while the remaining ORFs encode accessory and structural proteins.
T63 619-899 Sentence denotes The rest part of virus genome encodes four essential structural proteins, including spike (S) glycoprotein, small envelope (E) protein, matrix (M) protein, and nucleocapsid (N) protein [21], and also several accessory proteins, that interfere with the host innate immune response.
T64 900-1017 Sentence denotes Wu et al. [14] have recently performed deep meta-transcriptomic sequencing on WHCV, which contained 16 predicted NSP.
T65 1018-1216 Sentence denotes WHCV exhibits some genomic and phylogenetic similarity to SARS-CoV, particularly in the S-glycoprotein gene and receptor-binding domain (RBD), indicating the capability of direct human transmission.
T66 1217-1356 Sentence denotes Compared with the known SARS-CoV and MERS-CoV genome, SARS-CoV-2 is closer to the SARS-like bat CoVs in terms of the whole genome sequence.
T67 1357-1464 Sentence denotes Most genomic encoded proteins of SARS-CoV-2 are similar to SARS-CoVs, as well as exist certain differences.
T68 1465-1682 Sentence denotes At the protein level, there are no amino acid substitutions that occurred in NSP7, NSP13, envelope, matrix, or accessory proteins p6 and 8b, except in NSP2, NSP3, spike protein, underpinning subdomain, i.e., RBD [22].
T69 1683-1838 Sentence denotes Another recent research suggested [23] that the mutation in NSP2 and NSP3 play a role in infectious capability and differentiation mechanism of SARS-CoV-2.
T70 1839-2026 Sentence denotes This provokes people to explore the difference of the host tropism and transmission between SARS-CoV-2 and SARS-CoV or conduct further investigations on the potential therapeutic targets.
T71 2027-2199 Sentence denotes Zhang et al. [24] analyzed the genotypes of COVID-19 in different patients from several provinces and found that SARS-CoV-2 had been mutated in different patients in China.
T72 2200-2311 Sentence denotes Although the degree of diversification of SARS-CoV-2 is smaller than the mutation of H7N9 avian influenza [25].
T73 2312-2494 Sentence denotes Tang et al. [26] conducted a population genetic analyses of 103 SARS-CoV-2 genomes and classified out two prevalent evolvement types of SARS-CoV-2, L type (~ 70%) and S type (~ 30%).
T74 2495-2589 Sentence denotes The strains in L type, derived from S type, are evolutionarily more aggressive and contagious.
T75 2590-2722 Sentence denotes Thus, virologists and epidemiologists need to closely monitor the novel coronavirus, in order to inspect the virulence and epidemic.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T13 25-34 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32169119-32015508-70132197 174-176 32015508 denotes 14
32169119-27344959-70132198 277-279 27344959 denotes 19
32169119-30646565-70132199 389-391 30646565 denotes 20
32169119-30531947-70132200 805-807 30531947 denotes 21
32169119-32015508-70132201 911-913 32015508 denotes 14
32169119-25591105-70132202 2307-2309 25591105 denotes 25