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PMC:7068984 / 2212-3240 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
96 77-90 Species denotes β-coronavirus Tax:694002
97 123-134 Species denotes coronavirus Tax:11118
98 163-185 Species denotes 2019-novel coronavirus Tax:2697049
99 187-196 Species denotes 2019-nCoV Tax:2697049
100 329-340 Species denotes Coronavirus Tax:11118
101 411-426 Species denotes new coronavirus Tax:2697049
102 430-440 Species denotes SARS-CoV-2 Tax:2697049
103 517-527 Species denotes SARS-CoV-2 Tax:2697049
104 535-542 Species denotes patient Tax:9606
105 622-632 Species denotes SARS-CoV-2 Tax:2697049
106 815-825 Species denotes SARS-CoV-2 Tax:2697049
107 1000-1005 Species denotes human Tax:9606
108 1009-1014 Species denotes human Tax:9606
109 31-40 Disease denotes pneumonia MESH:D011014
110 289-313 Disease denotes coronavirus disease 2019 MESH:C000657245
111 315-323 Disease denotes COVID-19 MESH:C000657245
112 685-693 Disease denotes COVID-19 MESH:C000657245
113 747-753 Disease denotes deaths MESH:D003643
114 915-924 Disease denotes pneumonia MESH:D011014
115 971-979 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 597-603 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 31-40 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T22 289-313 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T23 315-323 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 430-438 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 517-525 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 622-630 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 685-693 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 815-823 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 915-924 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 971-979 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T13 18-19 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 58-59 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 233-245 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T16 457-459 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T17 515-516 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 533-534 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 550-551 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 658-659 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 997-1005 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes by human
T22 1009-1014 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 787-799 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-117 Sentence denotes In December 2019, a cluster of pneumonia cases, caused by a newly identified β-coronavirus, occurred in Wuhan, China.
T16 118-252 Sentence denotes This coronavirus, was initially named as the 2019-novel coronavirus (2019-nCoV) on 12 January 2020 by World Health Organization (WHO).
T17 253-474 Sentence denotes WHO officially named the disease as coronavirus disease 2019 (COVID-19) and Coronavirus Study Group (CSG) of the International Committee proposed to name the new coronavirus as SARS-CoV-2, both issued on 11 February 2020.
T18 475-637 Sentence denotes The Chinese scientists rapidly isolated a SARS-CoV-2 from a patient within a short time on 7 January 2020 and came out to genome sequencing of the SARS-CoV-2 [1].
T19 638-758 Sentence denotes As of 1 March 2020, a total of 79,968 cases of COVID-19 have been confirmed in mainland China including 2873 deaths [2].
T20 759-1028 Sentence denotes Studies estimated the basic reproduction number (R0) of SARS-CoV-2 to be around 2.2 [3], or even more (range from 1.4 to 6.5) [4], and familial clusters of pneumonia [5] outbreaks add to evidence of the epidemic COVID-19 steadily growing by human-to-human transmission.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T8 31-40 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T9 915-924 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32169119-32007145-70132186 634-635 32007145 denotes 1
32169119-31986261-70132187 926-927 31986261 denotes 5