PMC:7068984 / 5950-6954
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 223 | 222-232 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 224 | 298-308 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 225 | 398-402 | Species | denotes | CoVs | Tax:11118 |
| 226 | 414-422 | Species | denotes | SARS-CoV | Tax:694009 |
| 227 | 432-440 | Species | denotes | MERS-CoV | Tax:1335626 |
| 228 | 548-551 | Species | denotes | CoV | Tax:11118 |
| 229 | 634-637 | Species | denotes | CoV | Tax:11118 |
| 230 | 642-647 | Species | denotes | human | Tax:9606 |
| 231 | 648-658 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 232 | 30-63 | Disease | denotes | respiratory tract infection broke | MESH:D012141 |
| 233 | 497-505 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T22 | 30-47 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
| T23 | 474-480 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T24 | 534-540 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T25 | 584-590 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T26 | 769-776 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T4 | 30-47 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T50 | 30-57 | Disease | denotes | respiratory tract infection | http://purl.obolibrary.org/obo/MONDO_0024355 |
| T51 | 48-57 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T52 | 222-230 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T53 | 298-306 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T54 | 414-422 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T55 | 497-505 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T56 | 648-656 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T50 | 135-136 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T51 | 184-187 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T52 | 346-350 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T53 | 380-381 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T54 | 446-453 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T55 | 455-457 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T56 | 468-473 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T57 | 630-633 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T58 | 642-647 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T59 | 699-703 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T17 | 769-776 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T45 | 0-152 | Sentence | denotes | The epidemic of unknown acute respiratory tract infection broke out first in Wuhan, China, since 12 December 2019, possibly related to a seafood market. |
| T46 | 153-241 | Sentence | denotes | Several studies suggested that bat may be the potential reservoir of SARS-CoV-2 [9, 10]. |
| T47 | 242-337 | Sentence | denotes | However, there is no evidence so far that the origin of SARS-CoV-2 was from the seafood market. |
| T48 | 338-462 | Sentence | denotes | Rather, bats are the natural reservoir of a wide variety of CoVs, including SARS-CoV-like and MERS-CoV-like viruses [11–13]. |
| T49 | 463-759 | Sentence | denotes | Upon virus genome sequencing, the COVID-19 was analyzed throughout the genome to Bat CoV RaTG13 and showed 96.2% overall genome sequence identity [8], suggesting that bat CoV and human SARS-CoV-2 might share the same ancestor, although bats are not available for sale in this seafood market [14]. |
| T50 | 760-1004 | Sentence | denotes | Besides, protein sequences alignment and phylogenetic analysis [15] showed that similar residues of receptor were observed in many species, which provided more possibility of alternative intermediate hosts, such as turtles, pangolin and snacks. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T12 | 24-57 | Phenotype | denotes | acute respiratory tract infection | http://purl.obolibrary.org/obo/HP_0011948 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32169119-32004758-70132191 | 237-239 | 32004758 | denotes | 10 |
| 32169119-16278351-70132192 | 455-457 | 16278351 | denotes | 11 |
| 32169119-30634396-70132192 | 455-457 | 30634396 | denotes | 11 |
| 32169119-16195424-70132192 | 455-457 | 16195424 | denotes | 11 |
| 32169119-32015507-70132193 | 610-611 | 32015507 | denotes | 8 |
| 32169119-32015508-70132194 | 755-757 | 32015508 | denotes | 14 |