> top > docs > PMC:7068161 > spans > 6684-14741 > annotations

PMC:7068161 / 6684-14741 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T33 47-55 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 161-169 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 922-930 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 1012-1020 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 1022-1046 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T38 1095-1103 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 1105-1138 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T40 1390-1398 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 1810-1819 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T42 3090-3099 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T43 3797-3805 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 5309-5317 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 5872-5881 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 6314-6322 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T47 6391-6400 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T48 6437-6445 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 6452-6461 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T50 6880-6888 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 7008-7017 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T52 7023-7031 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T53 7321-7330 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T54 7425-7434 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T28 1401-1404 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T29 1419-1424 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 1629-1634 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T31 1703-1704 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 1840-1842 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T33 2196-2199 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T34 2741-2746 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 2802-2808 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T36 3546-3547 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 3831-3836 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T38 3955-3965 http://purl.obolibrary.org/obo/CLO_0001658 denotes activating
T39 4005-4006 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 4136-4143 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T41 4253-4258 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T42 4692-4697 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T43 4784-4785 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 5455-5461 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T45 5695-5704 http://purl.obolibrary.org/obo/BFO_0000030 denotes objective
T46 5860-5861 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 6110-6115 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T48 6305-6309 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T49 6608-6613 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T50 7059-7060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 7287-7292 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T52 7435-7443 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 6497-6506 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2702-2710 http://purl.obolibrary.org/obo/GO_0007612 denotes learning

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T53 0-64 Sentence denotes Potential scenarios for the progression of the COVID-19 epidemic
T54 65-195 Sentence denotes Based on epidemiological factors, we characterised three sequential scenarios for the spread of SARS-CoV-2 in the EU/EEA (Figure).
T55 196-292 Sentence denotes The third scenario is divided in two sub-scenarios based on the impact on the healthcare system.
T56 293-562 Sentence denotes The scenarios are: (1) short, sporadic chains of transmission, (2) localised sustained transmission, (3a) widespread sustained transmission with increasing pressure on the healthcare system and (3b) widespread sustained transmission with overburdened healthcare system.
T57 563-670 Sentence denotes These scenarios are presented together with suggested control measures to limit the impact of the epidemic.
T58 671-787 Sentence denotes It should be noted that at different points in time, different countries may find themselves in different scenarios.
T59 788-864 Sentence denotes Some countries may skip one scenario to progress directly the following one.
T60 865-1011 Sentence denotes Figure Scenarios for the potential spread and impact of COVID-19 in the EU/EEA, with suggested actions for containment and mitigation, March 2020
T61 1012-1055 Sentence denotes COVID-19: coronavirus disease 2019; EU/EEA:
T62 1056-1151 Sentence denotes European Union/European Economic Area; SARS-CoV: severe acute respiratory syndrome coronavirus.
T63 1152-1323 Sentence denotes Up until 23 February, the number of cases in the EU/EEA was low and cases in Europe were either imported or part of well-defined transmission chains in Germany and France.
T64 1324-1493 Sentence denotes Since the beginning of the outbreak, the response of countries to SARS-CoV-2 has been to limit virus importation and to contain clusters of cases as swiftly as possible.
T65 1494-1649 Sentence denotes Those response measures, with the support of the measures taken in China, were initially effective in limiting the introduction of the virus to the EU/EEA.
T66 1650-1827 Sentence denotes Besides preventing incident cases, they have delayed a larger outbreak, allowing time to review and implement preparedness measures, and also avoiding the peak influenza season.
T67 1828-1925 Sentence denotes However, by 27 February, 92% (424/463) of cases reported in the EU/EEA had been locally acquired.
T68 1926-2068 Sentence denotes The majority of those locally acquired cases (93%) have been found in Italy and from there, seeding events occurred in other EU/EEA countries.
T69 2069-2278 Sentence denotes Considering the high number of cases reported within the EU/EEA, the European Centre for Disease Prevention and Control (ECDC) has since 28 February stopped distinguishing imported from locally acquired cases.
T70 2279-2525 Sentence denotes While some EU/EEA countries are under the first scenario ‘short, sporadic chains of transmission’, others have reached or are about to reach the third scenario ‘Widespread sustained transmission with increasing pressure on the healthcare system’.
T71 2526-2646 Sentence denotes The situation in the EU/EEA may change rapidly and countries may rapidly move from one scenario to the next at any time.
T72 2647-2661 Sentence denotes In Scenario 1:
T73 2662-2760 Sentence denotes Short, sporadic chains of transmission, learning about the epidemiology of the virus is paramount.
T74 2761-2870 Sentence denotes While the number of cases remains small, active case finding, including contact tracing, should be conducted.
T75 2871-2926 Sentence denotes Swabbing of asymptomatic individuals may be considered.
T76 2927-3005 Sentence denotes It is of paramount importance that contacts of cases are properly managed [3].
T77 3006-3061 Sentence denotes Cases should be isolated to avoid further transmission.
T78 3062-3141 Sentence denotes The potential adaptation of influenza surveillance systems should be evaluated.
T79 3142-3324 Sentence denotes It is now also advisable for countries to review their pandemic preparedness plan, including healthcare system surge capacity and plans for business and essential service continuity.
T80 3325-3513 Sentence denotes Alternative supply chains should be identified for personal protective equipment and other healthcare consumables; stockpiling should be considered as supply chains may later be disrupted.
T81 3514-3675 Sentence denotes Risks should be communicated in a transparent and consistent way to stakeholders and to the general public, according to the unfolding epidemiological situation.
T82 3676-3760 Sentence denotes Messages should include the actions being taken with acknowledgement of uncertainty.
