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PMC:7068163 / 7694-8941 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
130 104-107 Gene denotes Rox Gene:4335
131 1053-1054 Gene denotes E Gene:43740570
132 770-771 Gene denotes E Gene:43740570
133 914-921 Species denotes patient Tax:9606
134 1030-1047 Species denotes Wuhan coronavirus Tax:2697049
135 1064-1072 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T29 293-296 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T30 772-776 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T31 841-845 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T32 1055-1059 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T33 1093-1096 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T33 1064-1072 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T77 97-102 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T78 208-209 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 241-247 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T80 297-302 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T81 365-366 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 398-404 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T83 772-776 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T84 777-784 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T85 824-831 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T86 841-845 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T87 907-913 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T88 1055-1059 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T15 655-660 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 485-502 http://purl.obolibrary.org/obo/GO_0003887 denotes TaqDNA Polymerase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T63 0-544 Sentence denotes Three additional one-step real-time PCR systems were compared with the initially used QuantiTect Virus +Rox Vial kit (QIAGEN) (Table): (i) OneStep RT-PCR kit (QIAGEN; data not shown in the Table because only a limited number of samples were tested in only one run), (ii) LightCycler Multiplex RNA Virus Master (Roche, Mannheim, Germany; data not shown because only a limited number of samples were tested in only one run) and (iii) SuperScript III One-Step RT-PCR system with Platinum TaqDNA Polymerase (Invitrogen, Darmstadt, Germany) (Table).
T64 545-707 Sentence denotes Each assay protocol and thermoprofile was adjusted to the recommendations of the manufacturer, but primer and probe concentrations were the same as published [5].
T65 708-785 Sentence denotes They all showed comparable results in reduction of unspecific E gene signals.
T66 786-1147 Sentence denotes Using SuperScript III, the unspecific signals in the E gene screening assay were significantly reduced to 5% (13/257) in tested patient samples and negative extraction and non-template controls (Table), whereas Ct values for positive controls (Wuhan coronavirus 2019 E gene and SARS-CoV Frankfurt 1 genomic RNA [3]) were in the same range in QuantiTect (median:
T67 1148-1160 Sentence denotes 29.1; range:
T68 1161-1207 Sentence denotes 26.8–32.4; n = 85) and Superscript (median Ct:
T69 1208-1220 Sentence denotes 28.1; range:
T70 1221-1247 Sentence denotes 26.4–31.0; n = 30) setups.

2_test

Id Subject Object Predicate Lexical cue
32156330-31992387-29325822 704-705 31992387 denotes 5

MyTest

Id Subject Object Predicate Lexical cue
32156330-31992387-29325822 704-705 31992387 denotes 5