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PMC:7068163 / 5546-6961 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
87 418-421 Gene denotes Rox Gene:4335
88 476-483 Species denotes patient Tax:9606
89 629-636 Species denotes patient Tax:9606
90 666-676 Species denotes SARS-CoV-2 Tax:2697049
91 740-748 Species denotes patients Tax:9606
93 74-84 Species denotes SARS-CoV-2 Tax:2697049
96 920-928 Species denotes SARS-CoV Tax:694009
97 982-989 Species denotes patient Tax:9606
100 1200-1201 Gene denotes E Gene:43740570
101 1120-1128 Species denotes SARS-CoV Tax:694009
106 1249-1250 Gene denotes E Gene:43740570
107 1320-1321 Gene denotes E Gene:43740570
108 1297-1314 Species denotes Wuhan coronavirus Tax:2697049
109 1339-1347 Species denotes SARS-CoV Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 320-324 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T17 366-370 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T18 931-935 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T19 1076-1080 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T20 1141-1144 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T21 1202-1206 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T22 1251-1255 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T23 1322-1326 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T24 1360-1363 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 74-82 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 247-249 Disease denotes R2 http://purl.obolibrary.org/obo/MONDO_0019903
T28 666-674 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 920-928 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 1120-1128 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 1339-1347 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T46 119-120 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 132-136 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T48 233-234 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 301-308 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T50 320-324 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T51 353-360 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T52 366-370 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T53 380-381 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T54 411-416 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T55 472-475 http://purl.obolibrary.org/obo/CLO_0001445 denotes 617
T56 622-624 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T57 625-628 http://purl.obolibrary.org/obo/CLO_0001195 denotes 219
T58 817-820 http://purl.obolibrary.org/obo/CLO_0051456 denotes a E
T59 839-840 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T60 905-912 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T61 931-935 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T62 975-981 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T63 1076-1080 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T64 1089-1095 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T65 1202-1206 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T66 1251-1255 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T67 1257-1263 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T68 1322-1326 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T11 441-443 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T12 445-447 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T13 797-799 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 558-575 http://purl.obolibrary.org/obo/GO_0003887 denotes TaqDNA Polymerase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T42 0-189 Sentence denotes Table Comparison of two different one-step real-time RT-PCR systems with SARS-CoV-2 assays from Corman et al. [5] and a commercial test kit with kit-specific assays, Bavaria, February 2020
T43 190-399 Sentence denotes Real-time RT-PCR system PCR efficiency (%)a, linearity (R2) Limit of detection (copies/reaction) Unspecific signals count in E gene assay in totalb Unspecific signals in E gene assay (%)b Run time (hours)
T44 400-504 Sentence denotes QuantiTect Virus +Rox Vial kit (QIAGEN) ND ND 451/743(75/126 NC, 376/617 patient samples) 60.7 1:50
T45 505-656 Sentence denotes SuperScript III One-step RT-PCR System with Platinum TaqDNA Polymerase (Invitrogen) 95 / 0,99c 50c 13/257(2/38 NC,11/219 patient samples) 5.1 1:28
T46 657-766 Sentence denotes RealStar SARS-CoV-2 RT-PCR kit 1.0 (Altona) 125 / 0,97d 10d 0/111(0/38 NC, 0/73 patients samples) 0 2:15
T47 767-816 Sentence denotes NC: negative control samples; ND: not determined.
T48 817-838 Sentence denotes a E = 10−1/slope − 1.
T49 839-1059 Sentence denotes b Indicated counts and percentage values of unspecific background signals in the SARS-CoV E gene assay are based on the total number of tested patient samples as well as the negative extraction and non-template controls.
T50 1060-1191 Sentence denotes c Only for RdRp gene assays, tested with four replicates of SARS-CoV Frankfurt 1 RNA [6]; 10-fold serial dilutions were determined.
T51 1192-1233 Sentence denotes For the E gene, the assay was not linear.
T52 1234-1415 Sentence denotes d Only for the E gene, tested with two replicates of synthetic Wuhan coronavirus 2019 E gene control and SARS-CoV Frankfurt 1 RNA each [6]; 10-fold serial dilutions were determined.

2_test

Id Subject Object Predicate Lexical cue
32156330-31992387-29325818 112-113 31992387 denotes 5
32156330-30059721-29325819 1146-1147 30059721 denotes 6
32156330-30059721-29325820 1370-1371 30059721 denotes 6

MyTest

Id Subject Object Predicate Lexical cue
32156330-31992387-29325818 112-113 31992387 denotes 5
32156330-30059721-29325819 1146-1147 30059721 denotes 6
32156330-30059721-29325820 1370-1371 30059721 denotes 6