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PMC:7068163 / 10038-10997 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
151 846-856 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T36 199-202 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T39 657-666 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T40 846-854 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T102 68-69 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 148-155 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T104 251-252 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 509-513 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T79 0-8 Sentence denotes Workflow
T80 9-175 Sentence denotes With increasing sample numbers, it is crucial to implement a new assay into routine laboratory workflows that already exist for diagnostic testing of other pathogens.
T81 176-340 Sentence denotes Sample preparation and RNA extraction were carried out at BSL2 level under a safety class 2 cabinet wearing FFP3 filter masks following the WHO recommendations [8].
T82 341-498 Sentence denotes Samples arriving at our laboratory before 10:00 h were analysed on the same day and results were reported 6–7 h later to local health authorities (Figure 3).
T83 499-541 Sentence denotes Our daily test capacity was ca 80 samples.
T84 542-715 Sentence denotes It should be taken into account that well trained and experienced personnel is needed and seasonal pathogens, e.g. influenza and noroviruses, had to be analysed in parallel.
T85 716-797 Sentence denotes Overall, we managed to report the results for 97% of samples within the same day.
T86 798-911 Sentence denotes Figure 3 Flowchart and routine timeline of the SARS-CoV-2 diagnostic workflow at the LGL, Bavaria, February 2020
T87 912-916 Sentence denotes LGL:
T88 917-959 Sentence denotes Bavarian Health and Food Safety Authority.