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PMC:7068984 / 25270-27272 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
869 691-702 Gene denotes cathepsin B Gene:1508
870 965-978 Gene denotes Neuraminidase Gene:4758
871 1026-1039 Gene denotes neuraminidase Gene:4758
872 131-136 Species denotes HIV-1 Tax:11676
873 515-520 Species denotes Ebola Tax:1570291
874 746-751 Species denotes Ebola Tax:1570291
875 907-918 Species denotes DNA viruses Tax:2080735
876 1122-1139 Species denotes Influenza viruses Tax:11308
877 1366-1377 Species denotes Herpesvirus Tax:39059
878 1659-1664 Species denotes Ebola Tax:1570291
879 1678-1682 Species denotes H1N1 Tax:114727
880 1966-1971 Species denotes human Tax:9606
881 1979-1992 Species denotes coronaviruses Tax:11118
882 729-738 Species denotes Influenza Tax:11309
883 1666-1675 Species denotes influenza Tax:11309
884 222-225 Species denotes HIV Tax:12721
885 80-99 Chemical denotes Lopinavir/Ritonavir MESH:C558899
886 291-302 Chemical denotes Chloroquine MESH:D002738
887 304-318 Chemical denotes -aminoquinolin
888 432-442 Chemical denotes Remdesivir MESH:C000606551
889 613-619 Chemical denotes serine MESH:D012694
890 226-230 Disease denotes AIDS MESH:D000163
891 383-390 Disease denotes Malaria MESH:D008288
892 392-410 Disease denotes autoimmune disease MESH:D001327
893 1395-1453 Disease denotes cytomegalovirus AIDS-associated cytomegalovirus infections MESH:D003586

