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PMC:7068984 / 5907-7954 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
223 265-275 Species denotes SARS-CoV-2 Tax:2697049
224 341-351 Species denotes SARS-CoV-2 Tax:2697049
225 441-445 Species denotes CoVs Tax:11118
226 457-465 Species denotes SARS-CoV Tax:694009
227 475-483 Species denotes MERS-CoV Tax:1335626
228 591-594 Species denotes CoV Tax:11118
229 677-680 Species denotes CoV Tax:11118
230 685-690 Species denotes human Tax:9606
231 691-701 Species denotes SARS-CoV-2 Tax:2697049
232 73-106 Disease denotes respiratory tract infection broke MESH:D012141
233 540-548 Disease denotes COVID-19 MESH:C000657245
252 1048-1053 Species denotes Human Tax:9606
253 1057-1062 Species denotes human Tax:9606
254 1079-1089 Species denotes SARS-CoV-2 Tax:2697049
255 1190-1198 Species denotes patients Tax:9606
256 1257-1265 Species denotes patients Tax:9606
257 1305-1313 Species denotes patients Tax:9606
258 1330-1336 Species denotes people Tax:9606
259 1358-1366 Species denotes patients Tax:9606
260 1463-1471 Species denotes patients Tax:9606
261 1577-1585 Species denotes SARS-CoV Tax:694009
262 1590-1598 Species denotes MERS-CoV Tax:1335626
263 1742-1750 Species denotes patients Tax:9606
264 1802-1810 Species denotes MERS-CoV Tax:1335626
265 1942-1952 Species denotes SARS-CoV-2 Tax:2697049
266 2021-2031 Species denotes SARS-CoV-2 Tax:2697049
267 1454-1462 Disease denotes COVID-19 MESH:C000657245
268 1660-1670 Disease denotes Infections MESH:D007239
269 1789-1798 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 73-90 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T23 517-523 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T24 577-583 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T25 627-633 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T26 812-819 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 73-90 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T50 73-100 Disease denotes respiratory tract infection http://purl.obolibrary.org/obo/MONDO_0024355
T51 91-100 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T52 265-273 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T53 341-349 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 457-465 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 540-548 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T56 691-699 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 1079-1087 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 1454-1462 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 1577-1585 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 1706-1710 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T61 1789-1798 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T62 1942-1950 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 2021-2029 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T50 178-179 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 227-230 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T52 389-393 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T53 423-424 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 489-496 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T55 498-500 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T56 511-516 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T57 673-676 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T58 685-690 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T59 742-746 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T60 1048-1053 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T61 1057-1062 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T62 1822-1824 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T63 1865-1872 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T64 1896-1903 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T17 812-819 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T18 1213-1221 Chemical denotes carriers http://purl.obolibrary.org/obo/CHEBI_78059

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T44 0-42 Sentence denotes Epidemiology − reservoirs and transmission
T45 43-195 Sentence denotes The epidemic of unknown acute respiratory tract infection broke out first in Wuhan, China, since 12 December 2019, possibly related to a seafood market.
T46 196-284 Sentence denotes Several studies suggested that bat may be the potential reservoir of SARS-CoV-2 [9, 10].
T47 285-380 Sentence denotes However, there is no evidence so far that the origin of SARS-CoV-2 was from the seafood market.
T48 381-505 Sentence denotes Rather, bats are the natural reservoir of a wide variety of CoVs, including SARS-CoV-like and MERS-CoV-like viruses [11–13].
T49 506-802 Sentence denotes Upon virus genome sequencing, the COVID-19 was analyzed throughout the genome to Bat CoV RaTG13 and showed 96.2% overall genome sequence identity [8], suggesting that bat CoV and human SARS-CoV-2 might share the same ancestor, although bats are not available for sale in this seafood market [14].
T50 803-1047 Sentence denotes Besides, protein sequences alignment and phylogenetic analysis [15] showed that similar residues of receptor were observed in many species, which provided more possibility of alternative intermediate hosts, such as turtles, pangolin and snacks.
T51 1048-1222 Sentence denotes Human-to-human transmission of SARS-CoV-2 occurs mainly between family members, including relatives and friends who intimately contacted with patients or incubation carriers.
T52 1223-1393 Sentence denotes It is reported [16] that 31.3% of patients recent travelled to Wuhan and 72.3% of patients contacting with people from Wuhan among the patients of non-residents of Wuhan.
T53 1394-1543 Sentence denotes Transmission between healthcare workers occurred in 3.8% of COVID-19 patients, issued by the National Health Commission of China on 14 February 2020.
T54 1544-1659 Sentence denotes By contrast, the transmission of SARS-CoV and MERS-CoV is reported to occur mainly through nosocomial transmission.
T55 1660-1826 Sentence denotes Infections of healthcare workers in 33–42% of SARS cases and transmission between patients (62–79%) was the most common route of infection in MERS-CoV cases [17, 18].
T56 1827-1966 Sentence denotes Direct contact with intermediate host animals or consumption of wild animals was suspected to be the main route of SARS-CoV-2 transmission.
T57 1967-2047 Sentence denotes However, the source(s) and transmission routine(s) of SARS-CoV-2 remain elusive.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T12 67-100 Phenotype denotes acute respiratory tract infection http://purl.obolibrary.org/obo/HP_0011948

2_test

Id Subject Object Predicate Lexical cue
32169119-32004758-70132191 280-282 32004758 denotes 10
32169119-16278351-70132192 498-500 16278351 denotes 11
32169119-30634396-70132192 498-500 30634396 denotes 11
32169119-16195424-70132192 498-500 16195424 denotes 11
32169119-32015507-70132193 653-654 32015507 denotes 8
32169119-32015508-70132194 798-800 32015508 denotes 14
32169119-26336062-70132195 1818-1820 26336062 denotes 17
32169119-28378546-70132196 1822-1824 28378546 denotes 18