T83 3761-3896 Sentence denotes With the continuous introduction of SARS-CoV-2 and the ability of the virus to rapidly spread, the EU/EEA is about to enter Scenario 2:
T84 3897-3928 Sentence denotes Limited sustained transmission.
T85 3929-3999 Sentence denotes Countries should consider activating their pandemic preparedness plan.
T86 4000-4185 Sentence denotes With a rising number of cases, resources may become stretched but detailed case histories, lists of contacts and samples for diagnostic testing should still be obtained, where possible.
T87 4186-4333 Sentence denotes These data will give valuable insight into the epidemiology of the virus and will be essential in planning for further progression of the outbreak.
T88 4334-4486 Sentence denotes While cases are concentrated in clusters, measures could be taken to boost capacity by transferring healthcare resources and staff from other locations.
T89 4487-4580 Sentence denotes In preparation for the following scenarios, contingency plans should be reviewed and updated.
T90 4581-4698 Sentence denotes Risk assessments before mass gatherings should consider their potential role in amplifying transmission of the virus.
T91 4699-4848 Sentence denotes In this phase, there may be increasing concern among the population, particularly if a high level of uncertainty persists regarding disease severity.
T92 4849-5120 Sentence denotes Risk communication messages should include clear justifications for any changes to the public health measures being implemented, as well as the critical importance of adherence to any such measures that may restrict personal freedom, such as quarantine or self-isolation.
T93 5121-5288 Sentence denotes In addition, public perception should be monitored, regarding the outbreak itself but also the response, so that concerns, misinformation and rumours can be addressed.
T94 5289-5475 Sentence denotes As the incidence of COVID-19 cases increases, it will at some point no longer be feasible, or efficient, to trace all contacts of confirmed cases, thus discontinuing active case finding.
T95 5476-5553 Sentence denotes This will probably happen at different points in time in different countries.
T96 5554-5605 Sentence denotes We characterise this as progression to Scenario 3a:
T97 5606-5690 Sentence denotes Widespread sustained transmission with increasing pressure on the healthcare system.
T98 5691-5882 Sentence denotes The objective would then shift from containment to mitigation, requiring substantial risk communication effort to ensure that the public knows how to respond in case of a suspected infection.
T99 5883-6116 Sentence denotes Countries may consider the implementation of social distancing measures such as cancellation of conferences, cultural or sport events or the recommendation of teleworking or school closures in order to slow transmission of the virus.
T100 6117-6238 Sentence denotes Such measures may reduce the acute burden on healthcare systems and possibly delay and/or reduce the peak of an outbreak.
T101 6239-6422 Sentence denotes In this phase, it may be essential to simplify case reporting and test for SARS-CoV-2 in specimens from syndromic primary healthcare and hospital-based influenza surveillance systems.
T102 6423-6630 Sentence denotes Detections of SARS-CoV-2 via influenza surveillance would initially be an indicator of transmission in the community and over time would allow the spread, intensity and severity of the virus to be described.
T103 6631-6771 Sentence denotes Preparations should be made for efficient triage of cases requiring medical attention and for cohort isolation of cases requiring treatment.
T104 6772-6863 Sentence denotes Citizens should be advised on what they can do to reduce pressure on the healthcare system.
T105 6864-7004 Sentence denotes The severity of COVID-19 remains unclear, but initial indications are that older adults and those with comorbidities are at higher risk [2].
T106 7005-7172 Sentence denotes If infection with SARS-CoV-2 becomes widespread, even a small proportion of severe cases could place healthcare systems under heavy pressure, resulting in Scenario 3b:
T107 7173-7243 Sentence denotes Widespread sustained transmission with overburdened healthcare system.
T108 7244-7396 Sentence denotes The burden will be compounded if the novel virus co-circulates with seasonal influenza, which stretches hospital capacity in many countries each winter.
T109 7397-7566 Sentence denotes As at 28 February, seasonal influenza activity remains high in the majority of European countries but the peak of transmission seems to be past in several countries [4].
T110 7567-7844 Sentence denotes In the event that hospitals, emergency rooms, and intensive care units are unable to admit patients because of insufficient numbers of beds or staff, countries should be ready to implement contingency plans (e.g. adapt standard hospital beds for the treatment of severe cases).
T111 7845-7986 Sentence denotes It may be necessary to reschedule non-essential operations and to evaluate whether alternative locations could be used to provide healthcare.
T112 7987-8057 Sentence denotes Redistribution of resources throughout the EU/EEA could be considered.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
71 47-55 Disease denotes COVID-19 MESH:C000657245
73 161-171 Species denotes SARS-CoV-2 Tax:2697049
75 922-930 Disease denotes COVID-19 MESH:C000657245
79 1095-1103 Species denotes SARS-CoV Tax:694009
80 1105-1150 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
81 1022-1046 Disease denotes coronavirus disease 2019 MESH:C000657245
85 1390-1400 Species denotes SARS-CoV-2 Tax:2697049
86 1895-1898 Chemical denotes EEA
87 2550-2553 Chemical denotes EEA
89 3797-3807 Species denotes SARS-CoV-2 Tax:2697049
95 6314-6324 Species denotes SARS-CoV-2 Tax:2697049
96 6437-6447 Species denotes SARS-CoV-2 Tax:2697049
97 5309-5317 Disease denotes COVID-19 MESH:C000657245
98 5872-5881 Disease denotes infection MESH:D007239
99 6343-6352 Disease denotes syndromic MESH:D061325
105 7023-7033 Species denotes SARS-CoV-2 Tax:2697049
106 7658-7666 Species denotes patients Tax:9606
107 8033-8036 Chemical denotes EEA
108 6880-6888 Disease denotes COVID-19 MESH:C000657245
109 7008-7017 Disease denotes infection MESH:D007239