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T168 131-134 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T169 150-157 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T170 222-225 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T171 330-339 Body_part denotes endosomal http://purl.org/sig/ont/fma/fma67180
T172 453-463 Body_part denotes Nucleotide http://purl.org/sig/ont/fma/fma82740
T173 550-553 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T174 613-619 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T175 851-855 Body_part denotes mRNA http://purl.org/sig/ont/fma/fma67122
T176 899-902 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T177 907-910 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T178 1081-1085 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T179 1221-1228 Body_part denotes guanine http://purl.org/sig/ont/fma/fma82775
T180 1520-1523 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T181 1638-1641 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T182 1645-1648 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T179 185-195 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T180 226-230 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T181 232-236 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T182 383-390 Disease denotes Malaria http://purl.obolibrary.org/obo/MONDO_0005136
T183 392-410 Disease denotes autoimmune disease http://purl.obolibrary.org/obo/MONDO_0007179
T184 444-446 Disease denotes GS http://purl.obolibrary.org/obo/MONDO_0005773
T185 515-520 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T186 522-526 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T187 729-738 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T188 746-751 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T189 925-929 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T190 1122-1131 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T191 1411-1415 Disease denotes AIDS http://purl.obolibrary.org/obo/MONDO_0012268
T192 1427-1453 Disease denotes cytomegalovirus infections http://purl.obolibrary.org/obo/MONDO_0005132
T193 1659-1664 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T194 1666-1683 Disease denotes influenza A(H1N1) http://purl.obolibrary.org/obo/MONDO_0005460
T195 1666-1675 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T240 498-503 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T241 534-535 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T242 554-561 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T243 648-656 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T244 701-702 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T245 718-728 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T246 857-858 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T247 874-882 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T248 911-918 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T249 940-942 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T250 1004-1012 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T251 1081-1085 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T252 1132-1139 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T253 1140-1145 http://purl.obolibrary.org/obo/CLO_0001625 denotes A [95
T254 1201-1202 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T255 1676-1677 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T256 1820-1821 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T257 1914-1922 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T258 1924-1931 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T259 1932-1933 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T260 1948-1955 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T261 1966-1971 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T262 1972-1978 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T263 1994-1997 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T178 13-19 Chemical denotes Action http://purl.obolibrary.org/obo/CHEBI_5133
T179 80-89 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T180 109-119 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T181 150-157 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T182 291-302 Chemical denotes Chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T183 362-382 Chemical denotes autophagy inhibitors http://purl.obolibrary.org/obo/CHEBI_88230
T184 372-382 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T185 444-451 Chemical denotes GS-5734 http://purl.obolibrary.org/obo/CHEBI_145994
T186 444-446 Chemical denotes GS http://purl.obolibrary.org/obo/CHEBI_73516
T187 453-463 Chemical denotes Nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T188 473-480 Chemical denotes prodrug http://purl.obolibrary.org/obo/CHEBI_50266
T189 613-638 Chemical denotes serine protease inhibitor http://purl.obolibrary.org/obo/CHEBI_64926
T190 613-619 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T191 620-638 Chemical denotes protease inhibitor http://purl.obolibrary.org/obo/CHEBI_37670|http://purl.obolibrary.org/obo/CHEBI_60258
T193 629-638 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T194 704-717 Chemical denotes anticoagulant http://purl.obolibrary.org/obo/CHEBI_50249
T195 790-799 Chemical denotes guanosine http://purl.obolibrary.org/obo/CHEBI_16750
T196 800-810 Chemical denotes nucleoside http://purl.obolibrary.org/obo/CHEBI_33838
T197 907-910 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T198 953-964 Chemical denotes Oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T199 965-988 Chemical denotes Neuraminidase inhibitor http://purl.obolibrary.org/obo/CHEBI_52425
T200 979-988 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T201 1183-1193 Chemical denotes Nucleoside http://purl.obolibrary.org/obo/CHEBI_33838
T202 1221-1228 Chemical denotes guanine http://purl.obolibrary.org/obo/CHEBI_16235
T203 1312-1323 Chemical denotes Ganciclovir http://purl.obolibrary.org/obo/CHEBI_465284
T204 1324-1334 Chemical denotes Nucleoside http://purl.obolibrary.org/obo/CHEBI_33838
T205 1349-1358 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T206 1488-1493 Chemical denotes T-705 http://purl.obolibrary.org/obo/CHEBI_134722
T207 1495-1505 Chemical denotes Nucleoside http://purl.obolibrary.org/obo/CHEBI_33838
T208 1520-1544 Chemical denotes RNA polymerase inhibitor http://purl.obolibrary.org/obo/CHEBI_37416
T209 1535-1544 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T210 1645-1648 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T44 362-371 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T45 362-371 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T46 648-663 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T47 704-728 http://purl.obolibrary.org/obo/GO_0050819 denotes anticoagulant activities
T48 832-841 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T49 1059-1066 http://purl.obolibrary.org/obo/GO_0007114 denotes budding
T50 1087-1104 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T51 1087-1104 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T52 1592-1604 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T53 1645-1658 http://purl.obolibrary.org/obo/GO_0071897 denotes DNA synthesis
T54 1649-1658 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T55 1791-1797 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T167 0-70 Sentence denotes Status Drugs Action mode Anti-infective mechanism Target diseases Ref.
T168 71-250 Sentence denotes Approved Lopinavir/Ritonavir Protease inhibitors Inhibiting HIV-1 protease for protein cleavage, resulting in non-infectious, immature viral particles HIV/AIDS, SARS, MERS [83–85]
T169 251-418 Sentence denotes Approved, Investigational, Vet approved Chloroquine 9-aminoquinolin Increasing endosomal pH, immunomodulating, autophagy inhibitors Malaria, autoimmune disease [79–82]
T170 419-532 Sentence denotes Experimental Remdesivir (GS-5734) Nucleotide analogue prodrug Interfering with virus post-entry Ebola, SARS, MERS
T171 533-575 Sentence denotes (A wide array of RNA viruses) [76, 88, 89]
T172 576-760 Sentence denotes Investigational Nafamostat Synthetic serine protease inhibitor Prevents membrane fusion by reducing the release of cathepsin B; anticoagulant activities Influenza, MERS, Ebola [90, 91]
T173 761-943 Sentence denotes Approved Ribavirin Synthetic guanosine nucleoside Interfering with the synthesis of viral mRNA (a broad-spectrum activity against several RNA and DNA viruses) HCV, SARS, MERS [92–94]
T174 944-1150 Sentence denotes Approved Oseltamivir Neuraminidase inhibitor Inhibiting the activity of the viral neuraminidase enzyme, preventing budding from the host cell, viral replication, and infectivity Influenza viruses A [95, 96]
T175 1151-1285 Sentence denotes Approved Penciclovir/ Acyclovir Nucleoside analog A synthetic acyclic guanine derivative, resulting in chain termination HSV, VZV [97]
T176 1286-1458 Sentence denotes Approved, Investigational Ganciclovir Nucleoside analog Potent inhibitor of the Herpesvirus family including cytomegalovirus AIDS-associated cytomegalovirus infections [98]
T177 1459-1513 Sentence denotes Investigational Favipiravir (T-705) Nucleoside analog:
T178 1514-1692 Sentence denotes Viral RNA polymerase inhibitor Acting on viral genetic copying to prevent its reproduction, without affecting host cellular RNA or DNA synthesis Ebola, influenza A(H1N1) [99–101]
T179 1693-2002 Sentence denotes Approved, Investigational, Vet approved Nitazoxanide Antiprotozoal agent Modulating the survival, growth, and proliferation of a range of extracellular and intracellular protozoa, helminths, anaerobic and microaerophilic bacteria, viruses A wide range of viruses including human/animal coronaviruses [102–104]

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T51 392-410 Phenotype denotes autoimmune disease http://purl.obolibrary.org/obo/HP_0002960

2_test

Id Subject Object Predicate Lexical cue
32169119-12662125-70132253 244-246 12662125 denotes 83
32169119-31900204-70132253 244-246 31900204 denotes 83
32169119-14985565-70132253 244-246 14985565 denotes 83
32169119-14592603-70132254 412-414 14592603 denotes 79
32169119-16115318-70132254 412-414 16115318 denotes 79
32169119-25727221-70132254 412-414 25727221 denotes 79
32169119-32020029-70132254 412-414 32020029 denotes 79
32169119-29511076-70132255 564-566 29511076 denotes 76
32169119-30987343-70132256 568-570 30987343 denotes 88
32169119-31142680-70132257 572-574 31142680 denotes 89
32169119-18220789-70132258 753-755 18220789 denotes 90
32169119-26346967-70132259 757-759 26346967 denotes 91
32169119-30215672-70132260 937-939 30215672 denotes 92
32169119-15018130-70132260 937-939 15018130 denotes 92
32169119-24811411-70132261 1147-1149 24811411 denotes 96
32169119-29896665-70132262 1282-1284 29896665 denotes 97
32169119-29678260-70132263 1455-1457 29678260 denotes 98
32169119-24084488-70132264 1685-1687 24084488 denotes 99
32169119-25108173-70132265 1994-1997 25108173 denotes 102
32169119-25451075-70132265 1994-1997 25451075 denotes 102
32169119-27095301-70132265 1994-1997 27095301 denotes 102