PMC:7068163 / 5546-6961
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
87 | 418-421 | Gene | denotes | Rox | Gene:4335 |
88 | 476-483 | Species | denotes | patient | Tax:9606 |
89 | 629-636 | Species | denotes | patient | Tax:9606 |
90 | 666-676 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
91 | 740-748 | Species | denotes | patients | Tax:9606 |
93 | 74-84 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
96 | 920-928 | Species | denotes | SARS-CoV | Tax:694009 |
97 | 982-989 | Species | denotes | patient | Tax:9606 |
100 | 1200-1201 | Gene | denotes | E | Gene:43740570 |
101 | 1120-1128 | Species | denotes | SARS-CoV | Tax:694009 |
106 | 1249-1250 | Gene | denotes | E | Gene:43740570 |
107 | 1320-1321 | Gene | denotes | E | Gene:43740570 |
108 | 1297-1314 | Species | denotes | Wuhan coronavirus | Tax:2697049 |
109 | 1339-1347 | Species | denotes | SARS-CoV | Tax:694009 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T16 | 320-324 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T17 | 366-370 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T18 | 931-935 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T19 | 1076-1080 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T20 | 1141-1144 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T21 | 1202-1206 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T22 | 1251-1255 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T23 | 1322-1326 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T24 | 1360-1363 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T26 | 74-82 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T27 | 247-249 | Disease | denotes | R2 | http://purl.obolibrary.org/obo/MONDO_0019903 |
T28 | 666-674 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T29 | 920-928 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T30 | 1120-1128 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T31 | 1339-1347 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T46 | 119-120 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T47 | 132-136 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T48 | 233-234 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T49 | 301-308 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signals |
T50 | 320-324 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T51 | 353-360 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signals |
T52 | 366-370 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T53 | 380-381 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
T54 | 411-416 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
T55 | 472-475 | http://purl.obolibrary.org/obo/CLO_0001445 | denotes | 617 |
T56 | 622-624 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T57 | 625-628 | http://purl.obolibrary.org/obo/CLO_0001195 | denotes | 219 |
T58 | 817-820 | http://purl.obolibrary.org/obo/CLO_0051456 | denotes | a E |
T59 | 839-840 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
T60 | 905-912 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signals |
T61 | 931-935 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T62 | 975-981 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T63 | 1076-1080 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T64 | 1089-1095 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T65 | 1202-1206 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T66 | 1251-1255 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T67 | 1257-1263 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T68 | 1322-1326 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T11 | 441-443 | Chemical | denotes | ND | http://purl.obolibrary.org/obo/CHEBI_73419 |
T12 | 445-447 | Chemical | denotes | ND | http://purl.obolibrary.org/obo/CHEBI_73419 |
T13 | 797-799 | Chemical | denotes | ND | http://purl.obolibrary.org/obo/CHEBI_73419 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3 | 558-575 | http://purl.obolibrary.org/obo/GO_0003887 | denotes | TaqDNA Polymerase |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T42 | 0-189 | Sentence | denotes | Table Comparison of two different one-step real-time RT-PCR systems with SARS-CoV-2 assays from Corman et al. [5] and a commercial test kit with kit-specific assays, Bavaria, February 2020 |
T43 | 190-399 | Sentence | denotes | Real-time RT-PCR system PCR efficiency (%)a, linearity (R2) Limit of detection (copies/reaction) Unspecific signals count in E gene assay in totalb Unspecific signals in E gene assay (%)b Run time (hours) |
T44 | 400-504 | Sentence | denotes | QuantiTect Virus +Rox Vial kit (QIAGEN) ND ND 451/743(75/126 NC, 376/617 patient samples) 60.7 1:50 |
T45 | 505-656 | Sentence | denotes | SuperScript III One-step RT-PCR System with Platinum TaqDNA Polymerase (Invitrogen) 95 / 0,99c 50c 13/257(2/38 NC,11/219 patient samples) 5.1 1:28 |
T46 | 657-766 | Sentence | denotes | RealStar SARS-CoV-2 RT-PCR kit 1.0 (Altona) 125 / 0,97d 10d 0/111(0/38 NC, 0/73 patients samples) 0 2:15 |
T47 | 767-816 | Sentence | denotes | NC: negative control samples; ND: not determined. |
T48 | 817-838 | Sentence | denotes | a E = 10−1/slope − 1. |
T49 | 839-1059 | Sentence | denotes | b Indicated counts and percentage values of unspecific background signals in the SARS-CoV E gene assay are based on the total number of tested patient samples as well as the negative extraction and non-template controls. |
T50 | 1060-1191 | Sentence | denotes | c Only for RdRp gene assays, tested with four replicates of SARS-CoV Frankfurt 1 RNA [6]; 10-fold serial dilutions were determined. |
T51 | 1192-1233 | Sentence | denotes | For the E gene, the assay was not linear. |
T52 | 1234-1415 | Sentence | denotes | d Only for the E gene, tested with two replicates of synthetic Wuhan coronavirus 2019 E gene control and SARS-CoV Frankfurt 1 RNA each [6]; 10-fold serial dilutions were determined. |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32156330-31992387-29325818 | 112-113 | 31992387 | denotes | 5 |
32156330-30059721-29325819 | 1146-1147 | 30059721 | denotes | 6 |
32156330-30059721-29325820 | 1370-1371 | 30059721 | denotes | 6 |
MyTest
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32156330-31992387-29325818 | 112-113 | 31992387 | denotes | 5 |
32156330-30059721-29325819 | 1146-1147 | 30059721 | denotes | 6 |
32156330-30059721-29325820 | 1370-1371 | 30059721 | denotes | 6 |