PMC:7068163 / 4817-5545
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 78 | 250-253 | Gene | denotes | Rox | Gene:4335 |
| 79 | 191-199 | Species | denotes | SARS-CoV | Tax:694009 |
| 80 | 363-370 | Species | denotes | patient | Tax:9606 |
| 81 | 633-641 | Species | denotes | SARS-CoV | Tax:694009 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T13 | 202-206 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T14 | 654-657 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T15 | 697-701 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T24 | 191-199 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T25 | 633-641 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T36 | 39-43 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T37 | 47-49 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T38 | 59-60 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T39 | 165-171 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T40 | 202-206 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T41 | 243-248 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T42 | 309-316 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signals |
| T43 | 356-362 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T44 | 566-573 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signals |
| T45 | 697-701 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T38 | 0-172 | Sentence | denotes | During the 2 weeks after the first PCR test on 27 January, a rapidly increasing number of case contacts in Bavaria was identified and their respiratory samples were tested. |
| T39 | 173-508 | Sentence | denotes | We found that the SARS-CoV E gene screening assay with the QuantiTect Virus +Rox Vial kit showed moderate to high amounts of unspecific signals in late cycles in 61% (451/743) of the tested patient samples and also of negative extraction and non-template controls (Table, Figure 2), which complicated the evaluation of the qPCR result. |
| T40 | 509-589 | Sentence | denotes | The RdRp assays were basically free from such unspecific signals in late cycles. |
| T41 | 590-728 | Sentence | denotes | Cycle threshold (Ct) values of the control SARS-CoV Frankfurt 1 RNA were reached three cycles earlier in E gene assay than in RdRp assays. |