PMC:7068164 / 9750-10255 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"136","span":{"begin":165,"end":169},"obj":"Gene"},{"id":"137","span":{"begin":194,"end":195},"obj":"Gene"}],"attributes":[{"id":"A136","pred":"tao:has_database_id","subj":"136","obj":"Gene:43740578"},{"id":"A137","pred":"tao:has_database_id","subj":"137","obj":"Gene:43740575"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"All cases were confirmed according to specific assays targeting at least two separate genes (envelope (E) gene as a screening test and RNA-dependent RNA polymerase (RdRp) gene or nucleoprotein (N) gene for confirmation) [8,17]. The specimen types tested were reported for 27 cases: 15 had positive nasopharyngeal swabs, nine had positive throat swabs, three cases had positive sputum, two had a positive nasal swab, one case had a positive nasopharyngeal aspirate and one a positive endotracheal aspirate."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T4","span":{"begin":106,"end":110},"obj":"Body_part"},{"id":"T5","span":{"begin":135,"end":138},"obj":"Body_part"},{"id":"T6","span":{"begin":149,"end":152},"obj":"Body_part"},{"id":"T7","span":{"begin":171,"end":175},"obj":"Body_part"},{"id":"T8","span":{"begin":197,"end":201},"obj":"Body_part"},{"id":"T9","span":{"begin":338,"end":344},"obj":"Body_part"},{"id":"T10","span":{"begin":377,"end":383},"obj":"Body_part"}],"attributes":[{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma312401"}],"text":"All cases were confirmed according to specific assays targeting at least two separate genes (envelope (E) gene as a screening test and RNA-dependent RNA polymerase (RdRp) gene or nucleoprotein (N) gene for confirmation) [8,17]. The specimen types tested were reported for 27 cases: 15 had positive nasopharyngeal swabs, nine had positive throat swabs, three cases had positive sputum, two had a positive nasal swab, one case had a positive nasopharyngeal aspirate and one a positive endotracheal aspirate."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T3","span":{"begin":338,"end":344},"obj":"Body_part"},{"id":"T4","span":{"begin":377,"end":383},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"}],"text":"All cases were confirmed according to specific assays targeting at least two separate genes (envelope (E) gene as a screening test and RNA-dependent RNA polymerase (RdRp) gene or nucleoprotein (N) gene for confirmation) [8,17]. The specimen types tested were reported for 27 cases: 15 had positive nasopharyngeal swabs, nine had positive throat swabs, three cases had positive sputum, two had a positive nasal swab, one case had a positive nasopharyngeal aspirate and one a positive endotracheal aspirate."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T73","span":{"begin":86,"end":91},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T74","span":{"begin":106,"end":110},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T75","span":{"begin":114,"end":115},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T76","span":{"begin":126,"end":130},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T77","span":{"begin":171,"end":175},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T78","span":{"begin":197,"end":201},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T79","span":{"begin":247,"end":253},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T80","span":{"begin":272,"end":274},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T81","span":{"begin":393,"end":394},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T82","span":{"begin":429,"end":430},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T83","span":{"begin":472,"end":473},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"All cases were confirmed according to specific assays targeting at least two separate genes (envelope (E) gene as a screening test and RNA-dependent RNA polymerase (RdRp) gene or nucleoprotein (N) gene for confirmation) [8,17]. The specimen types tested were reported for 27 cases: 15 had positive nasopharyngeal swabs, nine had positive throat swabs, three cases had positive sputum, two had a positive nasal swab, one case had a positive nasopharyngeal aspirate and one a positive endotracheal aspirate."}

{"project":"LitCovid-sentences","denotations":[{"id":"T105","span":{"begin":0,"end":227},"obj":"Sentence"},{"id":"T106","span":{"begin":228,"end":281},"obj":"Sentence"},{"id":"T107","span":{"begin":282,"end":505},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"All cases were confirmed according to specific assays targeting at least two separate genes (envelope (E) gene as a screening test and RNA-dependent RNA polymerase (RdRp) gene or nucleoprotein (N) gene for confirmation) [8,17]. The specimen types tested were reported for 27 cases: 15 had positive nasopharyngeal swabs, nine had positive throat swabs, three cases had positive sputum, two had a positive nasal swab, one case had a positive nasopharyngeal aspirate and one a positive endotracheal aspirate."}