PMC:7068163 / 2338-3574
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 45 | 234-237 | Gene | denotes | Rox | Gene:4335 |
| 46 | 698-699 | Gene | denotes | E | Gene:43740570 |
| 47 | 115-128 | Species | denotes | Coronaviruses | Tax:11118 |
| 48 | 675-692 | Species | denotes | Wuhan coronavirus | Tax:2697049 |
| 49 | 747-755 | Species | denotes | SARS-CoV | Tax:694009 |
| 50 | 858-861 | Species | denotes | CoV | Tax:11118 |
| 51 | 919-929 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 52 | 1018-1026 | Species | denotes | patients | Tax:9606 |
| 53 | 1039-1046 | Species | denotes | persons | Tax:9606 |
| 54 | 1084-1109 | Chemical | denotes | phosphate buffered saline | |
| 55 | 1111-1114 | Chemical | denotes | PBS |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 46-50 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T2 | 60-64 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T3 | 700-704 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T4 | 768-771 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T5 | 867-871 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T6 | 991-997 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T7 | 1048-1054 | Body_part | denotes | Sputum | http://purl.org/sig/ont/fma/fma312401 |
| T8 | 1117-1120 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 991-997 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T2 | 1048-1054 | Body_part | denotes | Sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T15 | 747-755 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T16 | 919-927 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11 | 46-50 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T12 | 60-64 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T13 | 154-160 | http://purl.obolibrary.org/obo/CLO_0001929 | denotes | Berlin |
| T14 | 227-232 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T15 | 562-568 | http://purl.obolibrary.org/obo/CLO_0001929 | denotes | Berlin |
| T16 | 627-632 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T17 | 700-704 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T18 | 867-871 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T19 | 885-891 | http://purl.obolibrary.org/obo/CLO_0001929 | denotes | Berlin |
| T20 | 1178-1179 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T3 | 1084-1093 | Chemical | denotes | phosphate | http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 862-866 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | RdRP |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 0-165 | Sentence | denotes | We initially used the protocol based on the E gene and RdRp gene developed by the German Consiliary Laboratory for Coronaviruses hosted at the Charité in Berlin [5]. |
| T17 | 166-363 | Sentence | denotes | Real-time RT-PCR was initially performed with the QuantiTect Virus +Rox Vial kit (QIAGEN, Hilden, Germany) on the Bio-Rad CFX96 Touch Real-Time PCR Detection System (Bio-Rad, Feldkirchen, Germany). |
| T18 | 364-486 | Sentence | denotes | The kit was chosen for its frequent and successful use in our laboratory with other assays and its immediate availability. |
| T19 | 487-579 | Sentence | denotes | Primers and probes were used as described [5] and provided by TIB Molbiol (Berlin, Germany). |
| T20 | 580-806 | Sentence | denotes | Control material was ordered from the European Virus Archive (EVAg) and consisted of synthetic Wuhan coronavirus 2019 E gene control (reference number 026N-03866) and SARS-CoV Frankfurt 1 RNA (reference number 004N-02005) [6]. |
| T21 | 807-945 | Sentence | denotes | In addition, the control of LightMix Modular Wuhan CoV RdRP-gene (TibMolbiol, Berlin, Germany) was used for the SARS-CoV-2 specific assay. |
| T22 | 946-1047 | Sentence | denotes | Respiratory samples (nasopharyngeal swabs or sputum) were obtained from patients and contact persons. |
| T23 | 1048-1116 | Sentence | denotes | Sputum samples were diluted in 2 mL phosphate buffered saline (PBS). |
| T24 | 1117-1236 | Sentence | denotes | RNA was extracted using the QIAamp Bio Robot kit (QIAGEN) on a Hamilton Microlab Star (Hamilton, Bonaduz, Switzerland). |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32156330-31992387-29325812 | 162-163 | 31992387 | denotes | 5 |
| 32156330-31992387-29325813 | 530-531 | 31992387 | denotes | 5 |
| 32156330-30059721-29325814 | 803-804 | 30059721 | denotes | 6 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32156330-31992387-29325812 | 162-163 | 31992387 | denotes | 5 |
| 32156330-31992387-29325813 | 530-531 | 31992387 | denotes | 5 |
| 32156330-30059721-29325814 | 803-804 | 30059721 | denotes | 6 |